Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.4e-36 154.5 76 100.0
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.2e-26 121.3 75 77.3
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.3e-24 115.9 73 78.1
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 3.0e-24 114.8 73 74.0
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 6.6e-24 113.6 75 73.3
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 6.6e-24 113.6 75 73.3
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.1e-23 112.8 75 72.0
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 2.5e-23 111.7 75 72.0
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.6e-23 110.5 75 70.7
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.2e-22 109.4 74 70.3
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.2e-22 109.4 75 70.7
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.1e-22 108.6 73 72.6
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 3.6e-22 107.8 75 68.0
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 4.7e-22 107.5 75 66.7
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 8.1e-22 106.7 73 68.5
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.8e-21 105.5 75 66.7
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.0e-21 104.4 73 69.9
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.0e-20 102.1 75 69.3
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.0e-20 102.1 75 69.3
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.6e-20 101.7 73 68.5
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 2.6e-20 101.7 75 68.0
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 3.4e-20 101.3 73 67.1
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 7.5e-20 100.1 61 77.0
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 9.9e-20 99.8 75 60.0
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 2.2e-19 98.6 75 60.0
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 3.7e-19 97.8 75 61.3
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 4.9e-19 97.4 75 60.0
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.9e-19 97.4 68 69.1
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 6.4e-19 97.1 75 60.0
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 6.4e-19 97.1 75 60.0
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 6.4e-19 97.1 73 63.0
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 6.4e-19 97.1 73 60.3
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 6.4e-19 97.1 73 60.3
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-18 96.3 73 64.4
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 2.4e-18 95.1 75 57.3
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 3.2e-18 94.7 75 58.7
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 3.2e-18 94.7 75 58.7
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 3.2e-18 94.7 74 56.8
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 7.1e-18 93.6 73 56.2
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 7.1e-18 93.6 75 58.7
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 9.2e-18 93.2 75 56.0
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 9.2e-18 93.2 75 56.0
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 9.2e-18 93.2 75 56.0
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 9.2e-18 93.2 73 57.5
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.2e-17 92.8 73 54.8
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 1.6e-17 92.4 73 57.5
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 1.6e-17 92.4 73 57.5
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 1.6e-17 92.4 73 58.9
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 2.1e-17 92.0 71 59.2
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 3.5e-17 91.3 70 61.4
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 3.5e-17 91.3 70 61.4
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 3.5e-17 91.3 70 61.4
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 3.5e-17 91.3 74 58.1
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 4.6e-17 90.9 74 58.1
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 6.0e-17 90.5 75 57.3
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 6.0e-17 90.5 73 57.5
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 6.0e-17 90.5 73 56.2
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 7.8e-17 90.1 75 53.3
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 1.3e-16 89.4 75 54.7
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.7e-16 89.0 70 60.0
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 2.3e-16 88.6 73 54.8
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 2.3e-16 88.6 73 53.4
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 2.3e-16 88.6 73 54.8
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 2.3e-16 88.6 73 54.8
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 2.3e-16 88.6 73 54.8
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 2.3e-16 88.6 73 54.8
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 2.3e-16 88.6 73 57.5
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 2.3e-16 88.6 75 56.0
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 2.3e-16 88.6 75 56.0
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 2.3e-16 88.6 74 55.4
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 2.3e-16 88.6 75 53.3
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 3.0e-16 88.2 73 54.8
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 3.0e-16 88.2 75 58.7
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 3.0e-16 88.2 73 58.9
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 5.1e-16 87.4 73 56.2
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 5.1e-16 87.4 72 52.8
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 5.1e-16 87.4 75 53.3
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 5.1e-16 87.4 75 54.7
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 5.1e-16 87.4 72 54.2
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 5.1e-16 87.4 73 53.4
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.6e-16 87.0 68 63.2
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 8.6e-16 86.7 73 53.4
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 8.6e-16 86.7 75 53.3
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 1.1e-15 86.3 75 49.3
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 1.1e-15 86.3 73 54.8
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 1.1e-15 86.3 71 57.7
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 1.1e-15 86.3 73 52.1
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 1.5e-15 85.9 73 53.4
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 1.5e-15 85.9 73 52.1
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 1.9e-15 85.5 75 52.0
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 2.5e-15 85.1 75 50.7
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 2.5e-15 85.1 75 52.0
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 2.5e-15 85.1 75 50.7
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 4.3e-15 84.3 71 57.7
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 5.6e-15 84.0 73 50.7
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 5.6e-15 84.0 73 54.8
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 5.6e-15 84.0 72 51.4
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 9.5e-15 83.2 72 54.2
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.1e-14 82.0 73 52.1
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.1e-14 82.0 73 50.7
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 2.1e-14 82.0 75 52.0
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 2.8e-14 81.6 73 47.9
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 2.8e-14 81.6 65 56.9
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 2.8e-14 81.6 72 52.8
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 2.8e-14 81.6 75 49.3
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 3.6e-14 81.3 73 50.7
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 4.7e-14 80.9 73 47.9
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 6.2e-14 80.5 73 49.3
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 8.1e-14 80.1 73 49.3
Solyc09g060010.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.1e-14 80.1 50 78.0
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 1.4e-13 79.3 73 49.3
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 1.4e-13 79.3 72 50.0
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.8e-13 79.0 66 48.5
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 2.4e-13 78.6 74 50.0
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 2.4e-13 78.6 66 50.0
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 3.1e-13 78.2 72 48.6
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 3.1e-13 78.2 71 52.1
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 4.0e-13 77.8 74 51.4
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 6.8e-13 77.0 73 52.1
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 8.9e-13 76.6 73 52.1
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 8.9e-13 76.6 74 50.0
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 1.2e-12 76.3 73 50.7
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 1.2e-12 76.3 74 51.4
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.2e-12 76.3 62 58.1
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.5e-12 75.9 73 45.2
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 1.5e-12 75.9 62 53.2
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 2.6e-12 75.1 74 51.4
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 2.6e-12 75.1 71 46.5
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 2.6e-12 75.1 73 45.2
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 2.6e-12 75.1 74 48.6
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 3.4e-12 74.7 75 49.3
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 4.4e-12 74.3 64 54.7
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 4.4e-12 74.3 73 52.1
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 5.8e-12 73.9 74 47.3
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 5.8e-12 73.9 72 47.2
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 7.6e-12 73.6 74 47.3
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 7.6e-12 73.6 74 50.0
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 7.6e-12 73.6 76 44.7
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 7.6e-12 73.6 75 49.3
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 9.9e-12 73.2 74 50.0
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 9.9e-12 73.2 72 47.2
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.3e-11 72.8 60 60.0
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 1.3e-11 72.8 74 47.3
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 2.2e-11 72.0 74 48.6
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 2.2e-11 72.0 73 46.6
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 2.2e-11 72.0 73 43.8
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 2.2e-11 72.0 75 48.0
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 2.9e-11 71.6 59 50.8
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 2.9e-11 71.6 73 45.2
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 3.8e-11 71.2 75 48.0
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.9e-11 70.9 46 71.7
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 4.9e-11 70.9 75 44.0
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 2.4e-10 68.6 74 45.9
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 3.2e-10 68.2 72 45.8
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 7.1e-10 67.0 76 44.7
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 1.2e-09 66.2 74 43.2
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 1.6e-09 65.9 73 47.9
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 1.6e-09 65.9 75 44.0
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 2.1e-09 65.5 75 42.7
Solyc09g059900.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-07 59.7 39 76.9
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.3e-07 58.2 37 70.3
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 9.6e-07 56.6 45 53.3
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 9.6e-07 56.6 45 53.3
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 2.1e-06 55.5 64 45.3
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 2.8e-06 55.1 54 44.4


User provided reference genes

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