Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.4e-39 164.5 80 100.0
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 2.9e-30 134.8 80 85.0
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.8e-27 125.6 80 80.0
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.9e-27 124.4 79 75.9
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 7.4e-26 120.2 80 75.0
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.8e-25 118.2 78 74.4
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.9e-23 110.5 75 72.0
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.0e-22 109.8 79 69.6
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 1.7e-22 109.0 80 70.0
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.7e-22 109.0 79 69.6
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.0e-22 107.5 79 68.4
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 2.5e-21 105.1 80 67.5
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 1.2e-20 102.8 80 67.5
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.1e-20 102.1 79 64.6
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.7e-20 101.7 79 64.6
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 3.6e-20 101.3 80 66.2
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 4.7e-20 100.9 66 72.7
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 6.1e-20 100.5 78 60.3
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.1e-20 100.5 79 63.3
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 6.1e-20 100.5 67 73.1
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 1.0e-19 99.8 79 63.3
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.0e-19 99.8 80 65.0
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.9e-19 97.8 59 79.7
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.3e-18 94.7 78 62.8
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.8e-16 89.0 72 62.5
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 3.1e-16 88.2 79 58.2
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 4.1e-16 87.8 78 59.0
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 1.6e-15 85.9 79 55.7
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 1.6e-15 85.9 79 53.2
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 1.6e-15 85.9 79 55.7
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.6e-15 85.9 79 55.7
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.6e-15 85.1 79 50.6
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.6e-15 85.1 79 50.6
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.6e-15 85.1 79 54.4
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.6e-15 85.1 79 54.4
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 2.6e-15 85.1 79 55.7
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 2.6e-15 85.1 79 54.4
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 3.5e-15 84.7 78 53.8
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 4.5e-15 84.3 79 53.2
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 4.5e-15 84.3 79 53.2
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 5.9e-15 84.0 79 54.4
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 7.7e-15 83.6 79 53.2
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 7.7e-15 83.6 79 51.9
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 7.7e-15 83.6 79 50.6
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 1.0e-14 83.2 79 51.9
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.0e-14 83.2 66 62.1
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 1.7e-14 82.4 79 48.1
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 1.7e-14 82.4 79 54.4
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 1.7e-14 82.4 79 50.6
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.2e-14 82.0 79 50.6
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 2.9e-14 81.6 79 50.6
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 2.9e-14 81.6 79 55.7
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 2.9e-14 81.6 79 50.6
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.8e-14 81.3 60 71.7
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 5.0e-14 80.9 79 54.4
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 5.0e-14 80.9 79 54.4
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 5.0e-14 80.9 79 49.4
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 5.0e-14 80.9 73 50.7
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 6.5e-14 80.5 73 50.7
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 8.5e-14 80.1 79 50.6
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 8.5e-14 80.1 79 50.6
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 1.1e-13 79.7 79 46.8
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 1.1e-13 79.7 79 50.6
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 1.1e-13 79.7 73 50.7
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 1.5e-13 79.3 79 50.6
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 1.5e-13 79.3 79 50.6
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 1.9e-13 79.0 73 49.3
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 1.9e-13 79.0 73 49.3
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 1.9e-13 79.0 73 49.3
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 1.9e-13 79.0 73 49.3
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 1.9e-13 79.0 73 49.3
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 1.9e-13 79.0 73 49.3
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 1.9e-13 79.0 73 49.3
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 1.9e-13 79.0 78 48.7
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.9e-13 79.0 79 51.9
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 2.5e-13 78.6 79 49.4
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.5e-13 78.6 79 49.4
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 3.2e-13 78.2 79 50.6
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.2e-13 78.2 67 56.7
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 3.2e-13 78.2 73 50.7
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 5.5e-13 77.4 73 49.3
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 5.5e-13 77.4 73 52.1
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 5.5e-13 77.4 73 53.4
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 5.5e-13 77.4 73 53.4
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 5.5e-13 77.4 73 53.4
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 7.2e-13 77.0 78 48.7
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 7.2e-13 77.0 79 50.6
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.2e-13 77.0 62 58.1
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 7.2e-13 77.0 79 50.6
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 9.4e-13 76.6 79 45.6
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 1.2e-12 76.3 73 47.9
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 1.2e-12 76.3 73 49.3
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 1.2e-12 76.3 79 48.1
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 1.6e-12 75.9 79 48.1
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 2.1e-12 75.5 73 47.9
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 2.1e-12 75.5 79 48.1
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 2.1e-12 75.5 73 47.9
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 2.7e-12 75.1 73 47.9
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 2.7e-12 75.1 73 45.2
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 3.6e-12 74.7 79 43.0
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 4.7e-12 74.3 79 46.8
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 4.7e-12 74.3 79 46.8
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 6.1e-12 73.9 79 50.6
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 6.1e-12 73.9 66 47.0
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 6.1e-12 73.9 79 41.8
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 8.0e-12 73.6 78 47.4
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 8.0e-12 73.6 78 43.6
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 1.0e-11 73.2 79 45.6
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 1.8e-11 72.4 79 48.1
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 1.8e-11 72.4 71 47.9
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 1.8e-11 72.4 71 47.9
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 1.8e-11 72.4 79 46.8
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 2.3e-11 72.0 79 46.8
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 3.0e-11 71.6 79 44.3
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 4.0e-11 71.2 79 44.3
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 4.0e-11 71.2 79 46.8
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 4.0e-11 71.2 72 48.6
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 4.0e-11 71.2 79 45.6
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 4.0e-11 71.2 79 46.8
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 5.2e-11 70.9 79 45.6
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 6.7e-11 70.5 78 46.2
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 1.5e-10 69.3 79 44.3
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 2.0e-10 68.9 80 43.8
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 2.0e-10 68.9 74 48.6
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 2.6e-10 68.6 81 43.2
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 2.6e-10 68.6 73 47.9
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 2.6e-10 68.6 78 42.3
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 3.3e-10 68.2 80 43.8
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 3.3e-10 68.2 67 46.3
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 4.4e-10 67.8 78 43.6
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 5.7e-10 67.4 80 43.8
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 7.5e-10 67.0 79 46.8
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 7.5e-10 67.0 66 47.0
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 9.7e-10 66.6 79 40.5
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 9.7e-10 66.6 73 45.2
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 1.3e-09 66.2 80 42.5
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 1.7e-09 65.9 79 45.6
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.7e-09 65.9 37 78.4
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 2.2e-09 65.5 80 41.2
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 4.8e-09 64.3 80 43.8
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 4.8e-09 64.3 80 40.0
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 4.8e-09 64.3 80 41.2
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 8.2e-09 63.5 80 43.8
Solyc09g059900.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.2e-09 63.5 55 60.0
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 1.1e-08 63.2 80 45.0
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 1.1e-08 63.2 73 45.2
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 1.4e-08 62.8 73 46.6
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-08 62.8 36 80.6
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 1.8e-08 62.4 82 41.5
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 3.1e-08 61.6 78 39.7
Solyc09g060010.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.1e-08 61.6 50 60.0
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 4.1e-08 61.2 80 41.2
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 1.2e-07 59.7 78 43.6
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 1.2e-07 59.7 74 43.2
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 7.7e-07 57.0 53 47.2
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 1.0e-06 56.6 40 57.5
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 1.3e-06 56.2 53 52.8
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 1.7e-06 55.8 69 40.6
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 2.2e-06 55.5 53 47.2
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 5.0e-06 54.3 47 51.1
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 5.0e-06 54.3 80 38.8


User provided reference genes

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