Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 1.8e-137 492.7 257 100.0
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 5.0e-124 448.0 245 95.5
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 9.4e-123 443.7 245 94.7
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 6.1e-114 414.5 250 86.4
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 3.4e-96 355.5 216 86.6
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 3.2e-94 349.0 242 73.6
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 2.7e-93 345.9 238 74.8
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 2.7e-93 345.9 242 73.6
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 5.0e-92 341.7 242 72.3
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 2.5e-91 339.3 250 70.4
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 5.6e-91 338.2 240 72.5
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 7.3e-91 337.8 238 73.9
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 1.2e-90 337.0 239 73.2
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 1.6e-90 336.7 238 73.1
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 2.1e-90 336.3 238 73.1
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 3.6e-90 335.5 249 70.7
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 3.6e-90 335.5 238 72.3
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 6.2e-90 334.7 240 71.7
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 8.0e-90 334.3 238 71.0
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 2.3e-89 332.8 239 70.7
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 5.2e-89 331.6 240 71.2
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 8.9e-89 330.9 238 71.0
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 1.2e-88 330.5 239 71.5
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.2e-88 330.5 238 70.2
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 2.0e-88 329.7 238 69.7
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 3.4e-88 328.9 250 66.8
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 5.8e-88 328.2 238 72.3
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 7.5e-88 327.8 238 71.4
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 9.8e-88 327.4 242 69.8
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 9.8e-88 327.4 238 71.4
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.3e-87 327.0 238 69.7
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.7e-87 326.6 238 69.3
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 1.7e-87 326.6 238 68.1
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 2.2e-87 326.2 238 68.5
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.9e-87 325.9 238 70.6
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 2.9e-87 325.9 238 71.0
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 2.9e-87 325.9 238 70.2
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 6.4e-87 324.7 238 70.6
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 1.1e-86 323.9 238 70.2
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 1.4e-86 323.6 238 70.6
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 1.4e-86 323.6 243 67.9
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.9e-86 323.2 238 70.2
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 4.1e-86 322.0 240 68.3
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 4.1e-86 322.0 238 70.6
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 4.1e-86 322.0 238 68.9
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 7.0e-86 321.2 240 68.3
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 9.2e-86 320.9 238 68.9
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.2e-85 320.5 238 69.3
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 1.6e-85 320.1 230 71.3
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 1.6e-85 320.1 238 68.1
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 1.6e-85 320.1 238 68.1
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 2.0e-85 319.7 240 68.8
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 4.6e-85 318.5 238 68.1
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 4.6e-85 318.5 238 68.9
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 6.0e-85 318.2 238 68.5
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 6.0e-85 318.2 239 66.9
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 7.8e-85 317.8 238 68.1
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 1.0e-84 317.4 238 66.8
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 1.7e-84 316.6 241 70.1
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.7e-84 316.6 238 68.1
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 3.0e-84 315.8 248 65.3
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 3.0e-84 315.8 238 68.5
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 5.0e-84 315.1 261 62.8
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 5.0e-84 315.1 238 66.0
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 6.6e-84 314.7 238 68.9
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 2.5e-83 312.8 238 67.2
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 2.5e-83 312.8 238 68.1
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 4.3e-83 312.0 238 68.1
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 1.2e-82 310.5 238 66.4
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 1.6e-82 310.1 238 65.1
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 2.8e-82 309.3 238 68.1
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 1.1e-81 307.4 239 65.7
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 1.1e-81 307.4 238 66.4
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 1.8e-81 306.6 238 66.4
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 1.7e-79 300.1 230 66.5
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 3.7e-79 298.9 230 67.4
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.1e-78 297.4 250 61.6
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 7.1e-78 294.7 252 62.3
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 9.2e-78 294.3 238 61.8
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.2e-77 293.9 208 71.6
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 2.7e-77 292.7 230 65.2
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 7.8e-77 291.2 218 68.3
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.7e-76 290.0 241 61.4
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 3.9e-76 288.9 221 68.3
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 3.9e-76 288.9 228 66.7
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 1.1e-75 287.3 234 62.4
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 4.3e-75 285.4 296 55.7
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 5.6e-75 285.0 181 81.8
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 2.0e-72 276.6 199 69.8
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 4.4e-72 275.4 193 75.1
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 9.9e-72 274.2 219 63.9
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 6.4e-71 271.6 215 64.2
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.9e-70 270.0 252 58.7
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 2.1e-69 266.5 235 60.9
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 2.7e-69 266.2 215 64.7
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 2.1e-66 256.5 245 54.3
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 4.4e-64 248.8 236 54.2
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 3.2e-62 242.7 193 66.8
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 9.6e-59 231.1 237 51.1
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 5.8e-56 221.9 238 50.8
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 2.9e-55 219.5 137 85.4
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 7.1e-54 214.9 179 63.1
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 1.9e-51 206.8 230 54.3
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.7e-39 167.2 204 45.1
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 9.7e-35 151.4 131 58.8
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 4.1e-33 146.0 101 73.3
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 2.5e-30 136.7 125 56.0
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 1.2e-29 134.4 90 75.6
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.9e-28 129.4 224 37.5
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 5.7e-27 125.6 245 36.3
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 4.5e-24 115.9 250 33.6
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 4.6e-21 105.9 194 34.5
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 6.3e-18 95.5 187 36.4
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 3.7e-10 69.7 85 41.2
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 8.2e-10 68.6 96 39.6
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 8.2e-10 68.6 106 38.7
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 2.4e-09 67.0 187 31.6
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 4.1e-09 66.2 159 37.7
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 5.3e-09 65.9 154 37.7
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.2e-08 64.7 165 32.7
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 4.5e-08 62.8 169 32.5
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 4.5e-08 62.8 151 35.8
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 4.5e-08 62.8 119 37.8
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 5.9e-08 62.4 148 35.8
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 1.3e-07 61.2 146 32.9
TPR.G30901 Trifolium pratense HOM05D000868 ORTHO05D000711 1.7e-07 60.8 119 37.0
Ca_03995_v3 Cicer arietinum L. HOM05D000868 ORTHO05D000711 2.9e-07 60.1 145 35.2
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 2.9e-07 60.1 109 38.5
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 5.0e-07 59.3 109 37.6
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 5.0e-07 59.3 109 37.6
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.5e-06 57.8 147 34.7
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.5e-06 57.8 109 37.6
PRCOL_00004000 Prasinoderma coloniale HOM05D002345 ORTHO05D002460 1.9e-06 57.4 149 30.2
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 1.9e-06 57.4 133 33.8
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 1.9e-06 57.4 109 37.6
Prupe.1G019800 Prunus persica HOM05D006451 ORTHO05D007680 3.2e-06 56.6 135 34.8
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 4.2e-06 56.2 148 36.5
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 4.2e-06 56.2 133 34.6
BcaNung04069 Brassica carinata HOM05D002345 ORTHO05D002391 7.2e-06 55.5 103 34.0
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 7.2e-06 55.5 133 34.6
Lalb_Chr20g0109341 Lupinus albus HOM05D000868 ORTHO05D000711 9.4e-06 55.1 113 38.9
Oeu009294.1 Olea europaea HOM05D001916 ORTHO05D003272 9.4e-06 55.1 116 37.9
THA.LOC104814751 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 9.4e-06 55.1 158 28.5


User provided reference genes

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