Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 4.4e-289 997.3 514 100.0
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.4e-274 949.1 602 84.4
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 7.4e-228 793.9 519 80.3
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.3e-227 793.1 518 80.5
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.6e-188 662.5 520 69.0
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.7e-185 652.5 520 68.8
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 2.0e-180 636.3 517 66.9
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 6.6e-160 568.2 514 62.3
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 2.0e-156 556.6 520 57.5
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 5.1e-144 515.4 520 54.4
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 8.7e-144 514.6 521 54.5
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 3.1e-141 506.1 519 54.3
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 9.0e-141 504.6 521 53.6
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 1.4e-133 480.7 521 53.0
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.8e-133 480.3 485 53.4
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 6.0e-129 465.3 529 49.3
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 2.3e-128 463.4 522 50.6
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.9e-127 460.3 535 50.3
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 4.3e-127 459.1 521 50.5
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.6e-126 457.2 519 50.3
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 2.8e-126 456.4 519 50.3
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 4.8e-126 455.7 528 50.6
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 8.2e-126 454.9 520 50.2
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 2.6e-124 449.9 518 50.6
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.3e-123 447.6 519 50.3
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 6.5e-123 445.3 519 49.7
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 1.9e-122 443.7 522 50.2
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 3.2e-122 443.0 502 51.4
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 4.2e-122 442.6 519 48.7
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 1.6e-121 440.7 501 49.9
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.3e-120 436.8 492 50.6
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 3.0e-120 436.4 502 49.8
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 3.9e-120 436.0 576 46.2
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 8.7e-120 434.9 445 54.6
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 3.3e-119 433.0 490 49.8
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 4.3e-119 432.6 447 51.9
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 7.4e-119 431.8 497 51.3
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.3e-118 428.7 483 52.0
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 8.2e-118 428.3 485 51.3
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.8e-117 427.2 498 51.4
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.5e-116 424.1 521 45.1
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 2.0e-116 423.7 520 48.7
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.6e-116 423.3 524 48.7
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 2.2e-115 420.2 496 48.8
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 6.5e-115 418.7 446 53.1
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 1.4e-114 417.5 555 44.7
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 5.5e-114 415.6 440 50.7
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 5.5e-114 415.6 442 50.0
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 7.2e-114 415.2 438 52.7
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 7.9e-113 411.8 446 51.6
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 1.4e-112 411.0 442 51.1
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.4e-112 411.0 482 46.5
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 2.3e-112 410.2 442 50.0
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 3.9e-112 409.5 444 51.1
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 8.8e-112 408.3 441 50.8
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 3.3e-111 406.4 482 49.2
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 3.3e-111 406.4 441 50.1
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 5.7e-111 405.6 482 49.2
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 7.4e-111 405.2 482 49.2
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 1.7e-110 404.1 480 47.3
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.7e-110 402.9 551 46.3
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 1.8e-109 400.6 508 47.0
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 3.1e-109 399.8 483 46.6
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 6.9e-109 398.7 487 50.1
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.5e-108 397.5 482 47.1
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 2.0e-108 397.1 447 50.8
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 2.6e-108 396.7 574 43.7
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 3.4e-108 396.4 403 53.6
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 7.7e-108 395.2 506 45.5
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.0e-107 394.8 483 49.1
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 1.0e-107 394.8 481 48.2
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 2.2e-107 393.7 449 50.1
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 2.9e-107 393.3 454 50.2
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.1e-106 391.3 449 50.3
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.1e-106 391.3 449 50.3
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 1.4e-106 391.0 453 50.8
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.9e-106 390.6 493 46.2
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 2.5e-106 390.2 449 51.0
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 2.5e-106 390.2 483 48.7
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 5.5e-106 389.0 485 48.5
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 9.4e-106 388.3 450 50.0
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 4.7e-105 386.0 463 45.4
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 4.7e-105 386.0 449 50.3
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 7.9e-105 385.2 482 48.5
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 2.8e-102 376.7 500 43.8
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 4.8e-102 375.9 519 43.2
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.4e-101 374.4 447 48.8
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.0e-99 368.2 527 40.8
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 2.2e-99 367.1 497 42.3
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 3.8e-99 366.3 336 55.7
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 6.1e-97 359.0 437 48.3
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 3.1e-93 346.7 544 38.6
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 1.2e-87 328.2 374 48.7
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 9.8e-87 325.1 467 42.0
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 4.8e-86 322.8 456 41.7
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.4e-85 321.2 431 43.4
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 1.1e-82 311.6 375 44.3
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 2.5e-82 310.5 441 40.8
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 1.2e-79 301.6 377 43.5
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.2e-78 297.4 307 52.4
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 3.3e-74 283.5 204 71.6
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 9.5e-74 282.0 489 36.4
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 1.2e-71 275.0 322 51.2
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.8e-56 224.6 189 61.4
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.9e-53 214.5 545 30.6
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 8.6e-51 205.7 463 31.7
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 9.5e-50 202.2 498 31.7
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 2.0e-47 194.5 434 32.7
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.7e-46 191.4 307 38.1
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.4e-45 188.3 271 39.5
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.2e-45 187.2 307 39.1
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.7e-43 181.4 233 44.6
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 6.6e-43 179.5 142 62.0
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 1.2e-36 158.7 140 55.0
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.0e-31 141.4 125 57.6
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 5.8e-31 139.8 282 32.6
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.4e-29 135.2 191 43.5
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 4.2e-29 133.7 119 58.0
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.0e-27 129.0 235 34.0
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.7e-19 99.4 124 44.4
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 1.5e-15 88.6 140 40.7
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 4.2e-13 80.5 195 29.7
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 1.4e-08 65.5 163 30.7
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 1.2e-07 62.4 96 37.5
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.9e-07 60.1 98 32.7
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 1.0e-06 59.3 82 41.5
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.3e-06 58.9 87 37.9
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 2.9e-06 57.8 67 41.8


User provided reference genes

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