Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 8.9e-33 142.9 67 100.0
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 2.2e-31 138.3 67 97.0
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 2.2e-31 138.3 67 97.0
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 2.2e-31 138.3 67 97.0
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 2.2e-31 138.3 67 97.0
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 2.2e-31 138.3 67 97.0
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 8.4e-31 136.3 67 94.0
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 4.2e-30 134.0 67 95.5
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 88.1
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 88.1
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 85.1
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 88.1
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 88.1
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 88.1
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 88.1
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 6.6e-28 126.7 67 85.1
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 88.1
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.5e-27 124.8 67 86.6
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 85.1
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 83.6
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 85.1
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 86.6
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 86.6
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 86.6
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 86.6
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 83.6
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 9.6e-27 122.9 65 84.6
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.3e-26 122.5 67 85.1
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 2.1e-26 121.7 67 85.1
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 2.1e-26 121.7 67 85.1
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.1e-26 121.7 67 83.6
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 2.1e-26 121.7 67 86.6
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 3.6e-26 120.9 67 83.6
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 4.8e-26 120.6 67 82.1
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 6.2e-26 120.2 69 84.1
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-25 118.6 67 80.6
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 3.1e-25 117.9 62 85.5
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 1.5e-24 115.5 62 82.3
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 1.5e-24 115.5 62 82.3
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 5.8e-24 113.6 62 83.9
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 3.8e-23 110.9 61 80.3
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 1.1e-22 109.4 68 77.9
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 1.1e-22 109.4 68 77.9
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 1.4e-22 109.0 62 77.4
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 3.2e-22 107.8 67 76.1
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 7.1e-22 106.7 67 74.6
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 9.3e-22 106.3 67 74.6
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 9.3e-22 106.3 67 74.6
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.6e-21 105.5 67 76.1
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.6e-21 105.5 67 76.1
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 2.7e-21 104.8 67 71.6
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 8.7e-20 99.8 66 68.2
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.1e-19 99.4 67 76.1
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 1.5e-19 99.0 67 71.6
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 4.3e-19 97.4 56 76.8
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 7.4e-19 96.7 67 68.7
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 2.1e-18 95.1 67 68.7
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 5.3e-17 90.5 59 69.5
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 5.3e-17 90.5 47 87.2
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.5e-16 89.0 67 67.2
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 2.2e-15 85.1 51 76.5
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.4e-14 82.4 67 65.7
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.4e-14 82.4 67 64.2
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.9e-14 82.0 67 64.2
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 3.2e-14 81.3 50 72.0
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 1.2e-13 79.3 53 71.7
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 1.3e-12 75.9 51 74.5
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 1.8e-12 75.5 38 97.4
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 3.3e-11 71.2 66 56.1
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 4.3e-11 70.9 66 54.5
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 1.4e-09 65.9 37 83.8
Cre10.g462950 Chlamydomonas reinhardtii HOM05D007549 ORTHO05D009532 1.1e-06 56.2 65 46.2


User provided reference genes

Program Settings