Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 3.0e-179 631.7 315 100.0
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 5.3e-176 620.9 315 98.4
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 5.1e-171 604.4 315 95.6
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 7.4e-146 520.8 319 81.8
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 9.7e-146 520.4 319 81.5
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.7e-145 519.6 319 81.5
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 2.7e-140 502.3 316 80.1
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.5e-133 479.9 317 73.8
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.0e-131 473.8 318 73.0
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 1.4e-131 473.4 315 73.7
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.8e-131 473.0 315 73.3
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.3e-131 472.6 315 75.9
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 6.7e-131 471.1 318 72.6
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 2.0e-130 469.5 316 74.4
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 4.4e-130 468.4 323 70.0
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 9.7e-130 467.2 322 72.0
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 9.7e-130 467.2 322 72.0
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.7e-129 466.5 320 71.6
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 4.8e-129 464.9 318 72.0
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 6.3e-129 464.5 320 71.9
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 8.2e-129 464.2 311 73.3
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.1e-128 463.8 322 71.7
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.1e-128 461.8 330 70.6
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 7.0e-128 461.1 316 70.9
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.0e-127 459.5 318 71.1
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 4.5e-127 458.4 315 72.7
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 4.5e-127 458.4 316 72.2
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 5.9e-127 458.0 313 70.0
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 5.9e-127 458.0 304 76.0
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.0e-126 457.2 298 74.5
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.3e-126 456.8 315 71.4
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.7e-126 456.4 318 73.0
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.8e-126 455.3 319 70.5
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 3.8e-126 455.3 315 72.4
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 3.8e-126 455.3 316 70.6
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 5.0e-126 454.9 320 70.6
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 8.5e-126 454.1 312 72.1
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 8.5e-126 454.1 328 68.6
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 8.5e-126 454.1 303 73.3
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 8.5e-126 454.1 315 71.7
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.1e-125 453.8 312 69.9
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.1e-125 453.8 310 71.3
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 1.9e-125 453.0 314 72.3
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.5e-125 452.6 314 70.1
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 3.2e-125 452.2 319 71.5
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 9.4e-125 450.7 312 71.8
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 9.4e-125 450.7 315 69.5
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 3.6e-124 448.7 314 70.7
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.0e-123 447.2 315 69.5
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 1.0e-123 447.2 314 71.0
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.8e-123 446.4 310 69.4
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 4.0e-123 445.3 317 70.3
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 5.2e-123 444.9 316 71.8
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 5.2e-123 444.9 305 71.5
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 8.8e-123 444.1 312 70.8
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.6e-122 442.6 319 70.8
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.7e-121 439.9 315 70.5
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 6.3e-121 438.0 315 70.2
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 8.3e-121 437.6 307 70.4
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.1e-120 437.2 314 67.8
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 5.4e-120 434.9 320 70.6
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 1.6e-119 433.3 314 67.2
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 3.5e-119 432.2 314 69.4
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 1.3e-118 430.3 321 69.8
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 3.8e-118 428.7 315 69.2
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 5.0e-118 428.3 314 68.8
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.0e-118 428.3 317 67.5
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 6.5e-118 427.9 317 67.2
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 8.6e-118 427.6 312 67.6
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 3.2e-117 425.6 315 69.2
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 7.2e-117 424.5 314 65.9
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 9.5e-117 424.1 311 66.9
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 3.6e-116 422.2 315 67.6
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 8.0e-116 421.0 342 63.5
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 8.0e-116 421.0 312 66.7
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 8.0e-116 421.0 317 66.6
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 1.0e-115 420.6 312 66.3
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 5.2e-115 418.3 282 72.3
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 8.8e-115 417.5 317 65.9
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 9.8e-114 414.1 319 65.2
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.3e-113 413.7 319 65.2
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 2.8e-113 412.5 319 64.6
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 2.8e-113 412.5 334 62.9
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 3.7e-113 412.1 324 64.2
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 1.1e-112 410.6 319 64.6
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 7.8e-111 404.4 317 63.4
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 1.0e-110 404.1 309 66.3
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 2.3e-110 402.9 312 63.8
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 6.6e-110 401.4 311 63.3
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 2.2e-105 386.3 331 58.0
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.2e-103 380.6 317 62.1
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.6e-103 380.2 313 62.0
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 3.1e-99 365.9 377 53.6
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 7.5e-98 361.3 318 59.7
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.3e-97 360.5 283 64.0
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 2.2e-97 359.8 279 64.5
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.6e-95 353.6 305 58.4
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.5e-95 352.4 307 56.7
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.7e-94 350.1 303 60.4
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.0e-94 349.4 227 74.9
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.9e-94 349.0 305 55.7
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 3.3e-93 345.9 305 55.7
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 4.3e-93 345.5 305 56.4
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.4e-91 340.5 233 71.2
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 2.5e-85 319.7 281 61.2
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 4.4e-82 308.9 233 67.4
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 9.2e-80 301.2 351 48.1
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 9.0e-75 284.6 235 60.4
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 9.3e-72 274.6 197 66.5
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 3.9e-70 269.2 336 45.2
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 5.3e-67 258.8 190 63.7
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 9.9e-66 254.6 187 67.9
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.1e-63 246.9 208 62.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 1.6e-52 210.7 220 50.0
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 4.9e-49 199.1 156 64.1
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 4.6e-47 192.6 161 62.1
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.0e-46 189.9 234 50.0
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.3e-45 186.4 290 39.7
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.0e-42 177.2 211 52.1
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 8.5e-41 171.8 127 66.9
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 9.1e-35 151.8 248 39.9
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 4.2e-32 142.9 124 60.5
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 3.0e-30 136.7 307 34.5
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 2.0e-26 124.0 121 58.7
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 3.8e-25 119.8 120 55.0
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 5.2e-22 109.4 116 51.7
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 1.1e-21 108.2 169 43.8
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 3.3e-21 106.7 121 52.1
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 7.4e-21 105.5 83 61.4
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.7e-20 104.4 73 69.9
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.8e-20 102.8 150 39.3
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 9.1e-19 98.6 69 68.1
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.2e-17 94.0 132 47.7
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 3.8e-17 93.2 70 62.9
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.9e-16 90.9 62 72.6
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 8.8e-14 82.0 89 48.3
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 7.0e-11 72.4 81 50.6
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 9.1e-11 72.0 83 48.2
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.9e-09 67.0 60 55.0
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 8.0e-07 58.9 54 57.4
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 5.2e-06 56.2 42 71.4


User provided reference genes

Program Settings