Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 2.1e-92 342.4 180 100.0
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 7.6e-87 323.9 180 95.6
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 1.3e-81 306.6 182 90.1
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 1.1e-53 213.8 150 81.3
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 1.1e-45 187.2 202 61.9
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 5.5e-45 184.9 199 60.8
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 9.1e-40 167.5 150 68.0
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 4.1e-32 142.1 196 48.5
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 2.7e-31 139.4 176 54.5
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 7.7e-31 137.9 140 60.0
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 1.3e-30 137.1 140 60.0
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 6.5e-30 134.8 140 56.4
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 1.1e-29 134.0 169 52.7
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 1.5e-29 133.7 156 56.4
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 3.2e-29 132.5 137 56.9
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 4.2e-29 132.1 126 60.3
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 7.2e-29 131.3 161 53.4
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 7.2e-29 131.3 146 58.9
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 9.5e-29 131.0 198 47.5
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 9.5e-29 131.0 155 51.6
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 1.6e-28 130.2 104 71.2
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 2.1e-28 129.8 128 60.9
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 3.6e-28 129.0 154 57.1
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 6.1e-28 128.3 128 57.8
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.0e-27 127.5 208 43.8
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 1.8e-27 126.7 127 63.8
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.8e-27 126.7 110 67.3
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 2.3e-27 126.3 115 64.3
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 3.0e-27 125.9 137 55.5
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 3.0e-27 125.9 136 58.1
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 5.2e-27 125.2 147 54.4
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 5.2e-27 125.2 167 46.7
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 6.8e-27 124.8 102 67.6
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 6.8e-27 124.8 102 67.6
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 8.8e-27 124.4 151 56.3
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 1.2e-26 124.0 137 52.6
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 1.2e-26 124.0 163 51.5
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 2.6e-26 122.9 130 55.4
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 3.4e-26 122.5 125 63.2
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 3.4e-26 122.5 141 54.6
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 4.4e-26 122.1 151 53.6
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 4.4e-26 122.1 166 51.2
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 5.7e-26 121.7 111 64.0
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 7.5e-26 121.3 125 60.0
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 7.5e-26 121.3 152 50.7
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 9.8e-26 120.9 153 52.3
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 9.8e-26 120.9 141 54.6
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 9.8e-26 120.9 185 45.4
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 9.8e-26 120.9 196 43.4
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 1.7e-25 120.2 128 57.8
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 2.8e-25 119.4 143 53.8
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 2.8e-25 119.4 143 54.5
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 3.7e-25 119.0 186 45.7
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 6.3e-25 118.2 170 48.2
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 6.3e-25 118.2 106 62.3
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 1.1e-24 117.5 82 74.4
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 1.1e-24 117.5 142 50.7
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 1.1e-24 117.5 130 54.6
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 1.4e-24 117.1 95 69.5
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 1.4e-24 117.1 152 48.7
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 1.4e-24 117.1 114 60.5
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.4e-24 117.1 149 51.7
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 1.8e-24 116.7 169 46.7
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.8e-24 116.7 103 63.1
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.8e-24 116.7 103 63.1
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 1.8e-24 116.7 165 49.7
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 2.4e-24 116.3 121 58.7
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 2.4e-24 116.3 117 59.0
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 2.4e-24 116.3 126 55.6
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 4.1e-24 115.5 162 48.8
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 4.1e-24 115.5 163 49.1
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 7.0e-24 114.8 99 65.7
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 9.2e-24 114.4 124 54.8
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 9.2e-24 114.4 165 46.7
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 9.2e-24 114.4 85 70.6
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 9.2e-24 114.4 90 65.6
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 9.2e-24 114.4 145 50.3
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 1.6e-23 113.6 178 44.4
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.6e-23 113.6 102 62.7
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 1.6e-23 113.6 129 58.1
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 2.0e-23 113.2 88 65.9
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 2.7e-23 112.8 120 55.0
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 3.5e-23 112.5 132 54.5
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 4.5e-23 112.1 192 41.1
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 1.0e-22 110.9 165 44.2
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 1.7e-22 110.2 101 60.4
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 1.7e-22 110.2 161 43.5
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 2.3e-22 109.8 119 53.8
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 3.8e-22 109.0 135 52.6
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 1.1e-21 107.5 161 46.6
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 1.1e-21 107.5 135 51.9
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 1.1e-21 107.5 130 52.3
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 1.9e-21 106.7 135 51.9
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 1.9e-21 106.7 147 46.9
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.2e-20 104.0 110 56.4
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 1.6e-20 103.6 170 42.4
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 2.1e-20 103.2 106 57.5
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 8.0e-20 101.3 76 69.7
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 8.0e-20 101.3 76 69.7
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 2.3e-19 99.8 175 41.7
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 2.3e-19 99.8 88 64.8
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 4.0e-19 99.0 135 45.9
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 5.2e-19 98.6 112 52.7
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 6.8e-19 98.2 75 65.3
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 6.8e-19 98.2 133 51.1
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 1.2e-18 97.4 135 48.9
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 9.8e-18 94.4 145 46.2
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 1.1e-16 90.9 130 48.5
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 1.4e-16 90.5 137 46.7
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 5.4e-16 88.6 104 51.0
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 3.5e-15 85.9 90 56.7
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 5.9e-15 85.1 66 68.2
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 3.0e-14 82.8 93 54.8
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 8.6e-14 81.3 118 44.9
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.1e-13 80.9 71 59.2
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 1.1e-13 80.9 102 51.0
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 1.9e-13 80.1 78 55.1
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 4.3e-13 79.0 170 38.8
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 5.6e-13 78.6 130 45.4
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 8.0e-12 74.7 52 73.1
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 4.0e-11 72.4 59 64.4
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 8.9e-11 71.2 70 61.4
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 8.9e-11 71.2 70 61.4
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.2e-10 70.9 68 63.2
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.2e-10 70.9 68 63.2
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 5.8e-10 68.6 99 44.4
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 1.1e-08 64.3 64 51.6
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 1.4e-08 63.9 107 39.3


User provided reference genes

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