Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064460.1 Solanum lycopersicum HOM05D007918 ORTHO05D010025 1.7e-70 269.2 134 100.0
Sopen09g025600 Solanum pennellii HOM05D000691 ORTHO05D000378 1.4e-53 213.0 107 96.3
PGSC0003DMG400008578 Solanum tuberosum HOM05D007918 ORTHO05D010025 1.4e-53 213.0 113 92.0
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 9.8e-39 163.7 134 64.9
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 5.8e-31 137.9 89 76.4
CiPaw.03G271500 Carya illinoinensis HOM05D007918 ORTHO05D010025 3.1e-24 115.5 87 62.1
Oeu015438.1 Olea europaea HOM05D007918 ORTHO05D010025 8.3e-22 107.5 114 50.0
Rhsim01G0260000 Rhododendron simsii HOM05D007918 ORTHO05D010025 1.2e-20 103.6 110 54.5
Glyma.19G168900 Glycine max HOM05D007918 ORTHO05D010025 7.8e-20 100.9 119 42.9
Manes.13G039200 Manihot esculenta HOM05D007918 ORTHO05D010025 3.0e-19 99.0 89 52.8
Actinidia23702 Actinidia chinensis HOM05D007918 ORTHO05D010025 5.1e-19 98.2 81 60.5
Glyma.03G167700 Glycine max HOM05D007918 ORTHO05D010025 5.1e-19 98.2 111 43.2
TAR362G0051 Trochodendron aralioides HOM05D007918 ORTHO05D010025 1.5e-18 96.7 89 53.9
Eucgr.K01423 Eucalyptus grandis HOM05D007918 ORTHO05D010025 5.6e-18 94.7 97 49.5
Lj1g0000049 Lotus japonicus HOM05D007918 ORTHO05D010025 7.3e-18 94.4 123 39.8
Sabra02G0194600 Salix brachista HOM05D007918 ORTHO05D010025 7.3e-18 94.4 82 56.1
Hma1.2p1_2127F.1_g314650 Hydrangea macrophylla HOM05D007918 ORTHO05D010025 1.2e-17 93.6 117 44.4
Cc01_g17750 Coffea canephora HOM05D007918 ORTHO05D010025 2.1e-17 92.8 116 49.1
Phvul.001G165400 Phaseolus vulgaris HOM05D007918 ORTHO05D010025 2.8e-17 92.4 123 39.0
TWI12G1379 Tripterygium wilfordii HOM05D007918 ORTHO05D010025 2.8e-17 92.4 87 51.7
Medtr7g098680 Medicago truncatula HOM05D007918 ORTHO05D010025 4.7e-17 91.7 115 41.7
TPR.G29178 Trifolium pratense HOM05D007918 ORTHO05D010025 8.1e-17 90.9 97 44.3
FvH4_2g20371 Fragaria vesca HOM05D007918 ORTHO05D010025 1.4e-16 90.1 87 49.4
FAN24G2847 Fragaria x ananassa HOM05D007918 ORTHO05D010025 1.4e-16 90.1 87 49.4
Thecc.01G249400 Theobroma cacao HOM05D007918 ORTHO05D010025 1.8e-16 89.7 110 44.5
MD05G1187800 Malus domestica HOM05D007918 ORTHO05D010025 3.1e-16 89.0 80 55.0
Atru.chr5.1868 Acer truncatum HOM05D007918 ORTHO05D010025 5.2e-16 88.2 113 48.7
Manes.12G038300 Manihot esculenta HOM05D007918 ORTHO05D010025 5.2e-16 88.2 93 48.4
Lalb_Chr25g0289821 Lupinus albus HOM05D007918 ORTHO05D010025 6.8e-16 87.8 111 38.7
FAN15G1752 Fragaria x ananassa HOM05D007918 ORTHO05D010025 8.9e-16 87.4 87 48.3
QL09p041632 Quercus lobata HOM05D007918 ORTHO05D010025 8.9e-16 87.4 117 45.3
ClCG06G001390 Citrullus lanatus HOM05D007918 ORTHO05D010025 1.5e-15 86.7 87 51.7
Potri.002G256100 Populus trichocarpa HOM05D007918 ORTHO05D010025 1.5e-15 86.7 84 51.2
Ciclev10024004m.g Citrus clementina HOM05D007918 ORTHO05D010025 2.0e-15 86.3 69 56.5
DCAR_012594 Daucus carota HOM05D000121 ORTHO05D000102 2.6e-15 85.9 77 50.6
FAN27G3434 Fragaria x ananassa HOM05D007918 ORTHO05D010025 2.6e-15 85.9 87 48.3
Migut.D00482 Erythranthe guttata HOM05D007918 ORTHO05D010025 4.4e-15 85.1 111 45.0
Lalb_Chr20g0113551 Lupinus albus HOM05D007918 ORTHO05D010025 4.4e-15 85.1 71 53.5
VMungo1383G2778 Vigna mungo HOM05D007918 ORTHO05D010025 7.6e-15 84.3 123 38.2
Gohir.A07G203900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 9.9e-15 84.0 80 50.0
Gohir.D07G209900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 9.9e-15 84.0 80 50.0
Gorai.001G237300 Gossypium raimondii HOM05D007918 ORTHO05D010025 9.9e-15 84.0 80 50.0
Lsat_1_v5_gn_8_91021 Lactuca sativa HOM05D007918 ORTHO05D010025 9.9e-15 84.0 103 48.5
Lsat_1_v5_gn_0_19161 Lactuca sativa HOM05D007918 ORTHO05D010025 1.7e-14 83.2 70 58.6
COL.COLO4_02903 Corchorus olitorius HOM05D007918 ORTHO05D010025 2.9e-14 82.4 112 41.1
HanXRQChr04g0107631 Helianthus annuus HOM05D007918 ORTHO05D010025 3.7e-14 82.0 101 44.6
Prupe.8G214800 Prunus persica HOM05D007918 ORTHO05D010025 3.7e-14 82.0 89 51.7
SalBow4G0315 Salvia bowleyana HOM05D007918 ORTHO05D010025 3.7e-14 82.0 114 43.9
Aqoxy5G00124 Aquilegia oxysepala HOM05D007918 ORTHO05D010025 6.4e-14 81.3 110 43.6
TPR.G20079 Trifolium pratense HOM05D007918 ORTHO05D010025 8.4e-14 80.9 82 48.8
Ah.08g213630 Amaranthus hybridus HOM05D000474 ORTHO05D001061 1.1e-13 80.5 91 44.0
AUR62008804 Chenopodium quinoa HOM05D000474 ORTHO05D001061 2.4e-13 79.3 79 50.6
Cpa.g.sc87.38 Carica papaya HOM05D007918 ORTHO05D010025 4.1e-13 78.6 104 46.2
DCAR_000468 Daucus carota HOM05D000121 ORTHO05D000102 4.1e-13 78.6 110 45.5
SGA_v2.0_scaffold1G00664 Striga asiatica HOM05D007918 ORTHO05D010025 4.1e-13 78.6 86 47.7
Duzib211G0621 Durio zibethinus HOM05D007918 ORTHO05D010025 7.1e-13 77.8 116 35.3
Sc05g0002860 Simmondsia chinensis HOM05D007918 ORTHO05D010025 1.2e-12 77.0 84 45.2
CsaV3_6G007330 Cucumis sativus L. HOM05D007918 ORTHO05D010025 1.6e-12 76.6 87 48.3
Nn1g03000 Nelumbo nucifera HOM05D007918 ORTHO05D010025 3.0e-11 72.4 110 37.3
Gohir.D07G159200 Gossypium hirsutum HOM05D007918 ORTHO05D010025 8.6e-11 70.9 76 44.7
Gorai.001G182300 Gossypium raimondii HOM05D007918 ORTHO05D010025 1.1e-10 70.5 97 37.1
Carub.0003s3475 Capsella rubella HOM05D007918 ORTHO05D010025 1.9e-10 69.7 104 41.3
Sed0001064 Sechium edule HOM05D007918 ORTHO05D010025 3.3e-10 68.9 107 43.9
Actinidia37556 Actinidia chinensis HOM05D000474 ORTHO05D001061 5.6e-10 68.2 71 52.1
Thhalv10002121m.g Eutrema salsugineum HOM05D007918 ORTHO05D010025 3.6e-09 65.5 74 47.3
MBI07_g21057_MAGBIO Magnolia biondii HOM05D007918 ORTHO05D010025 6.2e-09 64.7 79 46.8
C08p42250 Brassica napus HOM05D007918 ORTHO05D010025 2.4e-08 62.8 75 45.3
SGA_v2.0_scaffold138G35181 Striga asiatica HOM05D007918 ORTHO05D010025 4.0e-08 62.0 73 45.2
Gohir.A07G153050 Gossypium hirsutum HOM05D007918 ORTHO05D010025 5.2e-08 61.6 76 40.8
BcaB08g34905 Brassica carinata HOM05D007918 ORTHO05D010025 6.8e-08 61.2 101 39.6
BcaC07g41218 Brassica carinata HOM05D007918 ORTHO05D010025 6.8e-08 61.2 68 47.1
A09p58930 Brassica napus HOM05D007918 ORTHO05D010025 6.8e-08 61.2 68 47.1
BolC8t51784H Brassica oleracea HOM05D007918 ORTHO05D010025 6.8e-08 61.2 68 47.1
BraA09t41278Z Brassica rapa HOM05D007918 ORTHO05D010025 6.8e-08 61.2 68 47.1
C09p15250 Brassica napus HOM05D007918 ORTHO05D010025 8.9e-08 60.8 70 45.7
Sp3g33610 Schrenkiella parvula HOM05D007918 ORTHO05D010025 8.9e-08 60.8 68 47.1
Sed0010398 Sechium edule HOM05D007918 ORTHO05D010025 8.9e-08 60.8 109 36.7
CARHR110890 Cardamine hirsuta HOM05D007918 ORTHO05D010025 1.2e-07 60.5 75 44.0
HPP92_005006 Vanilla planifolia HOM05D007918 ORTHO05D010025 1.2e-07 60.5 42 69.0
BcaC04g22795 Brassica carinata HOM05D007918 ORTHO05D010025 1.5e-07 60.1 68 47.1
BolC9t54431H Brassica oleracea HOM05D007918 ORTHO05D010025 1.5e-07 60.1 68 47.1
BcaB07g31591 Brassica carinata HOM05D007918 ORTHO05D010025 2.0e-07 59.7 68 47.1
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 2.0e-07 59.7 68 45.6
AL3G53330 Arabidopsis lyrata HOM05D007918 ORTHO05D010025 2.6e-07 59.3 100 38.0
AT2G20362 Arabidopsis thaliana HOM05D007918 ORTHO05D010025 5.8e-07 58.2 100 38.0
A09p12860 Brassica napus HOM05D007918 ORTHO05D010025 7.6e-07 57.8 68 44.1
THA.LOC104814533 Tarenaya hassleriana HOM05D007918 ORTHO05D010025 4.9e-06 55.1 104 35.6


User provided reference genes

Program Settings