Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.3e-155 551.6 265 100.0
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.4e-81 306.2 247 62.3
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.1e-81 305.4 249 62.2
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 6.8e-68 261.5 177 71.8
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.3e-66 257.3 270 50.7
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 2.2e-66 256.5 276 50.4
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 1.2e-64 250.8 255 51.4
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 1.6e-64 250.4 256 52.0
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 6.0e-64 248.4 251 52.6
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 2.3e-63 246.5 251 51.0
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 3.3e-62 242.7 251 50.2
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.4e-60 236.5 229 54.1
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.9e-58 228.8 175 66.3
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 3.9e-55 219.2 228 50.9
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 1.1e-54 217.6 260 44.6
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.5e-51 207.2 171 60.2
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.8e-51 205.3 239 46.0
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.8e-51 205.3 244 47.5
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 9.9e-51 204.5 244 46.7
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 1.3e-50 204.1 264 43.2
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.4e-49 198.7 157 63.7
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 1.6e-48 197.2 246 45.5
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 3.0e-47 193.0 162 58.0
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.7e-47 191.4 158 61.4
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 1.1e-46 191.0 253 43.1
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 4.3e-46 189.1 273 40.3
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.6e-46 188.7 143 62.2
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 9.6e-46 188.0 273 39.9
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.6e-46 188.0 158 60.8
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.3e-45 187.6 173 57.8
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 2.1e-45 186.8 143 61.5
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 4.8e-45 185.7 266 41.4
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.4e-44 184.1 208 49.5
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 2.4e-44 183.3 265 39.6
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 4.0e-44 182.6 261 41.0
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 5.3e-44 182.2 261 39.8
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.5e-43 180.6 121 71.9
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 5.8e-43 178.7 256 38.3
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.3e-42 177.6 265 39.2
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.3e-42 177.6 265 39.2
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 4.9e-42 175.6 212 42.5
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 6.4e-42 175.3 266 39.1
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 8.4e-42 174.9 262 36.6
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 8.4e-42 174.9 262 36.6
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 8.4e-42 174.9 269 37.2
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.1e-41 174.5 266 39.1
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 4.2e-41 172.6 258 40.3
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 4.2e-41 172.6 238 42.0
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 4.2e-41 172.6 248 41.5
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 4.2e-41 172.6 301 37.5
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 5.4e-41 172.2 247 40.9
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 5.4e-41 172.2 263 40.3
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 7.1e-41 171.8 258 38.4
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 9.3e-41 171.4 254 40.2
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 9.3e-41 171.4 275 37.1
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 1.2e-40 171.0 245 38.4
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 1.6e-40 170.6 255 39.6
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 1.6e-40 170.6 272 37.5
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 2.1e-40 170.2 257 38.9
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 2.7e-40 169.9 266 38.3
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 2.7e-40 169.9 266 38.3
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 3.5e-40 169.5 244 38.9
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 4.6e-40 169.1 253 39.1
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 6.0e-40 168.7 255 38.0
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 6.0e-40 168.7 254 40.2
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 6.0e-40 168.7 255 39.6
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 7.9e-40 168.3 134 58.2
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 7.9e-40 168.3 240 39.6
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 1.0e-39 167.9 246 38.2
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 1.0e-39 167.9 271 36.9
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 1.0e-39 167.9 260 36.9
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 1.0e-39 167.9 277 38.6
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 1.8e-39 167.2 271 36.9
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 1.8e-39 167.2 235 40.0
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 2.3e-39 166.8 260 38.8
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 3.9e-39 166.0 289 37.7
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 3.9e-39 166.0 271 36.5
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 5.1e-39 165.6 255 36.5
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 5.1e-39 165.6 256 38.7
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 6.7e-39 165.2 264 36.0
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 6.7e-39 165.2 280 34.3
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 1.5e-38 164.1 255 36.1
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.9e-38 163.7 240 37.9
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 1.9e-38 163.7 246 38.6
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 1.9e-38 163.7 281 37.7
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.9e-38 163.7 133 62.4
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 2.5e-38 163.3 247 38.1
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 3.3e-38 162.9 276 34.8
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 3.3e-38 162.9 267 35.2
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 4.3e-38 162.5 279 34.1
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 5.6e-38 162.2 251 36.3
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 7.4e-38 161.8 146 52.7
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 9.6e-38 161.4 255 36.9
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 9.6e-38 161.4 255 39.2
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 1.3e-37 161.0 251 36.7
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 1.3e-37 161.0 264 37.1
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 2.1e-37 160.2 247 38.1
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 2.8e-37 159.8 300 36.0
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 3.7e-37 159.5 261 36.4
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 6.2e-37 158.7 256 35.5
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 6.2e-37 158.7 251 35.9
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 8.1e-37 158.3 254 37.4
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 8.1e-37 158.3 269 37.9
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 8.1e-37 158.3 263 37.3
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 8.1e-37 158.3 279 35.8
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 1.1e-36 157.9 277 36.8
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 1.4e-36 157.5 262 35.1
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.8e-36 157.1 226 40.3
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.8e-36 157.1 226 40.3
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 2.4e-36 156.8 151 51.0
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 2.4e-36 156.8 255 36.1
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.4e-36 156.8 254 37.0
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 4.0e-36 156.0 258 35.3
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 4.0e-36 156.0 269 33.8
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 5.3e-36 155.6 253 36.8
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 1.2e-35 154.5 255 34.9
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 1.5e-35 154.1 266 35.7
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 2.0e-35 153.7 251 36.7
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 4.5e-35 152.5 268 34.0
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 7.6e-35 151.8 265 34.0
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 1.0e-34 151.4 146 50.7
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 1.3e-34 151.0 151 49.7
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 1.7e-34 150.6 255 35.7
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 2.2e-34 150.2 251 37.1
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 2.9e-34 149.8 267 33.7
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 2.9e-34 149.8 263 36.9
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 3.8e-34 149.4 248 35.5
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 4.9e-34 149.1 241 36.5
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 6.5e-34 148.7 266 35.0
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 6.5e-34 148.7 266 33.8
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 1.9e-33 147.1 253 36.4
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 3.2e-33 146.4 273 34.4
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.2e-33 146.0 139 56.1
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 5.5e-33 145.6 285 32.3
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 7.1e-33 145.2 141 48.2
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 7.1e-33 145.2 247 35.2
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 1.2e-32 144.4 256 35.2
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 1.6e-32 144.1 251 34.3
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 2.7e-32 143.3 278 35.6
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 1.0e-31 141.4 271 33.2
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 1.0e-31 141.4 262 33.2
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.7e-31 138.3 91 75.8
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 5.7e-30 135.6 267 35.2
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 9.6e-30 134.8 114 52.6
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 9.6e-30 134.8 277 31.8
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 1.3e-29 134.4 207 39.6
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 1.6e-29 134.0 258 30.6
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 8.2e-29 131.7 139 47.5
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 1.4e-28 131.0 250 32.4
Solyc09g061580.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.2e-26 123.6 115 56.5
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 7.1e-25 118.6 83 67.5
Solyc09g061540.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.7e-24 116.7 115 54.8
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.7e-24 116.7 114 53.5
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 1.1e-22 111.3 92 56.5
SEGI_30321 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 4.3e-22 109.4 244 31.1
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.3e-22 109.4 74 70.3
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 5.3e-20 102.4 220 33.2
Pp3c15_9060 Physcomitrium patens HOM05D003253 ORTHO05D002078 5.9e-19 99.0 265 30.9
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 1.3e-18 97.8 138 39.9
Pp3c9_22000 Physcomitrium patens HOM05D003253 ORTHO05D002078 1.7e-18 97.4 266 28.9
Pp3c9_22005 Physcomitrium patens HOM05D003253 ORTHO05D002078 1.7e-18 97.4 266 28.9
SEGI_19972 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 1.7e-18 97.4 218 30.7
Sopen09g023580 Solanum pennellii HOM05D000004 ORTHO05D000002 5.5e-17 92.4 57 78.9
AagrBONN_evm.TU.Sc2ySwM_344.1597 Anthoceros agrestis HOM05D003253 ORTHO05D002078 1.6e-16 90.9 238 31.5
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.6e-16 89.4 121 46.3
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 1.8e-15 87.4 249 28.5
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 3.9e-15 86.3 91 44.0
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 2.5e-14 83.6 68 54.4
HPP92_009611 Vanilla planifolia HOM05D003253 ORTHO05D002078 4.8e-13 79.3 248 28.2
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.8e-12 77.4 67 56.7
Solyc09g061360.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.5e-11 74.3 48 60.4
PGSC0003DMG400040415 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.0e-11 73.9 49 61.2
Solyc06g054210.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.5e-11 72.8 49 59.2
Solyc09g060010.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.0e-10 71.6 43 81.4
Solyc06g054190.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.2e-10 70.5 47 59.6
Sopen06g019310 Solanum pennellii HOM05D003253 ORTHO05D002078 2.2e-10 70.5 47 59.6
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.9e-10 70.1 58 63.8
Solyc06g054170.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.0e-10 69.3 49 55.1
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 1.9e-09 67.4 57 54.4
CAN.G231.1 Capsicum annuum HOM05D003253 ORTHO05D002078 4.2e-09 66.2 49 57.1
CBR_g48542 Chara braunii HOM05D003253 ORTHO05D002078 4.2e-09 66.2 165 29.7
Solyc09g059860.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.1e-08 62.4 58 53.4
Solyc09g061490.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.8e-07 58.5 49 51.0


User provided reference genes

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