Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.9e-69 263.5 132 100.0
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.5e-57 224.9 120 95.0
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.5e-57 224.9 120 95.0
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.5e-57 224.9 120 95.0
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.5e-57 224.9 120 95.0
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.5e-57 224.9 120 95.0
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 3.5e-57 224.9 120 95.0
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 3.8e-51 204.9 120 87.5
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 3.8e-51 204.9 120 87.5
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 2.8e-46 188.7 120 80.8
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 6.2e-46 187.6 117 79.5
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 9.0e-45 183.7 118 78.8
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.2e-44 183.3 117 79.5
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 2.0e-44 182.6 119 77.3
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 4.9e-43 177.9 116 76.7
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 6.5e-43 177.6 117 77.8
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.1e-42 176.8 117 74.4
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.5e-42 174.5 117 74.4
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.5e-42 174.5 117 74.4
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 2.1e-41 172.6 117 74.4
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 4.6e-41 171.4 115 74.8
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.0e-41 171.0 118 75.4
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 7.9e-41 170.6 117 73.5
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 2.3e-40 169.1 117 73.5
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 2.3e-40 169.1 119 73.9
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-40 168.7 121 73.6
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-40 168.7 121 73.6
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-40 168.7 121 73.6
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-40 168.7 121 73.6
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-40 168.7 121 73.6
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-40 168.7 121 73.6
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 3.9e-40 168.3 117 72.6
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 3.9e-40 168.3 117 72.6
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 3.9e-40 168.3 117 72.6
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 3.9e-40 168.3 117 72.6
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.5e-39 166.4 113 73.5
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 4.3e-39 164.9 115 69.6
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 4.3e-39 164.9 123 72.4
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 7.4e-39 164.1 117 70.9
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 1.6e-38 162.9 106 75.5
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 4.8e-38 161.4 118 70.3
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 4.8e-38 161.4 118 70.3
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 4.8e-38 161.4 91 90.1
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.1e-37 160.2 113 70.8
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 3.1e-37 158.7 118 69.5
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.1e-37 158.3 119 70.6
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 4.5e-36 154.8 117 68.4
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 4.5e-36 154.8 117 70.9
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 1.0e-35 153.7 117 70.9
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 3.8e-35 151.8 117 69.2
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 3.8e-35 151.8 117 69.2
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 3.8e-35 151.8 117 69.2
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 3.8e-35 151.8 117 69.2
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.4e-34 149.8 118 68.6
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 9.3e-34 147.1 119 64.7
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.2e-30 136.0 117 62.4
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 6.3e-30 134.4 87 77.0
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.4e-29 133.3 86 75.6
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 1.8e-29 132.9 83 77.1
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.1e-29 132.1 100 68.0
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.1e-29 132.1 88 73.9
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.1e-29 131.7 81 81.5
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.9e-29 131.0 119 62.2
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 2.0e-28 129.4 99 67.7
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 3.4e-28 128.6 79 79.7
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 1.3e-27 126.7 88 71.6
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.3e-27 126.7 123 56.9
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 5.0e-27 124.8 65 92.3
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.1e-26 123.6 88 71.6
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 1.4e-26 123.2 98 66.3
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.7e-25 119.0 116 56.0
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 2.3e-24 115.9 93 66.7
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 2.2e-22 109.4 116 53.4
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-21 106.7 119 55.5
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-21 106.7 119 55.5
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.8e-21 106.3 66 74.2
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.2e-20 103.6 119 53.8
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.3e-19 100.1 58 87.9
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.7e-17 92.4 63 71.4
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 4.7e-17 91.7 80 60.0
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.4e-15 85.1 53 75.5
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 4.8e-14 81.6 71 60.6
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.0e-12 76.3 82 52.4
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 2.6e-12 75.9 71 62.0
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 1.8e-08 63.2 64 57.8
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 5.2e-08 61.6 41 73.2
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 8.2e-06 54.3 42 64.3


User provided reference genes

Program Settings