Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 0.0e+00 1175.2 614 100.0
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 0.0e+00 1140.6 614 97.7
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 6.3e-234 814.3 651 71.1
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.1e-233 812.0 640 71.9
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 5.2e-196 688.3 648 63.9
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 7.2e-121 438.7 656 45.1
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 8.6e-114 415.2 693 44.0
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 8.9e-111 405.2 672 42.9
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 1.5e-110 404.4 647 43.7
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.5e-110 404.4 623 43.0
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.7e-107 393.7 649 41.6
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.5e-107 392.9 640 43.9
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.1e-105 388.3 635 43.5
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 2.8e-104 383.6 634 44.2
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 3.6e-104 383.3 355 62.5
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 8.0e-104 382.1 659 41.6
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.1e-103 380.2 657 41.7
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 8.9e-103 378.6 654 42.5
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 9.8e-102 375.2 640 43.0
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.9e-101 373.6 642 41.9
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.1e-100 371.7 647 41.0
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 5.4e-100 369.4 578 43.1
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 7.8e-99 365.5 625 41.6
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.3e-98 364.8 643 41.7
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.9e-98 363.2 609 43.2
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 8.6e-98 362.1 666 40.8
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 1.5e-97 361.3 696 39.2
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.6e-97 359.4 624 40.7
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.6e-97 359.4 630 41.9
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 7.3e-97 359.0 277 71.1
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.3e-97 359.0 628 42.4
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.8e-96 357.1 641 41.0
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 2.8e-96 357.1 625 41.4
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.4e-95 354.8 650 41.4
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.1e-95 353.6 627 41.3
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 4.0e-95 353.2 687 39.2
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 4.0e-95 353.2 682 40.6
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 1.2e-94 351.7 629 41.3
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.7e-93 346.7 624 40.4
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 3.7e-93 346.7 688 38.1
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 6.4e-93 345.9 699 38.2
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.1e-92 345.1 684 39.3
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 1.4e-92 344.7 614 39.9
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.2e-92 343.6 662 39.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.2e-91 341.7 639 40.2
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.6e-91 341.3 676 38.8
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.6e-91 341.3 636 38.7
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 4.6e-91 339.7 618 42.1
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.8e-91 339.0 613 41.1
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.7e-90 337.8 626 40.1
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 3.9e-90 336.7 633 39.3
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 8.6e-90 335.5 645 38.0
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.5e-89 334.7 632 39.1
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.5e-89 334.7 627 38.9
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 3.3e-89 333.6 618 39.8
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 5.6e-89 332.8 624 39.3
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 9.5e-89 332.0 704 38.8
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.2e-88 331.6 619 40.9
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.1e-88 330.9 616 40.3
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.1e-88 330.9 613 38.8
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 2.1e-88 330.9 677 36.6
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 6.2e-88 329.3 310 59.4
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 6.2e-88 329.3 615 41.0
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.1e-87 328.6 628 38.2
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.3e-87 327.4 613 39.5
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 4.0e-87 326.6 635 38.7
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.2e-87 326.2 628 37.7
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 6.8e-87 325.9 609 40.9
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 8.9e-87 325.5 614 39.1
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 2.6e-86 323.9 362 51.7
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 5.8e-86 322.8 609 39.1
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 2.9e-85 320.5 656 39.0
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 4.9e-85 319.7 607 38.4
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 4.9e-85 319.7 696 37.1
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 6.4e-85 319.3 339 54.0
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.4e-84 317.4 614 38.4
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 2.4e-84 317.4 555 40.2
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 9.2e-84 315.5 607 37.4
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 2.1e-83 314.3 612 37.4
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 2.7e-83 313.9 627 38.4
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 3.5e-83 313.5 603 41.0
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 7.8e-83 312.4 632 36.4
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.7e-82 311.2 641 37.6
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.0e-82 310.5 625 37.3
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 3.9e-82 310.1 633 37.1
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.6e-82 309.3 616 38.6
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.6e-82 308.9 640 38.1
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 1.5e-81 308.1 635 38.9
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 9.6e-81 305.4 658 34.7
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.2e-80 305.1 645 37.2
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 6.2e-80 302.8 661 36.5
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.8e-79 301.2 402 47.5
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.8e-79 301.2 428 45.8
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 4.0e-79 300.1 608 37.5
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 4.0e-79 300.1 665 36.8
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 5.2e-79 299.7 585 39.5
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 1.5e-78 298.1 627 37.8
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.4e-78 297.0 615 38.2
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.6e-78 295.8 268 61.6
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.3e-77 295.0 532 41.0
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 2.9e-77 293.9 494 42.9
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 4.9e-77 293.1 632 35.3
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.9e-76 291.2 268 61.9
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.9e-76 291.2 642 37.2
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 4.2e-76 290.0 613 36.5
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 3.5e-75 287.0 754 34.7
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 6.0e-75 286.2 625 36.5
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 6.0e-75 286.2 651 35.8
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.3e-74 285.0 608 35.4
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 3.9e-74 283.5 653 35.5
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 7.3e-73 279.3 635 35.7
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 9.6e-73 278.9 632 35.3
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 5.3e-71 273.1 425 41.9
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 5.8e-70 269.6 634 36.1
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.3e-69 268.5 276 58.0
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.3e-69 268.5 276 58.0
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.7e-69 268.1 627 37.0
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 1.7e-69 268.1 617 35.3
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 8.4e-69 265.8 643 35.0
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 2.4e-68 264.2 609 35.6
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 9.3e-68 262.3 609 36.1
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 1.3e-66 258.5 551 40.1
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.9e-65 254.6 266 55.3
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 4.8e-64 250.0 634 33.9
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 8.1e-64 249.2 626 32.9
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.4e-63 248.4 475 38.7
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 1.5e-62 245.0 607 34.8
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 4.5e-62 243.4 640 33.9
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 3.5e-59 233.8 504 37.7
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 4.6e-59 233.4 623 33.2
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.8e-58 231.5 221 62.9
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 5.1e-58 229.9 647 33.1
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.1e-57 228.8 216 63.0
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 3.4e-54 217.2 570 31.8
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 2.2e-53 214.5 299 45.2
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.1e-47 195.7 612 30.7
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 9.0e-47 192.6 334 39.2
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 7.6e-46 189.5 284 44.0
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.3e-45 188.7 231 47.6
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.7e-45 188.3 625 29.6
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.5e-45 186.4 320 41.9
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 2.7e-43 181.0 464 34.7
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.9e-41 174.9 451 34.4
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 1.1e-39 169.1 181 58.0
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 5.3e-39 166.8 258 41.5
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 6.9e-39 166.4 421 30.4
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.8e-34 151.8 179 49.7
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.1e-33 149.1 614 28.2
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.8e-32 144.4 280 36.8
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.0e-29 136.0 122 64.8
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 7.2e-28 129.8 109 65.1
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 2.2e-24 118.2 534 27.7
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 2.2e-24 118.2 295 29.5
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.7e-24 117.5 187 42.2
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 8.2e-24 116.3 118 56.8
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 3.5e-22 110.9 224 37.1
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.2e-21 108.2 246 35.4
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 7.2e-20 103.2 82 65.9
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.4e-17 94.0 191 34.0
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 2.2e-16 91.7 91 53.8
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 8.2e-16 89.7 90 55.6
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 1.1e-15 89.4 176 38.6
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 5.3e-15 87.0 57 73.7
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 4.5e-14 84.0 76 63.2
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 3.8e-13 80.9 207 30.0
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.9e-12 78.6 115 43.5
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 8.0e-11 73.2 129 37.2
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.2e-10 70.5 120 39.2
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 5.2e-10 70.5 49 67.3
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 5.2e-10 70.5 49 67.3
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 5.2e-10 70.5 378 24.3
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.5e-09 68.9 123 38.2
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 2.6e-09 68.2 102 42.2
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 1.3e-08 65.9 142 38.0
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 3.7e-08 64.3 46 63.0
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.1e-07 62.8 160 31.9
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 4.1e-07 60.8 352 26.4
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 5.4e-07 60.5 66 50.0
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 1.2e-06 59.3 59 45.8
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 2.0e-06 58.5 65 44.6
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 2.0e-06 58.5 150 34.7
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 2.7e-06 58.2 46 52.2
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.7e-06 58.2 97 43.3
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 3.5e-06 57.8 128 38.3


User provided reference genes

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