Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g060010.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.3e-81 304.3 152 100.0
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.1e-21 106.3 232 34.5
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.5e-19 100.1 221 35.3
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.9e-16 88.2 119 47.1
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.8e-16 87.8 50 86.0
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.3e-15 86.3 50 82.0
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 1.5e-14 83.6 50 78.0
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.3e-14 81.3 50 78.0
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.8e-13 79.3 222 30.6
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.6e-13 79.0 49 75.5
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.7e-13 78.6 50 74.0
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.7e-13 78.6 50 74.0
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 1.0e-12 77.4 50 72.0
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-12 77.0 49 77.6
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 1.4e-12 77.0 228 29.8
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 1.8e-12 76.6 50 72.0
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 4.0e-12 75.5 50 72.0
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 6.8e-12 74.7 50 66.0
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 6.8e-12 74.7 223 29.6
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 8.9e-12 74.3 223 29.1
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.5e-11 73.6 50 70.0
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.0e-11 73.2 50 68.0
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.4e-11 72.0 43 81.4
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.7e-11 71.6 50 70.0
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 9.8e-11 70.9 50 60.0
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 9.8e-11 70.9 50 60.0
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 1.7e-10 70.1 50 62.0
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 2.2e-10 69.7 50 58.0
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.9e-10 69.3 50 60.0
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 3.7e-10 68.9 50 64.0
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 3.7e-10 68.9 50 60.0
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 3.7e-10 68.9 50 60.0
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 3.7e-10 68.9 50 64.0
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 6.4e-10 68.2 50 62.0
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 6.4e-10 68.2 50 62.0
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 6.4e-10 68.2 49 61.2
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 6.4e-10 68.2 50 62.0
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 6.4e-10 68.2 50 64.0
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.4e-10 68.2 50 66.0
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 6.4e-10 68.2 50 64.0
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 8.3e-10 67.8 50 62.0
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 1.1e-09 67.4 50 60.0
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-09 67.0 47 66.0
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-09 67.0 50 60.0
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 1.8e-09 66.6 50 58.0
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 2.4e-09 66.2 52 61.5
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.4e-09 66.2 50 58.0
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 2.4e-09 66.2 50 56.0
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 2.4e-09 66.2 50 66.0
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 3.2e-09 65.9 50 62.0
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 3.2e-09 65.9 50 62.0
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 3.2e-09 65.9 50 58.0
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 3.2e-09 65.9 50 60.0
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 4.1e-09 65.5 50 64.0
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 4.1e-09 65.5 50 54.0
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 5.4e-09 65.1 50 58.0
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.4e-09 65.1 63 55.6
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.4e-09 65.1 63 55.6
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 9.2e-09 64.3 49 59.2
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 9.2e-09 64.3 49 59.2
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 9.2e-09 64.3 49 59.2
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.2e-08 63.9 50 54.0
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 1.2e-08 63.9 50 56.0
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 1.2e-08 63.9 49 61.2
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 1.6e-08 63.5 50 54.0
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 1.6e-08 63.5 50 54.0
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 1.6e-08 63.5 50 56.0
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 1.6e-08 63.5 50 56.0
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 1.6e-08 63.5 50 56.0
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 1.6e-08 63.5 50 56.0
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 2.0e-08 63.2 50 62.0
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 2.7e-08 62.8 50 58.0
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 2.7e-08 62.8 50 58.0
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 2.7e-08 62.8 50 56.0
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 2.7e-08 62.8 50 56.0
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 2.7e-08 62.8 50 56.0
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.5e-08 62.4 50 60.0
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 3.5e-08 62.4 50 54.0
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 4.6e-08 62.0 49 57.1
Solyc06g054210.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.6e-08 62.0 56 60.7
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 5.9e-08 61.6 50 56.0
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 5.9e-08 61.6 50 56.0
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 5.9e-08 61.6 50 52.0
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 7.8e-08 61.2 50 54.0
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 7.8e-08 61.2 50 54.0
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 1.0e-07 60.8 50 54.0
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 1.0e-07 60.8 50 60.0
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 1.0e-07 60.8 50 56.0
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.3e-07 60.5 65 50.8
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.7e-07 60.1 50 52.0
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 1.7e-07 60.1 50 54.0
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 2.3e-07 59.7 50 54.0
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 2.3e-07 59.7 181 25.4
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 3.0e-07 59.3 50 50.0
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 3.0e-07 59.3 50 52.0
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 3.0e-07 59.3 50 50.0
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 3.9e-07 58.9 50 50.0
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 3.9e-07 58.9 50 54.0
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 3.9e-07 58.9 50 50.0
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 5.0e-07 58.5 50 52.0
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 6.6e-07 58.2 50 50.0
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 6.6e-07 58.2 50 52.0
Solyc06g054170.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.6e-07 58.2 56 57.1
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 8.6e-07 57.8 50 58.0
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 8.6e-07 57.8 49 61.2
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.1e-06 57.4 50 52.0
Solyc06g054190.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-06 57.4 56 57.1
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 1.5e-06 57.0 50 52.0
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 1.9e-06 56.6 50 52.0
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 1.9e-06 56.6 50 50.0
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 1.9e-06 56.6 50 50.0
CAN.G231.1 Capsicum annuum HOM05D003253 ORTHO05D002078 2.5e-06 56.2 56 53.6
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 2.5e-06 56.2 50 48.0
Solyc09g061490.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.3e-06 55.8 60 53.3
Sopen06g019310 Solanum pennellii HOM05D003253 ORTHO05D002078 3.3e-06 55.8 56 55.4
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 4.3e-06 55.5 50 48.0
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 4.3e-06 55.5 51 54.9
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 4.3e-06 55.5 50 50.0
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 5.6e-06 55.1 49 49.0
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 7.3e-06 54.7 50 50.0
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 7.3e-06 54.7 50 50.0
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 7.3e-06 54.7 50 50.0
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 9.5e-06 54.3 49 51.0
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 9.5e-06 54.3 49 49.0
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 9.5e-06 54.3 49 55.1


User provided reference genes

Program Settings