Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g061510.1 Solanum lycopersicum HOM05D002565 ORTHO05D002771 1.4e-47 192.6 94 100.0
Sopen09g024380 Solanum pennellii HOM05D002565 ORTHO05D002771 1.1e-39 166.4 93 84.9
Sopen09g024570 Solanum pennellii HOM05D002565 ORTHO05D002771 2.4e-39 165.2 91 84.6
Sopen09g024530 Solanum pennellii HOM05D002565 ORTHO05D002771 2.0e-38 162.2 93 84.9
Sopen09g024550 Solanum pennellii HOM05D002565 ORTHO05D002771 2.2e-37 158.7 93 83.9
Sopen09g024370 Solanum pennellii HOM05D002565 ORTHO05D002771 2.4e-36 155.2 93 81.7
Sopen09g024190 Solanum pennellii HOM05D002565 ORTHO05D002771 4.3e-33 144.4 80 87.5
PGSC0003DMG400029244 Solanum tuberosum HOM05D002565 ORTHO05D002771 1.6e-27 125.9 93 73.1
Solyc09g061350.1 Solanum lycopersicum HOM05D002565 ORTHO05D002771 1.0e-26 123.2 73 80.8
Sopen06g019330 Solanum pennellii HOM05D002565 ORTHO05D002771 1.3e-26 122.9 93 67.7
PGSC0003DMG400016305 Solanum tuberosum HOM05D002565 ORTHO05D002771 3.0e-26 121.7 93 66.7
Sopen06g019300 Solanum pennellii HOM05D002565 ORTHO05D002771 1.1e-25 119.8 93 66.7
Solyc06g054150.1 Solanum lycopersicum HOM05D002565 ORTHO05D002771 2.4e-23 112.1 88 64.8
Peaxi162Scf00192g00114 Petunia axillaris HOM05D002565 ORTHO05D002771 2.4e-15 85.5 93 58.1
Nitab4.5_0028601g0010 Nicotiana tabacum HOM05D002565 ORTHO05D002771 1.3e-13 79.7 110 46.4
Sopen03g001210 Solanum pennellii HOM05D002565 ORTHO05D002771 2.2e-13 79.0 84 53.6
PGSC0003DMG400013433 Solanum tuberosum HOM05D002565 ORTHO05D002771 2.2e-13 79.0 88 53.4
Nitab4.5_0001920g0030 Nicotiana tabacum HOM05D002565 ORTHO05D002771 2.9e-13 78.6 96 52.1
Solyc09g082150.1 Solanum lycopersicum HOM05D002565 ORTHO05D002771 7.2e-12 73.9 91 49.5
Sopen09g031030 Solanum pennellii HOM05D002565 ORTHO05D002771 7.2e-12 73.9 91 49.5
PGSC0003DMG400032275 Solanum tuberosum HOM05D002565 ORTHO05D002771 1.6e-11 72.8 91 50.5
Nitab4.5_0000559g0020 Nicotiana tabacum HOM05D002565 ORTHO05D002771 2.7e-11 72.0 87 50.6
Nitab4.5_0014926g0010 Nicotiana tabacum HOM05D002565 ORTHO05D002771 3.6e-11 71.6 85 49.4
AL3G32630 Arabidopsis lyrata HOM05D002565 ORTHO05D002771 6.1e-11 70.9 70 55.7
AL3G36840 Arabidopsis lyrata HOM05D002565 ORTHO05D002771 6.1e-11 70.9 70 55.7
AT3G22530 Arabidopsis thaliana HOM05D002565 ORTHO05D002771 6.1e-11 70.9 70 55.7
Sp3g20290 Schrenkiella parvula HOM05D002565 ORTHO05D002771 1.0e-10 70.1 67 55.2
Dinv14002 Davidia involucrata HOM05D002565 ORTHO05D002771 1.8e-10 69.3 87 48.3
Aa31LG8G9080 Aethionema arabicum HOM05D002565 ORTHO05D002771 2.3e-10 68.9 79 49.4
Lj6P607T19 Lonicera japonica HOM05D002565 ORTHO05D002771 2.3e-10 68.9 81 51.9
Sopen06g019320 Solanum pennellii HOM05D002565 ORTHO05D002771 2.3e-10 68.9 61 60.7
MD13G1194500 Malus domestica HOM05D002565 ORTHO05D002771 3.0e-10 68.6 86 48.8
A05p26230 Brassica napus HOM05D002565 ORTHO05D002771 5.1e-10 67.8 95 47.4
Peaxi162Scf00092g00064 Petunia axillaris HOM05D002565 ORTHO05D002771 5.1e-10 67.8 87 49.4
BraA05t21499Z Brassica rapa HOM05D002565 ORTHO05D002771 6.7e-10 67.4 96 46.9
Psat6g206880 Pisum sativum HOM05D002565 ORTHO05D002771 6.7e-10 67.4 73 53.4
Cc03_g03910 Coffea canephora HOM05D002565 ORTHO05D002771 1.5e-09 66.2 94 45.7
FAN17G2015 Fragaria x ananassa HOM05D002565 ORTHO05D002771 1.5e-09 66.2 87 43.7
FvH4_4g16300 Fragaria vesca HOM05D002565 ORTHO05D002771 2.0e-09 65.9 89 43.8
FAN07G2564 Fragaria x ananassa HOM05D002565 ORTHO05D002771 2.0e-09 65.9 89 43.8
FAN12G0739 Fragaria x ananassa HOM05D002565 ORTHO05D002771 2.0e-09 65.9 89 43.8
arahy.Tifrunner.gnm1.ann1.S2KCIC Arachis hypogaea HOM05D002565 ORTHO05D002771 2.5e-09 65.5 100 44.0
Dinv44543 Davidia involucrata HOM05D002565 ORTHO05D002771 2.5e-09 65.5 76 50.0
Prupe.1G015400 Prunus persica HOM05D002565 ORTHO05D002771 2.5e-09 65.5 87 47.1
AT4G14830 Arabidopsis thaliana HOM05D002565 ORTHO05D002771 3.3e-09 65.1 82 51.2
Carub.0003s2269 Capsella rubella HOM05D002565 ORTHO05D002771 4.3e-09 64.7 70 52.9
Medtr1g103570 Medicago truncatula HOM05D002565 ORTHO05D002771 4.3e-09 64.7 72 52.8
AL7G41020 Arabidopsis lyrata HOM05D002565 ORTHO05D002771 5.7e-09 64.3 82 50.0
Rhsim04G0201700 Rhododendron simsii HOM05D002565 ORTHO05D002771 5.7e-09 64.3 72 55.6
Sed0011212 Sechium edule HOM05D002565 ORTHO05D002771 5.7e-09 64.3 86 40.7
THA.LOC104822262 Tarenaya hassleriana HOM05D002565 ORTHO05D002771 5.7e-09 64.3 74 56.8
FAN22G1388 Fragaria x ananassa HOM05D002565 ORTHO05D002771 7.4e-09 63.9 93 43.0
Lj5g0011888 Lotus japonicus HOM05D002565 ORTHO05D002771 7.4e-09 63.9 72 48.6
Peaxi162Scf00402g00042 Petunia axillaris HOM05D002565 ORTHO05D002771 7.4e-09 63.9 74 52.7
Ciclev10006449m.g Citrus clementina HOM05D002565 ORTHO05D002771 9.7e-09 63.5 76 46.1
Glyma.10G247400 Glycine max HOM05D002565 ORTHO05D002771 9.7e-09 63.5 72 52.8
Phvul.007G058000 Phaseolus vulgaris HOM05D002565 ORTHO05D002771 9.7e-09 63.5 74 52.7
QL06p002108 Quercus lobata HOM05D002565 ORTHO05D002771 9.7e-09 63.5 70 52.9
AL862U10020 Arabidopsis lyrata HOM05D002565 ORTHO05D002771 1.3e-08 63.2 66 54.5
BcaB04g20514 Brassica carinata HOM05D002565 ORTHO05D002771 1.7e-08 62.8 69 49.3
BcaB06g26363 Brassica carinata HOM05D002565 ORTHO05D002771 1.7e-08 62.8 76 50.0
BcaC05g28041 Brassica carinata HOM05D002565 ORTHO05D002771 1.7e-08 62.8 75 50.7
BcaC09g49179 Brassica carinata HOM05D002565 ORTHO05D002771 1.7e-08 62.8 69 49.3
A01p32600 Brassica napus HOM05D002565 ORTHO05D002771 1.7e-08 62.8 69 49.3
C01p41750 Brassica napus HOM05D002565 ORTHO05D002771 1.7e-08 62.8 69 49.3
C05p40630 Brassica napus HOM05D002565 ORTHO05D002771 1.7e-08 62.8 75 50.7
BolC1t04131H Brassica oleracea HOM05D002565 ORTHO05D002771 1.7e-08 62.8 69 49.3
BolC5t32802H Brassica oleracea HOM05D002565 ORTHO05D002771 1.7e-08 62.8 75 50.7
BraA01t03388Z Brassica rapa HOM05D002565 ORTHO05D002771 1.7e-08 62.8 69 49.3
DCAR_024167 Daucus carota HOM05D002565 ORTHO05D002771 1.7e-08 62.8 77 50.6
Glyma.20G147400 Glycine max HOM05D002565 ORTHO05D002771 1.7e-08 62.8 72 52.8
SHI00453 Sapria himalayana HOM05D002565 ORTHO05D002771 1.7e-08 62.8 89 40.4
Sp7g12980 Schrenkiella parvula HOM05D002565 ORTHO05D002771 1.7e-08 62.8 86 46.5
THA.LOC104808553 Tarenaya hassleriana HOM05D002565 ORTHO05D002771 1.7e-08 62.8 76 47.4
CiPaw.02G097900 Carya illinoinensis HOM05D002565 ORTHO05D002771 3.7e-08 61.6 70 48.6
Atru.chr4.2450 Acer truncatum HOM05D002565 ORTHO05D002771 4.8e-08 61.2 67 44.8
Atru.ctg752_3.65 Acer truncatum HOM05D002565 ORTHO05D002771 4.8e-08 61.2 67 44.8
Carub.0007s2728 Capsella rubella HOM05D002565 ORTHO05D002771 4.8e-08 61.2 80 48.8
vmacro02590 Vaccinium macrocarpon HOM05D002565 ORTHO05D002771 4.8e-08 61.2 81 43.2
AL1G56850 Arabidopsis lyrata HOM05D002565 ORTHO05D002771 6.3e-08 60.8 78 47.4
Manes.03G177300 Manihot esculenta HOM05D002565 ORTHO05D002771 6.3e-08 60.8 70 42.9
Thhalv10021506m.g Eutrema salsugineum HOM05D002565 ORTHO05D002771 8.2e-08 60.5 72 50.0
Sabra08G0117500 Salix brachista HOM05D002565 ORTHO05D002771 8.2e-08 60.5 71 43.7
Sed0013199 Sechium edule HOM05D002565 ORTHO05D002771 8.2e-08 60.5 86 40.7
Haze_00886 Corylus avellana HOM05D002565 ORTHO05D002771 1.1e-07 60.1 72 48.6
CsaV3_3G013240 Cucumis sativus L. HOM05D002565 ORTHO05D002771 1.1e-07 60.1 89 39.3
CANSAT78G2523 Cannabis sativa HOM05D002565 ORTHO05D002771 1.4e-07 59.7 75 49.3
Manes.15G029800 Manihot esculenta HOM05D002565 ORTHO05D002771 1.4e-07 59.7 80 38.8
Actinidia23514 Actinidia chinensis HOM05D002565 ORTHO05D002771 1.8e-07 59.3 68 47.1
MELO3C006527.2 Cucumis melo HOM05D002565 ORTHO05D002771 1.8e-07 59.3 80 41.2
PGR004G1703 Punica granatum HOM05D002565 ORTHO05D002771 1.8e-07 59.3 70 45.7
VMungo0720G0151 Vigna mungo HOM05D002565 ORTHO05D002771 1.8e-07 59.3 72 51.4
CiPaw.01G167400 Carya illinoinensis HOM05D002565 ORTHO05D002771 2.4e-07 58.9 70 47.1
HPP92_009612 Vanilla planifolia HOM05D002565 ORTHO05D002771 2.4e-07 58.9 75 42.7
Duzib052G0131 Durio zibethinus HOM05D002565 ORTHO05D002771 3.1e-07 58.5 74 40.5
Lsat_1_v5_gn_1_120560 Lactuca sativa HOM05D002565 ORTHO05D002771 3.1e-07 58.5 87 46.0
Sc17g0001360 Simmondsia chinensis HOM05D002565 ORTHO05D002771 3.1e-07 58.5 76 47.4
CSS0003268 Camellia sinensis var. sinensis HOM05D002565 ORTHO05D002771 5.3e-07 57.8 74 47.3
CSS0018267 Camellia sinensis var. sinensis HOM05D002565 ORTHO05D002771 5.3e-07 57.8 74 47.3
DCAR_002724 Daucus carota HOM05D002565 ORTHO05D002771 5.3e-07 57.8 83 42.2
Migut.G00346 Erythranthe guttata HOM05D002565 ORTHO05D002771 5.3e-07 57.8 97 42.3
TAR636G1095 Trochodendron aralioides HOM05D002565 ORTHO05D002771 6.9e-07 57.4 69 44.9
GSVIVG01017994001 Vitis vinifera HOM05D002565 ORTHO05D002771 6.9e-07 57.4 73 42.5
BcaC05g28057 Brassica carinata HOM05D002565 ORTHO05D002771 9.1e-07 57.0 81 44.4
C05p40710 Brassica napus HOM05D002565 ORTHO05D002771 9.1e-07 57.0 81 44.4
BolC5t32816H Brassica oleracea HOM05D002565 ORTHO05D002771 9.1e-07 57.0 81 44.4
MD16G1195400 Malus domestica HOM05D002565 ORTHO05D002771 9.1e-07 57.0 66 50.0
Potri.008G154100 Populus trichocarpa HOM05D002565 ORTHO05D002771 1.2e-06 56.6 67 41.8
COL.COLO4_21491 Corchorus olitorius HOM05D002565 ORTHO05D002771 1.5e-06 56.2 74 40.5
Duzib151G1058 Durio zibethinus HOM05D002565 ORTHO05D002771 1.5e-06 56.2 74 40.5
Duzib212G0905 Durio zibethinus HOM05D002565 ORTHO05D002771 1.5e-06 56.2 74 40.5
ECA247G2012 Erigeron canadensis HOM05D002565 ORTHO05D002771 1.5e-06 56.2 95 34.7
Gohir.A09G216500 Gossypium hirsutum HOM05D002565 ORTHO05D002771 1.5e-06 56.2 85 37.6
Gohir.D09G218900 Gossypium hirsutum HOM05D002565 ORTHO05D002771 1.5e-06 56.2 85 37.6
Gorai.006G239900 Gossypium raimondii HOM05D002565 ORTHO05D002771 1.5e-06 56.2 85 37.6
Nn1g02347 Nelumbo nucifera HOM05D002565 ORTHO05D002771 1.5e-06 56.2 75 45.3
Potri.010G086400 Populus trichocarpa HOM05D002565 ORTHO05D002771 1.5e-06 56.2 67 43.3
TAR633G1375 Trochodendron aralioides HOM05D002565 ORTHO05D002771 1.5e-06 56.2 65 50.8
CARHR221410 Cardamine hirsuta HOM05D002565 ORTHO05D002771 2.0e-06 55.8 82 47.6
Eucgr.H03452 Eucalyptus grandis HOM05D002565 ORTHO05D002771 2.0e-06 55.8 74 45.9
Lalb_Chr21g0304731 Lupinus albus HOM05D002565 ORTHO05D002771 2.0e-06 55.8 65 49.2
Solyc09g065370.3 Solanum lycopersicum HOM05D002565 ORTHO05D002771 2.0e-06 55.8 86 40.7
Sopen09g027140 Solanum pennellii HOM05D002565 ORTHO05D002771 2.0e-06 55.8 86 40.7
Medtr5g006400 Medicago truncatula HOM05D002565 ORTHO05D002771 2.6e-06 55.5 67 49.3
Nn6g34081 Nelumbo nucifera HOM05D002565 ORTHO05D002771 2.6e-06 55.5 75 45.3
PGSC0003DMG400019327 Solanum tuberosum HOM05D002565 ORTHO05D002771 2.6e-06 55.5 86 41.9
Nitab4.5_0000321g0120 Nicotiana tabacum HOM05D002565 ORTHO05D002771 3.4e-06 55.1 63 46.0
Sabra10G0057300 Salix brachista HOM05D002565 ORTHO05D002771 3.4e-06 55.1 70 40.0
Thecc.04G233600 Theobroma cacao HOM05D002565 ORTHO05D002771 3.4e-06 55.1 74 40.5
Actinidia21125 Actinidia chinensis HOM05D002565 ORTHO05D002771 4.5e-06 54.7 72 47.2
Aqoxy5G00454 Aquilegia oxysepala HOM05D002565 ORTHO05D002771 4.5e-06 54.7 80 45.0
AUR62008676 Chenopodium quinoa HOM05D002565 ORTHO05D002771 4.5e-06 54.7 76 36.8
AUR62025570 Chenopodium quinoa HOM05D002565 ORTHO05D002771 4.5e-06 54.7 69 39.1
Lsat_1_v5_gn_9_22521 Lactuca sativa HOM05D002565 ORTHO05D002771 4.5e-06 54.7 80 48.8
Lj1C48T10 Lonicera japonica HOM05D002565 ORTHO05D002771 4.5e-06 54.7 66 43.9
Nitab4.5_0004318g0080 Nicotiana tabacum HOM05D002565 ORTHO05D002771 4.5e-06 54.7 72 45.8
THA.LOC104803032 Tarenaya hassleriana HOM05D002565 ORTHO05D002771 4.5e-06 54.7 76 47.4
Actinidia09120 Actinidia chinensis HOM05D002565 ORTHO05D002771 5.9e-06 54.3 90 36.7
Actinidia00776 Actinidia chinensis HOM05D002565 ORTHO05D002771 7.7e-06 53.9 90 36.7
MELO3C012655.2 Cucumis melo HOM05D002565 ORTHO05D002771 7.7e-06 53.9 74 41.9
Dinv34772 Davidia involucrata HOM05D002565 ORTHO05D002771 7.7e-06 53.9 75 41.3
Nitab4.5_0003617g0010 Nicotiana tabacum HOM05D002565 ORTHO05D002771 7.7e-06 53.9 72 44.4
SalBow2G2464 Salvia bowleyana HOM05D002565 ORTHO05D002771 7.7e-06 53.9 80 41.2


User provided reference genes

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