Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064600.3 Solanum lycopersicum HOM05D000009 ORTHO05D012364 8.0e-100 367.1 184 100.0
PGSC0003DMG400008588 Solanum tuberosum HOM05D000009 ORTHO05D000008 6.5e-33 144.8 161 53.4
Sopen08g024300 Solanum pennellii HOM05D000009 ORTHO05D000008 1.1e-16 90.9 161 37.9
Medtr6g046450 Medicago truncatula HOM05D000009 ORTHO05D000008 4.2e-16 89.0 167 35.3
Cc08_g04240 Coffea canephora HOM05D000009 ORTHO05D012472 7.9e-15 84.7 187 34.8
PGSC0003DMG400029590 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.8e-14 83.6 71 62.0
Medtr0133s0030 Medicago truncatula HOM05D000009 ORTHO05D000008 3.9e-14 82.4 204 31.9
PGSC0003DMG401030883 Solanum tuberosum HOM05D000009 ORTHO05D000008 5.1e-14 82.0 175 33.7
TPR.G10881 Trifolium pratense HOM05D000009 ORTHO05D000008 2.2e-12 76.6 161 32.9
TPR.G24032 Trifolium pratense HOM05D000009 ORTHO05D000008 2.2e-12 76.6 161 33.5
TPR.G5098 Trifolium pratense HOM05D000009 ORTHO05D000008 2.8e-12 76.3 159 33.3
PGSC0003DMG400039970 Solanum tuberosum HOM05D000009 ORTHO05D000008 6.3e-12 75.1 165 33.9
TPR.G10597 Trifolium pratense HOM05D000009 ORTHO05D000008 8.2e-12 74.7 161 32.3
Medtr4g126000 Medicago truncatula HOM05D000009 ORTHO05D000008 1.1e-11 74.3 159 33.3
Medtr5g071823 Medicago truncatula HOM05D000009 ORTHO05D000008 1.4e-11 73.9 161 31.1
Medtr5g071850 Medicago truncatula HOM05D000009 ORTHO05D000008 1.4e-11 73.9 161 31.1
TPR.G34427 Trifolium pratense HOM05D000009 ORTHO05D012364 1.8e-11 73.6 146 36.3
Phvul.002G129700 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 2.4e-11 73.2 222 28.8
TPR.G20861 Trifolium pratense HOM05D000009 ORTHO05D000008 5.3e-11 72.0 161 32.3
Medtr1g022380 Medicago truncatula HOM05D000009 ORTHO05D000008 7.0e-11 71.6 161 31.1
Solyc09g059840.1 Solanum lycopersicum HOM05D000009 ORTHO05D000008 9.1e-11 71.2 71 53.5
Cc00_g27700 Coffea canephora HOM05D000009 ORTHO05D000008 1.2e-10 70.9 161 34.8
TPR.G24040 Trifolium pratense HOM05D000009 ORTHO05D000008 2.0e-10 70.1 161 30.4
Medtr5g040900 Medicago truncatula HOM05D000009 ORTHO05D000008 3.5e-10 69.3 146 33.6
Phvul.002G129200 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 5.9e-10 68.6 206 28.2
VMungo1215G0862 Vigna mungo HOM05D000009 ORTHO05D000008 7.7e-10 68.2 205 30.7
Medtr0256s0050 Medicago truncatula HOM05D000009 ORTHO05D000008 1.0e-09 67.8 200 30.5
TPR.G40093 Trifolium pratense HOM05D000009 ORTHO05D000008 1.3e-09 67.4 214 26.2
TPR.G15797 Trifolium pratense HOM05D000009 ORTHO05D000008 2.2e-09 66.6 164 29.9
vmacro08036 Vaccinium macrocarpon HOM05D027456 ORTHO05D022297 2.9e-09 66.2 185 30.8
Phvul.002G131200 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 3.8e-09 65.9 211 27.5
VMungo1215G0881 Vigna mungo HOM05D000009 ORTHO05D000008 3.8e-09 65.9 188 30.9
Hma1.2p1_0058F.1_g032440 Hydrangea macrophylla HOM05D000009 ORTHO05D004635 5.0e-09 65.5 157 29.3
Medtr0133s0020 Medicago truncatula HOM05D000009 ORTHO05D000008 5.0e-09 65.5 200 28.0
VMungo1215G0643 Vigna mungo HOM05D000009 ORTHO05D000008 5.0e-09 65.5 206 30.1
Manes.09G019701 Manihot esculenta HOM05D000009 ORTHO05D000008 6.5e-09 65.1 163 33.7
Manes.09G019801 Manihot esculenta HOM05D000009 ORTHO05D000008 6.5e-09 65.1 163 33.7
Phvul.002G130666 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 6.5e-09 65.1 203 29.1
Hma1.2p1_0924F.1_g237270 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 8.5e-09 64.7 142 28.2
Medtr0144s0010 Medicago truncatula HOM05D000009 ORTHO05D000008 8.5e-09 64.7 222 26.6
Medtr5g071780 Medicago truncatula HOM05D000009 ORTHO05D000008 8.5e-09 64.7 161 30.4
Phvul.002G130100 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 8.5e-09 64.7 212 27.4
Hma1.2p1_1755F.1_g300960 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.1e-08 64.3 183 31.7
Medtr5g071220 Medicago truncatula HOM05D000009 ORTHO05D000008 1.1e-08 64.3 170 30.0
Medtr6g052760 Medicago truncatula HOM05D000009 ORTHO05D000008 1.1e-08 64.3 214 27.1
Cc00_g11560 Coffea canephora HOM05D000009 ORTHO05D000008 1.9e-08 63.5 142 34.5
Medtr6g052455 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-08 63.5 203 29.1
Medtr7g071940 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-08 63.5 149 28.2
TPR.G10308 Trifolium pratense HOM05D000009 ORTHO05D012472 2.5e-08 63.2 169 32.0
Dinv29053 Davidia involucrata HOM05D061432 ORTHO05D000008 3.2e-08 62.8 71 50.7
Hma1.2p1_0924F.1_g237240 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 3.2e-08 62.8 135 28.1
PGSC0003DMG400009324 Solanum tuberosum HOM05D000009 ORTHO05D000008 4.2e-08 62.4 49 53.1
Cc01_g00470 Coffea canephora HOM05D000009 ORTHO05D000008 5.5e-08 62.0 169 31.4
Manes.09G019900 Manihot esculenta HOM05D000009 ORTHO05D000008 5.5e-08 62.0 177 31.6
Phvul.002G129900 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 5.5e-08 62.0 204 28.9
Phvul.002G131000 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 5.5e-08 62.0 149 32.9
Cc08_g04160 Coffea canephora HOM05D000009 ORTHO05D000008 7.2e-08 61.6 189 31.2
Dinv03128 Davidia involucrata HOM05D000009 ORTHO05D000008 7.2e-08 61.6 199 30.7
Migut.A00566 Erythranthe guttata HOM05D000009 ORTHO05D000008 7.2e-08 61.6 190 31.1
FvH4_1g23030 Fragaria vesca HOM05D000009 ORTHO05D000008 7.2e-08 61.6 193 31.6
CSS0029174 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 9.4e-08 61.2 139 33.8
MD14G1072100 Malus domestica HOM05D000009 ORTHO05D000008 9.4e-08 61.2 159 32.1
Medtr5g037460 Medicago truncatula HOM05D000009 ORTHO05D000008 9.4e-08 61.2 131 35.1
Medtr5g071670 Medicago truncatula HOM05D000009 ORTHO05D000008 9.4e-08 61.2 142 28.2
EL10Ac4g07889 Beta vulgaris HOM05D000009 ORTHO05D000008 1.2e-07 60.8 164 29.9
Ciclev10007328m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.2e-07 60.8 139 29.5
Manes.10G112309 Manihot esculenta HOM05D000009 ORTHO05D000008 1.2e-07 60.8 198 30.3
QL11p012087 Quercus lobata HOM05D000009 ORTHO05D000008 1.2e-07 60.8 134 31.3
Medtr8g036195 Medicago truncatula HOM05D000009 ORTHO05D000008 1.6e-07 60.5 195 28.2
CANSAT54G2752 Cannabis sativa HOM05D000009 ORTHO05D000008 2.1e-07 60.1 207 28.5
Cc08_g05270 Coffea canephora HOM05D000009 ORTHO05D000008 2.1e-07 60.1 189 30.7
Lj5C512T4 Lonicera japonica HOM05D000009 ORTHO05D000008 2.1e-07 60.1 194 29.4
Medtr0511s0020 Medicago truncatula HOM05D000009 ORTHO05D000008 2.1e-07 60.1 226 25.7
TPR.G13508 Trifolium pratense HOM05D000009 ORTHO05D000008 2.1e-07 60.1 205 24.9
CAN.G220.71 Capsicum annuum HOM05D000009 ORTHO05D000008 2.7e-07 59.7 185 30.3
FvH4_6g48850 Fragaria vesca HOM05D000009 ORTHO05D004635 2.7e-07 59.7 159 32.1
Medtr5g070960 Medicago truncatula HOM05D000009 ORTHO05D000008 2.7e-07 59.7 156 30.1
Prupe.6G129800 Prunus persica HOM05D000009 ORTHO05D000008 2.7e-07 59.7 161 34.8
CANSAT54G0510 Cannabis sativa HOM05D000009 ORTHO05D000008 3.6e-07 59.3 215 24.7
CANSAT54G2488 Cannabis sativa HOM05D000009 ORTHO05D000008 3.6e-07 59.3 215 24.7
Dinv03134 Davidia involucrata HOM05D000009 ORTHO05D000008 3.6e-07 59.3 177 28.2
Medtr4g055630 Medicago truncatula HOM05D000009 ORTHO05D000008 3.6e-07 59.3 159 30.2
arahy.Tifrunner.gnm1.ann1.GB2WAI Arachis hypogaea HOM05D000009 ORTHO05D000008 4.7e-07 58.9 222 24.8
arahy.Tifrunner.gnm1.ann1.QIQ4VJ Arachis hypogaea HOM05D000009 ORTHO05D000008 4.7e-07 58.9 222 24.8
FAN02G0362 Fragaria x ananassa HOM05D000009 ORTHO05D000008 4.7e-07 58.9 161 31.1
Gohir.A11G317700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.7e-07 58.9 181 31.5
Hma1.2p1_0839F.1_g226450 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 4.7e-07 58.9 195 27.2
Medtr3g086080 Medicago truncatula HOM05D000009 ORTHO05D048949 4.7e-07 58.9 156 29.5
Phvul.002G130600 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 4.7e-07 58.9 214 27.6
QL12p011837 Quercus lobata HOM05D000009 ORTHO05D000008 4.7e-07 58.9 159 31.4
Solyc08g075640.4 Solanum lycopersicum HOM05D000009 ORTHO05D000008 4.7e-07 58.9 69 49.3
Aqoxy1G02580 Aquilegia oxysepala HOM05D000009 ORTHO05D000008 6.1e-07 58.5 145 33.8
Hma1.2p1_1755F.1_g300950 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 6.1e-07 58.5 142 31.0
Potri.017G143820 Populus trichocarpa HOM05D000009 ORTHO05D000008 6.1e-07 58.5 170 28.2
Rhsim09G0040600 Rhododendron simsii HOM05D000009 ORTHO05D000008 6.1e-07 58.5 169 33.1
TPR.G5112 Trifolium pratense HOM05D000009 ORTHO05D000008 6.1e-07 58.5 65 50.8
Ca_05627_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 8.0e-07 58.2 141 28.4
Lj9C287G5 Lonicera japonica HOM05D000009 ORTHO05D000008 8.0e-07 58.2 163 29.4
Manes.09G022810 Manihot esculenta HOM05D000009 ORTHO05D000008 8.0e-07 58.2 52 50.0
Manes.09G022900 Manihot esculenta HOM05D000009 ORTHO05D000008 8.0e-07 58.2 52 50.0
Manes.09G022950 Manihot esculenta HOM05D000009 ORTHO05D012364 8.0e-07 58.2 52 50.0
Prupe.6G130000 Prunus persica HOM05D000009 ORTHO05D000008 8.0e-07 58.2 188 31.9
QL04p003342 Quercus lobata HOM05D000009 ORTHO05D000008 8.0e-07 58.2 171 29.2
Solyc08g076000.4 Solanum lycopersicum HOM05D000009 ORTHO05D000008 8.0e-07 58.2 49 49.0
Hma1.2p1_0924F.1_g237170 Hydrangea macrophylla HOM05D000009 ORTHO05D036403 1.0e-06 57.8 160 26.2
Hma1.2p1_1755F.1_g300990 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.0e-06 57.8 160 26.9
Hma1.2p1_1755F.1_g301010 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.0e-06 57.8 160 26.2
RhsimUnG0000600 Rhododendron simsii HOM05D000009 ORTHO05D000008 1.0e-06 57.8 188 33.0
Medtr5g072140 Medicago truncatula HOM05D000009 ORTHO05D000008 1.4e-06 57.4 71 49.3
QL09p004808 Quercus lobata HOM05D013254 ORTHO05D012364 1.4e-06 57.4 52 51.9
TPR.G13493 Trifolium pratense HOM05D000009 ORTHO05D000008 1.4e-06 57.4 185 27.0
GSVIVG01032150001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.4e-06 57.4 142 33.1
GSVIVG01032183001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.4e-06 57.4 135 34.8
arahy.Tifrunner.gnm1.ann1.AV4GH3 Arachis hypogaea HOM05D000009 ORTHO05D000008 1.8e-06 57.0 210 24.3
arahy.Tifrunner.gnm1.ann1.K4R7NK Arachis hypogaea HOM05D000009 ORTHO05D000008 1.8e-06 57.0 210 24.3
Eucgr.E03696 Eucalyptus grandis HOM05D000009 ORTHO05D000008 1.8e-06 57.0 185 28.6
Eucgr.K01877 Eucalyptus grandis HOM05D000009 ORTHO05D000008 1.8e-06 57.0 163 30.1
Nn4g24346 Nelumbo nucifera HOM05D000009 ORTHO05D025880 1.8e-06 57.0 193 28.0
Psat2g111800 Pisum sativum HOM05D000009 ORTHO05D000008 1.8e-06 57.0 170 27.6
Sopen08g024640 Solanum pennellii HOM05D000009 ORTHO05D000008 1.8e-06 57.0 49 49.0
AUR62010202 Chenopodium quinoa HOM05D000009 ORTHO05D016219 2.3e-06 56.6 136 31.6
MBI13_g00556_MAGBIO Magnolia biondii HOM05D000009 ORTHO05D006588 2.3e-06 56.6 46 54.3
Medtr0511s0010 Medicago truncatula HOM05D000009 ORTHO05D036555 2.3e-06 56.6 158 30.4
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 2.3e-06 56.6 142 29.6
Nn4g24700 Nelumbo nucifera HOM05D000009 ORTHO05D000008 2.3e-06 56.6 201 27.4
QL04p008657 Quercus lobata HOM05D000030 ORTHO05D000009 2.3e-06 56.6 153 30.1
Zm00001eb291370 Zea mays HOM05D000009 ORTHO05D000008 2.3e-06 56.6 188 30.9
Atru.chr1.3962 Acer truncatum HOM05D000009 ORTHO05D000008 3.0e-06 56.2 234 25.2
CAN.G710.21 Capsicum annuum HOM05D000009 ORTHO05D011077 3.0e-06 56.2 176 32.4
Ca_18293_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 3.0e-06 56.2 156 32.1
COL.COLO4_30578 Corchorus olitorius HOM05D000009 ORTHO05D000008 3.0e-06 56.2 180 28.3
ECA248G2570 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.0e-06 56.2 58 46.6
Migut.A00563 Erythranthe guttata HOM05D000009 ORTHO05D000008 3.0e-06 56.2 190 31.1
Gohir.D11G335100 Gossypium hirsutum HOM05D000009 ORTHO05D000008 3.0e-06 56.2 180 31.1
Hma1.2p1_1168F.1_g263080 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 3.0e-06 56.2 156 31.4
MBI13_g38967_MAGBIO Magnolia biondii HOM05D000009 ORTHO05D000008 3.0e-06 56.2 46 56.5
QL04p021400 Quercus lobata HOM05D000009 ORTHO05D000008 3.0e-06 56.2 159 30.2
CSS0040544 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 4.0e-06 55.8 50 48.0
Gohir.A11G317566 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.0e-06 55.8 53 47.2
Gorai.007G365300 Gossypium raimondii HOM05D000009 ORTHO05D000008 4.0e-06 55.8 187 27.8
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 4.0e-06 55.8 166 24.7
TPR.G16965 Trifolium pratense HOM05D000009 ORTHO05D000008 4.0e-06 55.8 156 30.8
EL10Ac4g07895 Beta vulgaris HOM05D000009 ORTHO05D000008 5.2e-06 55.5 164 29.3
Glyma.13G192100 Glycine max HOM05D000009 ORTHO05D000008 5.2e-06 55.5 205 28.3
Manes.09G023200 Manihot esculenta HOM05D000009 ORTHO05D000008 5.2e-06 55.5 52 48.1
Os02g0150600 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012472 5.2e-06 55.5 156 28.8
QL04p013916 Quercus lobata HOM05D000009 ORTHO05D000008 5.2e-06 55.5 184 31.5
arahy.Tifrunner.gnm1.ann1.U433IA Arachis hypogaea HOM05D000009 ORTHO05D000008 6.7e-06 55.1 152 30.9
CSS0049384 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 6.7e-06 55.1 137 31.4
Ciclev10023598m.g Citrus clementina HOM05D000009 ORTHO05D000008 6.7e-06 55.1 191 29.3
Cc00_g11540 Coffea canephora HOM05D000009 ORTHO05D000008 6.7e-06 55.1 174 31.6
Lj9C284T0 Lonicera japonica HOM05D000009 ORTHO05D000008 6.7e-06 55.1 163 29.4
PGR044G0503 Punica granatum HOM05D000009 ORTHO05D000008 6.7e-06 55.1 168 28.0
Sabra09G0116900 Salix brachista HOM05D000009 ORTHO05D000008 6.7e-06 55.1 52 46.2
vmacro23306 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 6.7e-06 55.1 71 43.7
VMungo1215G3421 Vigna mungo HOM05D000009 ORTHO05D000008 6.7e-06 55.1 148 29.7
Duzib151G1042 Durio zibethinus HOM05D000009 ORTHO05D000008 8.8e-06 54.7 158 27.2
Duzib235G0238 Durio zibethinus HOM05D000009 ORTHO05D000008 8.8e-06 54.7 179 29.6
Hma1.2p1_1604F.1_g293230 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 8.8e-06 54.7 158 33.5
Lj9C292G2 Lonicera japonica HOM05D000009 ORTHO05D000008 8.8e-06 54.7 164 28.0
Medtr3g086070 Medicago truncatula HOM05D000009 ORTHO05D000008 8.8e-06 54.7 200 28.0
Psat7g093800 Pisum sativum HOM05D000009 ORTHO05D000008 8.8e-06 54.7 156 31.4
Potri.017G140132 Populus trichocarpa HOM05D000009 ORTHO05D000008 8.8e-06 54.7 52 42.3
TPR.G24039 Trifolium pratense HOM05D000009 ORTHO05D000008 8.8e-06 54.7 161 26.7
TPR.G28373 Trifolium pratense HOM05D000009 ORTHO05D000008 8.8e-06 54.7 158 29.1


User provided reference genes

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