Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064360.1 Solanum lycopersicum HOM05D003419 ORTHO05D004113 9.0e-37 156.4 77 100.0
PGSC0003DMG400036751 Solanum tuberosum HOM05D003419 ORTHO05D004113 2.7e-09 65.1 33 87.9
Peaxi162Scf00252g00012 Petunia axillaris HOM05D003419 ORTHO05D004113 3.9e-08 61.2 33 81.8
CAN.G551.40 Capsicum annuum HOM05D003419 ORTHO05D004113 5.1e-08 60.8 33 81.8
Ca_21121_v3 Cicer arietinum L. HOM05D003419 ORTHO05D004113 5.1e-08 60.8 33 78.8
Nn2g12346 Nelumbo nucifera HOM05D003419 ORTHO05D004113 6.7e-08 60.5 33 78.8
TPR.G39243 Trifolium pratense HOM05D003419 ORTHO05D004113 8.8e-08 60.1 37 70.3
CAN.G1424.14 Capsicum annuum HOM05D003419 ORTHO05D004113 1.1e-07 59.7 33 78.8
Lj4g0013267 Lotus japonicus HOM05D003419 ORTHO05D004113 1.1e-07 59.7 33 75.8
Nitab4.5_0008286g0010 Nicotiana tabacum HOM05D003419 ORTHO05D004113 1.1e-07 59.7 33 78.8
Sopen00g009550 Solanum pennellii HOM05D003419 ORTHO05D004113 1.1e-07 59.7 33 78.8
Sopen07g001620 Solanum pennellii HOM05D003419 ORTHO05D004113 1.1e-07 59.7 33 78.8
PGSC0003DMG400011180 Solanum tuberosum HOM05D003419 ORTHO05D004113 1.1e-07 59.7 33 78.8
PGSC0003DMG400042068 Solanum tuberosum HOM05D003419 ORTHO05D004113 1.1e-07 59.7 33 81.8
Medtr4g130970 Medicago truncatula HOM05D003419 ORTHO05D004113 1.5e-07 59.3 33 75.8
VMungo1215G0436 Vigna mungo HOM05D003419 ORTHO05D004113 1.5e-07 59.3 33 75.8
Aqoxy7G03426 Aquilegia oxysepala HOM05D003419 ORTHO05D004113 2.0e-07 58.9 32 78.1
Cfa020831 Carpinus fangiana HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 75.8
Dinv41385 Davidia involucrata HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 75.8
Dinv42862 Davidia involucrata HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 75.8
Dinv43238 Davidia involucrata HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 75.8
Glyma.02G203400 Glycine max HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 75.8
Glyma.17G074300 Glycine max HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 75.8
MBI14_g24795_MAGBIO Magnolia biondii HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 75.8
Nitab4.5_0005188g0050 Nicotiana tabacum HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 78.8
Nitab4.5_0007899g0020 Nicotiana tabacum HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 78.8
PSO339G6115 Papaver somniferum HOM05D003419 ORTHO05D004113 2.0e-07 58.9 32 78.1
PSO384G4412 Papaver somniferum HOM05D003419 ORTHO05D004113 2.0e-07 58.9 32 78.1
Phvul.005G040750 Phaseolus vulgaris HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 75.8
VMungo1080G0101 Vigna mungo HOM05D003419 ORTHO05D004113 2.0e-07 58.9 33 75.8
Hma1.2p1_0222F.1_g093430 Hydrangea macrophylla HOM05D003419 ORTHO05D004113 2.6e-07 58.5 33 75.8
PGSC0003DMG400035291 Solanum tuberosum HOM05D003419 ORTHO05D004113 2.6e-07 58.5 33 78.8
Cc06_g15090 Coffea canephora HOM05D003419 ORTHO05D004113 3.3e-07 58.2 33 78.8
MSTRG.26281 Avicennia marina HOM05D003419 ORTHO05D004113 4.4e-07 57.8 32 75.0
Haze_19215 Corylus avellana HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 72.7
DCAR_019388 Daucus carota HOM05D003419 ORTHO05D004113 4.4e-07 57.8 41 63.4
FvH4_1g01020 Fragaria vesca HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 75.8
FAN23G2671 Fragaria x ananassa HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 75.8
FAN26G1223 Fragaria x ananassa HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 75.8
FAN28G1467 Fragaria x ananassa HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 75.8
Lj9P716T33 Lonicera japonica HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 75.8
Os04g0501500 Oryza sativa ssp. japonica HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 72.7
Peaxi162Scf00496g10012 Petunia axillaris HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 72.7
Phvul.003G156500 Phaseolus vulgaris HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 72.7
Zm00001eb425960 Zea mays HOM05D003419 ORTHO05D004113 4.4e-07 57.8 33 72.7
Atru.chr7.109 Acer truncatum HOM05D003419 ORTHO05D004113 5.7e-07 57.4 32 75.0
Actinidia38330 Actinidia chinensis HOM05D003419 ORTHO05D004113 5.7e-07 57.4 33 69.7
Ciclev10028452m.g Citrus clementina HOM05D003419 ORTHO05D004113 5.7e-07 57.4 32 75.0
QL02p093099 Quercus lobata HOM05D003419 ORTHO05D004113 5.7e-07 57.4 33 72.7
Rhsim01G0034600 Rhododendron simsii HOM05D003419 ORTHO05D004113 5.7e-07 57.4 33 72.7
Rhsim01G0034300 Rhododendron simsii HOM05D003419 ORTHO05D004113 7.4e-07 57.0 33 72.7
Sopen12g004960 Solanum pennellii HOM05D003419 ORTHO05D004113 7.4e-07 57.0 66 53.0
Lalb_Chr13g0300891 Lupinus albus HOM05D003419 ORTHO05D004113 9.7e-07 56.6 33 69.7
MD15G1152600 Malus domestica HOM05D003419 ORTHO05D004113 9.7e-07 56.6 28 85.7
Peaxi162Scf00165g00172 Petunia axillaris HOM05D003419 ORTHO05D004113 9.7e-07 56.6 33 75.8
Prupe.7G262000 Prunus persica HOM05D003419 ORTHO05D004113 9.7e-07 56.6 28 85.7
Solyc07g005520.1 Solanum lycopersicum HOM05D003419 ORTHO05D004113 9.7e-07 56.6 33 75.8
Actinidia04294 Actinidia chinensis HOM05D003419 ORTHO05D004113 1.3e-06 56.2 33 66.7
RcHm_v2.0_Chr2g0085761 Rosa chinensis HOM05D003419 ORTHO05D004113 1.3e-06 56.2 28 85.7
TAR383G0137 Trochodendron aralioides HOM05D003419 ORTHO05D004113 1.3e-06 56.2 33 69.7
CiPaw.15G176700 Carya illinoinensis HOM05D003419 ORTHO05D004113 1.7e-06 55.8 31 74.2
COL.COLO4_18798 Corchorus olitorius HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 66.7
Eucgr.C00354 Eucalyptus grandis HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 69.7
Gohir.A05G052300 Gossypium hirsutum HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 66.7
Gohir.D05G053800 Gossypium hirsutum HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 66.7
Gorai.009G055600 Gossypium raimondii HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 66.7
Manes.06G036400 Manihot esculenta HOM05D003419 ORTHO05D004113 1.7e-06 55.8 31 74.2
PSO478G0430 Papaver somniferum HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 72.7
PSO478G1475 Papaver somniferum HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 72.7
PSO478G3081 Papaver somniferum HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 72.7
PSO478G4260 Papaver somniferum HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 72.7
PSO478G4690 Papaver somniferum HOM05D003419 ORTHO05D004113 1.7e-06 55.8 33 72.7
CANSAT11G2069 Cannabis sativa HOM05D003419 ORTHO05D004113 2.2e-06 55.5 33 72.7
Oeu021283.1 Olea europaea HOM05D003419 ORTHO05D004113 2.2e-06 55.5 33 72.7
Rhsim01G0034800 Rhododendron simsii HOM05D003419 ORTHO05D004113 2.2e-06 55.5 33 69.7
Sopen12g004970 Solanum pennellii HOM05D003419 ORTHO05D004113 2.2e-06 55.5 41 65.9
THA.LOC104819905 Tarenaya hassleriana HOM05D003419 ORTHO05D004113 2.2e-06 55.5 33 66.7
Duzib168G1116 Durio zibethinus HOM05D003419 ORTHO05D004113 2.8e-06 55.1 33 63.6
AL4G14490 Arabidopsis lyrata HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 66.7
AT2G24240 Arabidopsis thaliana HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 66.7
CARHR117900 Cardamine hirsuta HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 66.7
Cpa.g.sc46.147 Carica papaya HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 69.7
Duzib150G1366 Durio zibethinus HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 63.6
Duzib187G1066 Durio zibethinus HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 63.6
Lsat_1_v5_gn_8_64041 Lactuca sativa HOM05D003419 ORTHO05D004113 3.7e-06 54.7 28 78.6
PSO013G0156 Papaver somniferum HOM05D003419 ORTHO05D004113 3.7e-06 54.7 32 71.9
PSO013G0308 Papaver somniferum HOM05D003419 ORTHO05D004113 3.7e-06 54.7 32 71.9
PSO013G0392 Papaver somniferum HOM05D003419 ORTHO05D004113 3.7e-06 54.7 32 71.9
Rhsim01G0034500 Rhododendron simsii HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 66.7
Solyc12g010080.1 Solanum lycopersicum HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 75.8
PGSC0003DMG400039027 Solanum tuberosum HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 75.8
PGSC0003DMG400047036 Solanum tuberosum HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 75.8
Thecc.09G031700 Theobroma cacao HOM05D003419 ORTHO05D004113 3.7e-06 54.7 33 63.6
CSS0009716 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 4.8e-06 54.3 33 66.7
CSS0020985 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 4.8e-06 54.3 33 66.7
CDE01G0752 Ceratophyllum demersum HOM05D003419 ORTHO05D004113 4.8e-06 54.3 28 75.0
AUR62037723 Chenopodium quinoa HOM05D003419 ORTHO05D004113 4.8e-06 54.3 32 68.8
PSO421G0094 Papaver somniferum HOM05D003419 ORTHO05D004113 4.8e-06 54.3 32 71.9
PSO421G0327 Papaver somniferum HOM05D003419 ORTHO05D004113 4.8e-06 54.3 32 75.0
SGA_v2.0_scaffold206G41807 Striga asiatica HOM05D003419 ORTHO05D004113 4.8e-06 54.3 33 69.7
TWI34G1449 Tripterygium wilfordii HOM05D003419 ORTHO05D004113 4.8e-06 54.3 33 66.7
Ah.12g061300 Amaranthus hybridus HOM05D003419 ORTHO05D004113 6.3e-06 53.9 31 71.0
Lalb_Chr07g0179841 Lupinus albus HOM05D003419 ORTHO05D004113 6.3e-06 53.9 33 63.6
Potri.006G185300 Populus trichocarpa HOM05D003419 ORTHO05D004113 6.3e-06 53.9 31 71.0
HPP92_017481 Vanilla planifolia HOM05D003419 ORTHO05D004113 6.3e-06 53.9 33 63.6
HPP92_017488 Vanilla planifolia HOM05D003419 ORTHO05D004113 6.3e-06 53.9 32 65.6
MSTRG.19643 Avicennia marina HOM05D003419 ORTHO05D004113 8.2e-06 53.5 33 66.7
CSS0000252 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 8.2e-06 53.5 33 66.7
Carub.0004s0351 Capsella rubella HOM05D003419 ORTHO05D004113 8.2e-06 53.5 33 63.6
MELO3C010221.2 Cucumis melo HOM05D003419 ORTHO05D004113 8.2e-06 53.5 33 66.7
CsaV3_1G028940 Cucumis sativus L. HOM05D003419 ORTHO05D004113 8.2e-06 53.5 33 66.7
HanXRQChr05g0145591 Helianthus annuus HOM05D003419 ORTHO05D004113 8.2e-06 53.5 32 68.8
Sabra18G0091600 Salix brachista HOM05D003419 ORTHO05D004113 8.2e-06 53.5 28 78.6
SHI02824 Sapria himalayana HOM05D003419 ORTHO05D004113 8.2e-06 53.5 31 71.0
Sed0021068 Sechium edule HOM05D003419 ORTHO05D004113 8.2e-06 53.5 33 66.7
TAR626G1811 Trochodendron aralioides HOM05D003419 ORTHO05D004113 8.2e-06 53.5 33 69.7


User provided reference genes

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