Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 3.1e-229 798.1 402 100.0
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 2.0e-228 795.4 402 99.3
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 6.9e-197 690.6 405 87.9
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.8e-190 668.7 445 78.4
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.5e-188 661.4 444 77.9
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 2.4e-181 639.0 407 79.1
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.2e-180 636.7 402 78.1
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 2.0e-180 636.0 402 78.1
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 3.4e-180 635.2 398 78.6
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 4.5e-180 634.8 402 78.6
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.7e-179 632.9 402 78.1
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 5.0e-179 631.3 402 77.1
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 6.5e-179 630.9 402 77.9
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 6.5e-179 630.9 402 78.6
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.1e-178 630.2 402 77.1
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.4e-178 629.8 402 77.6
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 1.9e-178 629.4 419 75.7
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 1.9e-178 629.4 403 78.4
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 3.2e-178 628.6 402 77.9
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 3.2e-178 628.6 402 77.4
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 4.2e-178 628.2 402 78.6
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 7.2e-178 627.5 402 76.9
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 7.2e-178 627.5 402 77.4
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.2e-177 626.7 403 78.4
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.2e-177 626.7 411 76.4
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.2e-177 626.7 402 76.4
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 3.6e-177 625.2 402 76.4
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 3.6e-177 625.2 402 77.9
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.0e-176 623.6 402 78.1
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.0e-176 623.6 402 76.6
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 2.3e-176 622.5 403 78.2
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 3.0e-176 622.1 402 75.6
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 3.0e-176 622.1 402 77.6
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 3.9e-176 621.7 398 77.1
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.9e-176 621.7 403 77.7
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 8.8e-176 620.5 402 77.4
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.1e-175 620.2 398 77.4
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 2.0e-175 619.4 402 75.9
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 2.0e-175 619.4 402 75.4
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 3.3e-175 618.6 400 77.5
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 1.3e-174 616.7 399 75.7
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 2.2e-174 615.9 402 75.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 2.8e-174 615.5 403 76.9
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 2.8e-174 615.5 402 76.1
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 2.8e-174 615.5 402 76.9
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 3.7e-174 615.1 402 76.9
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 4.8e-174 614.8 400 76.5
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 6.3e-174 614.4 402 76.9
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.1e-173 613.6 395 78.0
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.1e-173 613.6 402 75.6
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 1.1e-173 613.6 426 72.8
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.1e-173 613.6 403 76.4
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 1.8e-173 612.8 402 76.9
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 3.1e-173 612.1 402 77.1
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 4.1e-173 611.7 402 75.1
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 4.1e-173 611.7 402 76.1
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 1.6e-172 609.8 396 77.0
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 2.0e-172 609.4 402 74.4
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.5e-172 608.2 408 75.7
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 4.5e-172 608.2 402 75.9
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.0e-171 607.1 400 76.0
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 5.0e-171 604.7 404 75.5
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 1.1e-170 603.6 402 75.4
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 2.5e-170 602.4 403 75.4
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 5.5e-170 601.3 402 75.4
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 1.6e-169 599.7 404 72.8
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 2.1e-169 599.4 398 74.6
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 2.1e-169 599.4 398 74.6
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.4e-168 596.7 402 73.6
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 4.0e-168 595.1 402 73.1
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 4.0e-168 595.1 404 73.3
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 5.2e-168 594.7 403 73.0
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 6.7e-168 594.3 380 76.1
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 6.7e-168 594.3 403 72.7
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 8.8e-168 594.0 316 93.4
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 1.1e-167 593.6 402 73.1
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.1e-167 593.6 380 76.1
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.1e-167 593.6 402 73.4
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 1.5e-167 593.2 401 73.1
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 2.6e-167 592.4 404 72.5
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 2.6e-167 592.4 402 73.1
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 5.7e-167 591.3 434 70.3
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 9.7e-167 590.5 404 72.5
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.3e-166 590.1 402 73.1
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.7e-166 589.7 402 72.9
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.7e-166 589.7 402 72.9
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 2.2e-166 589.3 401 73.1
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.8e-166 588.2 498 63.3
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 6.3e-166 587.8 401 75.1
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.4e-165 586.6 380 75.8
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 3.1e-165 585.5 402 72.6
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.1e-165 585.5 403 71.2
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.1e-165 585.1 396 74.0
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 4.1e-165 585.1 420 71.9
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 5.3e-165 584.7 401 72.6
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.2e-164 583.6 401 72.6
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 1.2e-164 583.6 404 71.5
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 1.6e-164 583.2 402 72.6
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.3e-163 580.1 380 75.0
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.3e-163 580.1 392 73.7
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 1.3e-163 580.1 396 72.7
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 2.9e-163 578.9 400 73.2
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 1.1e-162 577.0 400 70.5
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 1.9e-162 576.2 419 69.5
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 3.2e-162 575.5 403 70.5
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 9.4e-162 573.9 400 72.2
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 4.0e-160 568.5 366 76.5
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 8.8e-160 567.4 453 67.8
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.1e-157 560.5 381 74.3
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.3e-155 553.5 554 55.2
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.6e-153 546.6 402 69.7
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.7e-150 535.4 355 76.9
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 6.3e-150 534.6 356 71.9
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.6e-138 495.0 329 76.6
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 3.1e-136 489.2 311 76.2
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 3.7e-134 482.3 292 79.1
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 3.9e-131 472.2 312 75.3
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 8.4e-118 427.9 391 55.2
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.1e-114 417.5 356 63.2
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 4.3e-114 415.6 386 55.4
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 3.1e-112 409.5 355 55.2
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 3.4e-111 406.0 289 72.7
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 4.2e-109 399.1 340 55.0
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.6e-100 370.5 349 52.4
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.5e-90 336.7 237 75.9
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 9.6e-82 308.1 226 69.0
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 3.4e-79 299.7 284 50.4
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.9e-74 283.9 345 42.6
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 7.9e-68 261.9 388 37.4
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 5.5e-61 239.2 239 57.3
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 6.1e-60 235.7 363 39.1
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.3e-54 218.0 129 83.7
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 4.2e-53 213.0 205 59.5
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 1.5e-50 204.5 278 49.6
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 6.8e-43 179.1 99 86.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.6e-31 141.4 80 82.5
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.0e-31 141.0 82 81.7
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.4e-27 128.3 132 55.3
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.4e-24 116.3 81 67.9
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.1e-19 102.1 65 69.2
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 1.4e-16 91.7 105 44.8
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 5.0e-14 83.2 57 73.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 1.1e-11 75.5 56 69.6
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.0e-06 58.9 46 69.6
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.0e-06 58.9 40 72.5


User provided reference genes

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