Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 3.4e-144 515.0 262 100.0
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 3.4e-144 515.0 262 100.0
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 3.4e-88 328.9 170 97.1
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 8.3e-66 254.6 289 57.1
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 9.8e-51 204.5 273 50.9
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 2.0e-48 196.8 272 49.3
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 8.6e-47 191.4 281 47.0
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 8.6e-47 191.4 327 43.4
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 5.6e-46 188.7 288 47.2
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 2.1e-45 186.8 279 47.7
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 2.1e-45 186.8 283 46.3
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 1.0e-44 184.5 265 46.8
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 1.4e-44 184.1 286 46.2
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 2.3e-44 183.3 288 45.8
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 2.3e-44 183.3 277 47.7
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 4.0e-44 182.6 268 48.1
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 6.8e-44 181.8 290 43.4
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 2.6e-43 179.9 287 44.3
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 4.4e-43 179.1 188 60.6
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 9.8e-43 177.9 235 52.3
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 1.3e-42 177.6 274 46.4
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 1.7e-42 177.2 233 51.1
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 6.4e-42 175.3 274 46.7
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 6.4e-42 175.3 275 45.8
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 7.0e-41 171.8 278 43.9
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 1.2e-40 171.0 235 50.6
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 1.6e-40 170.6 278 43.5
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 2.7e-40 169.9 281 47.0
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 2.7e-40 169.9 284 43.3
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 3.5e-40 169.5 185 56.8
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 3.5e-40 169.5 264 44.3
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 6.0e-40 168.7 231 50.2
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.3e-39 167.5 278 46.8
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 2.3e-39 166.8 306 43.1
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 3.0e-39 166.4 278 46.8
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 1.5e-38 164.1 284 44.7
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 2.5e-38 163.3 231 48.5
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 7.3e-38 161.8 288 45.1
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 1.2e-37 161.0 270 43.0
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 1.2e-37 161.0 281 42.7
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 2.8e-37 159.8 294 41.8
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 2.8e-37 159.8 215 49.3
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 2.3e-36 156.8 272 44.1
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 4.0e-36 156.0 292 43.2
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 4.0e-36 156.0 193 54.4
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 6.8e-36 155.2 284 42.3
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 5.8e-35 152.1 115 73.0
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 1.7e-34 150.6 236 45.3
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 3.7e-34 149.4 283 42.8
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 3.2e-33 146.4 184 52.7
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 1.2e-32 144.4 305 40.7
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 1.6e-32 144.1 289 41.5
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 7.8e-32 141.7 187 51.3
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 7.8e-32 141.7 287 41.5
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 7.8e-32 141.7 234 41.0
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.0e-31 141.4 291 39.5
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 3.0e-31 139.8 279 40.9
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 5.1e-31 139.0 172 53.5
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 5.1e-31 139.0 154 57.1
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 5.1e-31 139.0 271 39.9
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 8.6e-31 138.3 179 50.8
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 3.3e-30 136.3 189 48.1
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 4.3e-30 136.0 180 52.8
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.6e-29 134.0 187 50.3
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 4.7e-29 132.5 258 40.3
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 1.1e-28 131.3 268 40.3
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 2.3e-28 130.2 246 42.7
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 3.1e-28 129.8 190 46.3
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 3.1e-28 129.8 190 47.4
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 6.8e-28 128.6 155 51.6
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 4.4e-27 125.9 291 37.5
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 3.7e-26 122.9 252 39.3
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 8.3e-26 121.7 289 35.3
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 4.1e-25 119.4 296 35.1
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.1e-24 117.1 252 38.9
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 3.5e-24 116.3 188 43.6
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 1.3e-23 114.4 279 37.6
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 1.7e-23 114.0 274 33.6
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 3.3e-22 109.8 276 36.2
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 4.3e-22 109.4 114 55.3
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 8.1e-21 105.1 276 36.2
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 1.1e-20 104.8 251 35.1
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 9.9e-19 98.2 171 42.1
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 1.7e-18 97.4 215 35.3
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 1.7e-18 97.4 197 40.6
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 2.9e-18 96.7 232 34.9
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 3.8e-18 96.3 221 38.0
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 4.9e-18 95.9 261 33.3
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.1e-17 94.7 195 41.5
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.4e-17 94.4 219 37.9
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.9e-17 94.0 279 34.8
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 3.2e-17 93.2 256 32.4
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 7.1e-17 92.0 180 41.1
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 1.2e-16 91.3 216 35.6
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 7.8e-16 88.6 256 31.6
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 1.0e-15 88.2 144 41.0
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 1.7e-15 87.4 251 31.1
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 1.7e-15 87.4 251 31.1
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 2.3e-15 87.0 254 30.3
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 3.9e-15 86.3 261 30.3
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 5.1e-15 85.9 256 30.9
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 6.6e-15 85.5 140 42.1
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 9.6e-14 81.6 182 39.0
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 1.3e-13 81.3 175 37.1
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 1.3e-13 81.3 74 56.8
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 1.3e-13 81.3 119 42.9
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 2.8e-13 80.1 163 36.8
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 1.1e-12 78.2 280 31.1
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.2e-11 74.7 173 37.6
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 1.3e-10 71.2 242 34.3
SalBow2G2623 Salvia bowleyana HOM05D000347 ORTHO05D008062 5.4e-09 65.9 252 28.6
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 1.2e-08 64.7 256 29.7
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 1.6e-08 64.3 176 38.1
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 3.9e-07 59.7 181 33.1
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 8.7e-07 58.5 73 47.9
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 1.5e-06 57.8 287 29.3


User provided reference genes

Program Settings