Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g060100.3 Solanum lycopersicum HOM05D007814 ORTHO05D009902 9.7e-206 719.9 367 100.0
Sopen09g023730 Solanum pennellii HOM05D007814 ORTHO05D009902 1.6e-203 712.6 367 98.9
Nitab4.5_0003758g0030 Nicotiana tabacum HOM05D007814 ORTHO05D009902 1.0e-167 593.6 377 83.6
Nitab4.5_0000045g0290 Nicotiana tabacum HOM05D007814 ORTHO05D009902 1.9e-164 582.8 376 82.7
Peaxi162Scf00107g02025 Petunia axillaris HOM05D007814 ORTHO05D009902 3.0e-162 575.5 369 82.7
PGSC0003DMG400017662 Solanum tuberosum HOM05D007814 ORTHO05D009902 1.6e-152 543.1 345 83.5
Oeu022249.1 Olea europaea HOM05D007814 ORTHO05D009902 9.6e-129 464.2 370 66.2
FvH4_2g19010 Fragaria vesca HOM05D007814 ORTHO05D009902 1.2e-123 447.2 317 71.0
MSTRG.18850 Avicennia marina HOM05D007814 ORTHO05D009902 2.1e-123 446.4 323 68.4
ECA236G4680 Erigeron canadensis HOM05D007814 ORTHO05D009902 1.3e-122 443.7 319 72.1
CANSAT01G1281 Cannabis sativa HOM05D007814 ORTHO05D009902 5.1e-122 441.8 343 67.1
SalBow6G5719 Salvia bowleyana HOM05D007814 ORTHO05D009902 2.5e-121 439.5 323 69.0
Thecc.01G225000 Theobroma cacao HOM05D007814 ORTHO05D009902 2.5e-121 439.5 317 70.0
vmacro14751 Vaccinium macrocarpon HOM05D007814 ORTHO05D009902 3.3e-121 439.1 343 64.7
Potri.002G242800 Populus trichocarpa HOM05D007814 ORTHO05D009902 7.4e-121 438.0 317 67.5
Lalb_Chr19g0125641 Lupinus albus HOM05D007814 ORTHO05D009902 1.3e-120 437.2 357 64.1
FAN15G0488 Fragaria x ananassa HOM05D007814 ORTHO05D009902 3.7e-120 435.6 317 69.4
Migut.D02523 Erythranthe guttata HOM05D007814 ORTHO05D009902 4.8e-120 435.3 342 65.5
TAR362G0330 Trochodendron aralioides HOM05D007814 ORTHO05D009902 4.8e-120 435.3 327 67.9
TWI75G1564 Tripterygium wilfordii HOM05D007814 ORTHO05D009902 8.2e-120 434.5 320 67.5
Lsat_1_v5_gn_8_89880 Lactuca sativa HOM05D007814 ORTHO05D009902 2.4e-119 433.0 308 72.7
EL10Ac7g17844 Beta vulgaris HOM05D007814 ORTHO05D009902 6.9e-119 431.4 322 68.9
FAN27G1054 Fragaria x ananassa HOM05D007814 ORTHO05D009902 1.5e-118 430.3 317 69.4
Sc05g0002160 Simmondsia chinensis HOM05D007814 ORTHO05D009902 2.6e-118 429.5 318 68.9
Cpa.g.sc8.150 Carica papaya HOM05D007814 ORTHO05D009902 3.4e-118 429.1 325 66.5
QL09p054446 Quercus lobata HOM05D007814 ORTHO05D009902 4.5e-118 428.7 307 70.0
MD05G1174800 Malus domestica HOM05D007814 ORTHO05D009902 1.7e-117 426.8 318 68.6
PSO063G1792 Papaver somniferum HOM05D007814 ORTHO05D009902 2.2e-117 426.4 357 61.6
Cc01_g16980 Coffea canephora HOM05D007814 ORTHO05D009902 3.8e-117 425.6 313 68.7
AUR62001086 Chenopodium quinoa HOM05D007814 ORTHO05D009902 6.5e-117 424.9 377 62.1
PSO017G6744 Papaver somniferum HOM05D007814 ORTHO05D009902 6.5e-117 424.9 357 61.1
Duzib138G0957 Durio zibethinus HOM05D007814 ORTHO05D009902 1.4e-116 423.7 327 66.7
HanXRQChr04g0108161 Helianthus annuus HOM05D007814 ORTHO05D009902 1.9e-116 423.3 316 69.6
Gohir.D08G057500 Gossypium hirsutum HOM05D007814 ORTHO05D009902 4.2e-116 422.2 347 64.8
Gorai.004G058700 Gossypium raimondii HOM05D007814 ORTHO05D009902 4.2e-116 422.2 353 64.0
Prupe.8G202300 Prunus persica HOM05D007814 ORTHO05D009902 2.1e-115 419.9 320 67.8
COL.COLO4_15688 Corchorus olitorius HOM05D007814 ORTHO05D009902 6.0e-115 418.3 314 67.8
Gohir.A08G047100 Gossypium hirsutum HOM05D007814 ORTHO05D009902 1.8e-114 416.8 352 63.4
Eucgr.H00797 Eucalyptus grandis HOM05D007814 ORTHO05D009902 6.7e-114 414.8 336 63.7
Nn1g07865 Nelumbo nucifera HOM05D007814 ORTHO05D009902 1.1e-113 414.1 324 66.7
THA.LOC104809110 Tarenaya hassleriana HOM05D007814 ORTHO05D009902 2.5e-113 412.9 324 66.0
Ciclev10020793m.g Citrus clementina HOM05D007814 ORTHO05D009902 4.3e-113 412.1 320 67.5
Psat3g145840 Pisum sativum HOM05D007814 ORTHO05D009902 7.4e-113 411.4 317 66.6
AUR62008915 Chenopodium quinoa HOM05D007814 ORTHO05D009902 2.1e-112 409.8 345 64.1
TPR.G9308 Trifolium pratense HOM05D007814 ORTHO05D009902 2.8e-112 409.5 305 68.2
Medtr7g057180 Medicago truncatula HOM05D007814 ORTHO05D009902 6.3e-112 408.3 330 64.8
Lj1g0000473 Lotus japonicus HOM05D007814 ORTHO05D009902 1.1e-111 407.5 321 66.7
Aqoxy2G03872 Aquilegia oxysepala HOM05D007814 ORTHO05D009902 5.9e-110 401.7 325 61.8
Ca_05138_v3 Cicer arietinum L. HOM05D007814 ORTHO05D009902 3.8e-109 399.1 317 64.4
Thhalv10025557m.g Eutrema salsugineum HOM05D007814 ORTHO05D009902 6.1e-107 391.7 328 63.7
Carub.0007s2955 Capsella rubella HOM05D007814 ORTHO05D009902 1.1e-105 387.5 318 62.3
AL9U10890 Arabidopsis lyrata HOM05D007814 ORTHO05D009902 3.7e-104 382.5 328 60.7
BcaC02g09443 Brassica carinata HOM05D007814 ORTHO05D009902 3.7e-104 382.5 329 62.3
ATR1145G089 Amborella trichopoda HOM05D007814 ORTHO05D009902 4.8e-104 382.1 328 60.4
C04p42800 Brassica napus HOM05D007814 ORTHO05D009902 1.1e-103 380.9 329 62.3
BolC4t25846H Brassica oleracea HOM05D007814 ORTHO05D009902 1.1e-103 380.9 329 62.3
CARHR218600 Cardamine hirsuta HOM05D007814 ORTHO05D009902 1.1e-103 380.9 331 59.5
Sp7g10540 Schrenkiella parvula HOM05D007814 ORTHO05D009902 1.8e-103 380.2 323 61.9
A04p08910 Brassica napus HOM05D007814 ORTHO05D009902 4.5e-102 375.6 328 61.9
Aa31LG9G4780 Aethionema arabicum HOM05D007814 ORTHO05D009902 5.9e-102 375.2 356 57.9
BraA04t16587Z Brassica rapa HOM05D007814 ORTHO05D009902 1.7e-101 373.6 329 61.4
HPP92_021384 Vanilla planifolia HOM05D007814 ORTHO05D009902 3.2e-100 369.4 270 68.5
Rhsim01G0255600 Rhododendron simsii HOM05D007814 ORTHO05D009902 3.0e-98 362.8 285 62.8
AUR62001089 Chenopodium quinoa HOM05D007814 ORTHO05D009902 2.4e-95 353.2 370 56.8
Actinidia23722 Actinidia chinensis HOM05D007814 ORTHO05D009902 5.9e-94 348.6 203 83.3
PGR083G1478 Punica granatum HOM05D007814 ORTHO05D009902 2.9e-93 346.3 202 80.7
Haze_24806 Corylus avellana HOM05D007814 ORTHO05D009902 1.6e-91 340.5 229 74.7
FAN24G2056 Fragaria x ananassa HOM05D007814 ORTHO05D009902 9.7e-89 331.3 317 57.1
RcHm_v2.0_Chr6g0284801 Rosa chinensis HOM05D007814 ORTHO05D009902 1.1e-84 317.8 219 72.1
Hund18384 Selenicereus undatus HOM05D007814 ORTHO05D009902 4.2e-84 315.8 298 58.1
GSVIVG01028673001 Vitis vinifera HOM05D007814 ORTHO05D009902 2.0e-81 307.0 262 60.7
A05p28990 Brassica napus HOM05D007814 ORTHO05D009902 2.8e-80 303.1 250 64.0
Manes.13G047600 Manihot esculenta HOM05D007814 ORTHO05D009902 2.3e-74 283.5 246 58.1
Pp3c24_19150 Physcomitrium patens HOM05D007814 ORTHO05D009902 7.2e-68 261.9 278 50.4
AT4G13150 Arabidopsis thaliana HOM05D007814 ORTHO05D009902 1.4e-66 257.7 162 73.5
BraA05t21782Z Brassica rapa HOM05D007814 ORTHO05D009902 5.2e-66 255.8 246 56.9
Mapoly0085s0093 Marchantia polymorpha HOM05D007814 ORTHO05D009902 2.0e-65 253.8 238 54.6
DCAR_012647 Daucus carota HOM05D007814 ORTHO05D009902 3.1e-63 246.5 148 76.4
CDE05G3049 Ceratophyllum demersum HOM05D007814 ORTHO05D009902 1.3e-48 198.0 223 52.9
unitig_26.g9442 Utricularia gibba HOM05D001030 ORTHO05D002278 1.9e-47 194.1 203 52.7
TWI36G0737 Tripterygium wilfordii HOM05D007814 ORTHO05D009902 2.3e-45 187.2 175 53.7
SMO351G0286 Selaginella moellendorffii HOM05D007814 ORTHO05D009902 1.5e-36 157.9 132 57.6
SMO119G0517 Selaginella moellendorffii HOM05D007814 ORTHO05D009902 5.6e-36 156.0 126 58.7
GSVIVG01028671001 Vitis vinifera HOM05D007814 ORTHO05D009902 1.1e-23 115.2 67 82.1
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 9.6e-20 102.1 142 44.4
RcHm_v2.0_Chr6g0284811 Rosa chinensis HOM05D007814 ORTHO05D009902 1.6e-11 74.7 45 80.0
PRCOL_00001446 Prasinoderma coloniale HOM05D007814 ORTHO05D009902 1.2e-09 68.6 200 29.5


User provided reference genes

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