Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.0e-28 126.7 61 100.0
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.3e-17 92.4 60 75.0
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 1.3e-17 92.4 60 75.0
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 4.1e-16 87.4 60 75.0
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.3e-16 87.0 60 71.7
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 9.0e-16 86.3 60 71.7
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 9.0e-16 86.3 60 71.7
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 2.6e-15 84.7 60 70.0
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 2.6e-15 84.7 60 75.0
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.6e-15 84.7 60 71.7
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.5e-15 84.0 57 73.7
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 1.3e-14 82.4 60 70.0
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 1.3e-14 82.4 60 68.3
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.7e-14 82.0 60 68.3
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.7e-14 82.0 60 68.3
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.7e-14 82.0 60 68.3
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.9e-14 81.3 60 68.3
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.8e-14 80.9 60 71.7
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 8.5e-14 79.7 55 72.7
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-13 79.0 60 66.7
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.2e-13 77.4 60 70.0
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 5.5e-13 77.0 60 61.7
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 9.4e-13 76.3 60 66.7
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 9.4e-13 76.3 60 66.7
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 9.4e-13 76.3 60 66.7
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 2.7e-12 74.7 60 65.0
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.6e-12 74.3 59 66.1
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 4.6e-12 73.9 60 58.3
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.6e-12 73.9 60 61.7
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 6.1e-12 73.6 60 63.3
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 7.9e-12 73.2 60 56.7
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.9e-12 73.2 60 60.0
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.0e-11 72.8 60 63.3
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.4e-11 72.4 60 63.3
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 2.3e-11 71.6 60 60.0
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 3.0e-11 71.2 60 61.7
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.9e-11 70.9 58 63.8
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.9e-11 70.9 60 58.3
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 5.1e-11 70.5 60 60.0
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 6.7e-11 70.1 60 58.3
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 8.8e-11 69.7 60 58.3
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.1e-10 69.3 60 60.0
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.1e-10 69.3 60 60.0
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 1.1e-10 69.3 60 58.3
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 1.1e-10 69.3 60 58.3
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 1.1e-10 69.3 60 58.3
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.5e-10 68.9 60 56.7
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 2.6e-10 68.2 60 56.7
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 2.6e-10 68.2 60 56.7
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 2.6e-10 68.2 60 55.0
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.6e-10 68.2 57 61.4
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 3.3e-10 67.8 60 56.7
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 4.4e-10 67.4 60 51.7
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 4.4e-10 67.4 60 53.3
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 4.4e-10 67.4 60 53.3
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 4.4e-10 67.4 60 53.3
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 5.7e-10 67.0 60 56.7
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 7.4e-10 66.6 60 53.3
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 7.4e-10 66.6 57 63.2
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 7.4e-10 66.6 60 58.3
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 9.7e-10 66.2 60 53.3
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 9.7e-10 66.2 60 53.3
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 9.7e-10 66.2 60 51.7
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 9.7e-10 66.2 60 51.7
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 9.7e-10 66.2 60 51.7
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 9.7e-10 66.2 60 51.7
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 9.7e-10 66.2 60 51.7
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 9.7e-10 66.2 60 51.7
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 9.7e-10 66.2 60 51.7
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 1.3e-09 65.9 60 55.0
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.3e-09 65.9 60 55.0
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.3e-09 65.9 60 55.0
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 1.3e-09 65.9 59 52.5
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 1.3e-09 65.9 59 52.5
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 1.3e-09 65.9 60 56.7
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 1.7e-09 65.5 60 53.3
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 2.2e-09 65.1 60 50.0
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 2.2e-09 65.1 60 55.0
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 2.2e-09 65.1 60 50.0
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.8e-09 64.7 60 55.0
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.8e-09 64.7 60 55.0
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.8e-09 64.7 60 53.3
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 2.8e-09 64.7 60 55.0
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 2.8e-09 64.7 60 53.3
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 3.7e-09 64.3 60 51.7
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 4.8e-09 63.9 60 46.7
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 4.8e-09 63.9 60 53.3
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 6.3e-09 63.5 60 50.0
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 6.3e-09 63.5 60 55.0
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 6.3e-09 63.5 60 53.3
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 6.3e-09 63.5 60 51.7
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 8.2e-09 63.2 60 53.3
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.1e-08 62.8 60 50.0
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 1.1e-08 62.8 60 53.3
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 1.4e-08 62.4 60 55.0
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 1.8e-08 62.0 60 51.7
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 1.8e-08 62.0 60 53.3
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 1.8e-08 62.0 60 55.0
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 1.8e-08 62.0 60 50.0
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 3.1e-08 61.2 59 55.9
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 3.1e-08 61.2 60 50.0
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 4.1e-08 60.8 60 45.0
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 4.1e-08 60.8 57 47.4
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 4.1e-08 60.8 60 51.7
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 4.1e-08 60.8 60 51.7
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 4.1e-08 60.8 60 50.0
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 4.1e-08 60.8 60 53.3
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 5.3e-08 60.5 59 50.8
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 6.9e-08 60.1 60 51.7
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 9.1e-08 59.7 60 50.0
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 1.2e-07 59.3 60 51.7
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.5e-07 58.9 60 46.7
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 1.5e-07 58.9 53 60.4
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 1.5e-07 58.9 60 48.3
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 2.0e-07 58.5 60 45.0
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 2.0e-07 58.5 60 48.3
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 2.0e-07 58.5 60 48.3
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 2.0e-07 58.5 60 45.0
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 2.6e-07 58.2 59 50.8
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 2.6e-07 58.2 60 51.7
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 3.4e-07 57.8 60 48.3
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 3.4e-07 57.8 60 48.3
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 3.4e-07 57.8 60 48.3
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 3.4e-07 57.8 60 48.3
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 4.5e-07 57.4 60 46.7
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 4.5e-07 57.4 60 50.0
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 4.5e-07 57.4 60 48.3
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 5.9e-07 57.0 58 50.0
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 5.9e-07 57.0 60 48.3
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 1.0e-06 56.2 60 48.3
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 1.0e-06 56.2 52 50.0
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.0e-06 56.2 36 75.0
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 1.7e-06 55.5 60 50.0
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 2.9e-06 54.7 61 47.5
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 3.8e-06 54.3 61 49.2
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 6.5e-06 53.5 61 47.5
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 6.5e-06 53.5 60 46.7
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 8.5e-06 53.1 61 47.5
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.5e-06 53.1 37 67.6
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 8.5e-06 53.1 60 46.7


User provided reference genes

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