Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-110 403.3 195 100.0
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.1e-94 347.1 196 87.2
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 4.2e-91 338.2 186 89.8
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 7.0e-78 294.3 185 78.9
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.0e-76 288.1 174 82.2
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 1.1e-75 287.0 192 75.0
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.4e-72 275.0 173 78.0
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 7.5e-72 274.2 191 72.3
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.7e-71 273.1 173 77.5
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.7e-71 273.1 185 73.5
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 7.8e-69 264.2 186 69.4
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 7.8e-69 264.2 185 71.9
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 8.6e-68 260.8 186 69.4
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 8.0e-66 254.2 183 65.6
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 6.8e-65 251.1 186 66.1
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 1.7e-63 246.5 159 74.8
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.0e-61 239.6 188 66.5
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 5.9e-61 238.0 171 70.8
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.2e-57 224.9 167 65.9
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.2e-57 224.9 145 77.2
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 8.9e-57 224.2 166 66.3
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 4.1e-54 215.3 186 59.1
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.5e-51 206.1 188 56.9
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.5e-51 204.1 149 69.8
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 1.6e-50 203.4 157 61.8
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 1.1e-49 200.7 180 56.1
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.1e-49 199.1 171 57.3
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.0e-48 196.4 164 57.9
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 2.6e-48 196.1 169 57.4
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 3.4e-48 195.7 184 52.2
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 7.5e-48 194.5 177 57.1
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.2e-47 193.0 173 57.8
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 2.9e-47 192.6 168 57.7
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.9e-47 192.6 142 70.4
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 3.7e-47 192.2 171 55.6
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 4.9e-47 191.8 173 57.2
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-46 190.7 136 69.9
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-46 190.3 173 57.8
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 3.2e-46 189.1 170 55.9
Solyc09g061580.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.2e-46 189.1 116 77.6
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 5.4e-46 188.3 168 56.0
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 5.4e-46 188.3 168 56.0
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 5.4e-46 188.3 171 56.7
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 5.4e-46 188.3 170 57.1
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 9.2e-46 187.6 164 57.9
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 9.2e-46 187.6 171 56.7
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.2e-45 187.2 170 57.1
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 1.6e-45 186.8 170 57.1
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 2.1e-45 186.4 186 50.5
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 2.1e-45 186.4 171 56.1
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 2.1e-45 186.4 170 56.5
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 2.1e-45 186.4 169 56.8
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 2.7e-45 186.0 171 55.0
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 3.5e-45 185.7 171 56.7
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 6.0e-45 184.9 170 56.5
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 6.0e-45 184.9 171 56.7
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 6.0e-45 184.9 171 55.0
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 7.8e-45 184.5 171 56.1
Solyc09g061540.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.0e-44 184.1 116 78.4
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.7e-44 183.3 182 54.9
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 1.7e-44 183.3 165 58.8
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 2.3e-44 183.0 171 52.6
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 3.9e-44 182.2 174 52.9
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 5.1e-44 181.8 158 60.1
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 5.1e-44 181.8 158 60.1
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 6.6e-44 181.4 169 53.3
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 6.6e-44 181.4 171 56.1
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 6.6e-44 181.4 169 51.5
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 6.6e-44 181.4 183 51.4
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 1.1e-43 180.6 184 48.4
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 1.1e-43 180.6 160 53.1
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 1.1e-43 180.6 168 54.8
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 1.1e-43 180.6 171 53.2
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 1.5e-43 180.3 180 51.1
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 1.5e-43 180.3 191 50.8
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 1.5e-43 180.3 164 54.3
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 1.9e-43 179.9 160 55.0
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 2.5e-43 179.5 185 49.2
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 2.5e-43 179.5 185 49.2
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 3.3e-43 179.1 174 50.6
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 5.6e-43 178.3 168 52.4
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 9.5e-43 177.6 192 47.9
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 9.5e-43 177.6 171 52.6
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 9.5e-43 177.6 173 51.4
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.2e-42 177.2 119 73.9
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.6e-42 176.8 170 51.2
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 1.6e-42 176.8 155 52.9
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 1.6e-42 176.8 155 56.8
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 2.8e-42 176.0 173 50.9
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 2.8e-42 176.0 163 52.8
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.8e-42 176.0 163 52.8
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 2.8e-42 176.0 166 54.2
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 1.1e-41 174.1 164 53.7
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 5.2e-41 171.8 171 50.3
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 1.2e-40 170.6 159 54.7
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 1.5e-40 170.2 169 50.9
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 2.0e-40 169.9 182 48.4
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 3.4e-40 169.1 179 49.7
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 3.4e-40 169.1 163 52.8
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 3.4e-40 169.1 161 53.4
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 4.4e-40 168.7 161 52.2
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 5.8e-40 168.3 163 52.1
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 9.9e-40 167.5 168 50.0
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 1.7e-39 166.8 161 49.1
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 2.9e-39 166.0 170 50.0
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 3.8e-39 165.6 170 48.8
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 3.8e-39 165.6 179 48.6
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 4.9e-39 165.2 177 49.2
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 6.4e-39 164.9 142 54.9
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 8.4e-39 164.5 170 51.2
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 8.4e-39 164.5 162 51.2
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 1.4e-38 163.7 155 52.9
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 3.2e-38 162.5 164 51.8
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 5.4e-38 161.8 189 47.6
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 1.6e-37 160.2 167 51.5
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 2.1e-37 159.8 162 50.6
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 6.0e-37 158.3 142 54.2
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 6.0e-37 158.3 164 51.2
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 7.8e-37 157.9 170 48.2
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 7.8e-37 157.9 159 47.2
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 7.8e-37 157.9 166 49.4
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 1.3e-36 157.1 170 47.6
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 3.0e-36 156.0 159 50.3
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 3.0e-36 156.0 170 48.2
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 3.9e-36 155.6 157 51.0
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 5.1e-36 155.2 163 47.9
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 5.1e-36 155.2 192 43.2
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 6.6e-36 154.8 153 47.1
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 8.6e-36 154.5 170 46.5
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 8.6e-36 154.5 164 48.2
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 8.6e-36 154.5 159 49.7
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 3.3e-35 152.5 192 43.2
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 4.3e-35 152.1 164 47.0
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 4.3e-35 152.1 131 55.7
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 9.6e-35 151.0 136 52.9
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 9.6e-35 151.0 143 51.7
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 2.1e-34 149.8 136 51.5
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 2.1e-34 149.8 162 43.8
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 2.8e-34 149.4 155 49.7
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 3.6e-34 149.1 164 46.3
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 3.6e-34 149.1 152 48.7
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 8.1e-34 147.9 149 49.0
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 1.4e-33 147.1 171 45.6
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 5.2e-33 145.2 185 42.7
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 9.0e-33 144.4 165 46.7
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 1.2e-32 144.1 162 42.6
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 1.5e-32 143.7 163 46.6
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 4.4e-32 142.1 159 47.2
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 5.8e-32 141.7 131 52.7
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 1.3e-31 140.6 159 46.5
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.2e-30 136.0 99 67.7
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 2.7e-29 132.9 106 60.4
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.0e-28 131.0 111 62.2
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.5e-27 126.3 80 80.0
SEGI_30321 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 4.3e-27 125.6 152 41.4
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.6e-26 123.6 115 49.6
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.6e-26 123.6 115 49.6
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 1.1e-25 120.9 112 54.5
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 1.2e-24 117.5 97 57.7
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 1.2e-24 117.5 159 40.3
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.6e-24 116.3 96 56.2
SEGI_19972 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 6.7e-20 101.7 107 45.8
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.3e-19 99.4 129 42.6
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.6e-19 97.8 73 64.4
Pp3c9_22000 Physcomitrium patens HOM05D003253 ORTHO05D002078 1.3e-18 97.4 176 35.2
Pp3c9_22005 Physcomitrium patens HOM05D003253 ORTHO05D002078 1.3e-18 97.4 176 35.2
Pp3c15_9060 Physcomitrium patens HOM05D003253 ORTHO05D002078 2.8e-18 96.3 166 36.1
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 1.1e-17 94.4 80 57.5
AagrBONN_evm.TU.Sc2ySwM_344.1597 Anthoceros agrestis HOM05D003253 ORTHO05D002078 1.1e-14 84.3 143 35.7
Solyc09g059900.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.4e-14 83.2 55 76.4
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 2.7e-13 79.7 70 55.7
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 6.0e-13 78.6 67 59.7
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.0e-13 78.6 60 70.0
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 3.3e-11 72.8 59 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1010 Anthoceros agrestis HOM05D014402 ORTHO05D016488 9.6e-11 71.2 125 32.8
HPP92_009611 Vanilla planifolia HOM05D003253 ORTHO05D002078 4.8e-10 68.9 107 36.4
Solyc09g060010.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-09 67.8 50 66.0
Mapoly0137s0011 Marchantia polymorpha HOM05D014402 ORTHO05D016488 2.4e-09 66.6 84 39.3
CBR_g48542 Chara braunii HOM05D003253 ORTHO05D002078 4.5e-08 62.4 151 28.5
Sed0005998 Sechium edule HOM05D000222 ORTHO05D003997 5.8e-08 62.0 156 24.4
PGSC0003DMG400011817 Solanum tuberosum HOM05D001626 ORTHO05D001563 7.6e-08 61.6 44 70.5
MBI04_g34431_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D007489 1.4e-06 57.4 128 25.8


User provided reference genes

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