Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g059900.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.3e-30 132.9 67 100.0
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.8e-17 92.0 60 76.7
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 7.6e-16 86.7 55 78.2
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.9e-16 86.3 62 71.0
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.9e-15 84.7 56 78.6
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.8e-15 84.3 55 76.4
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.9e-15 84.0 55 78.2
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 6.4e-15 83.6 54 79.6
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-14 82.8 55 76.4
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-14 82.4 61 67.2
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.9e-14 82.0 62 66.1
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 5.5e-14 80.5 54 74.1
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.2e-13 79.3 55 72.7
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 2.1e-13 78.6 55 72.7
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.0e-12 76.3 54 72.2
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 1.8e-12 75.5 54 68.5
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 3.9e-12 74.3 55 69.1
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 6.7e-12 73.6 54 72.2
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.7e-12 73.2 49 75.5
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-11 72.8 61 62.3
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 1.1e-11 72.8 61 62.3
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.3e-11 70.9 61 60.7
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 3.7e-10 67.8 40 82.5
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 6.2e-10 67.0 54 61.1
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 6.2e-10 67.0 54 61.1
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 6.2e-10 67.0 54 61.1
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 2.4e-09 65.1 54 59.3
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 6.9e-09 63.5 49 65.3
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.9e-09 63.5 55 60.0
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 5.8e-08 60.5 54 57.4
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 7.6e-08 60.1 53 56.6
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 1.0e-07 59.7 54 57.4
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 1.0e-07 59.7 54 57.4
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.0e-07 59.7 54 53.7
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.0e-07 59.7 39 76.9
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.3e-07 59.3 54 53.7
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 1.7e-07 58.9 53 52.8
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 2.9e-07 58.2 54 53.7
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.9e-07 58.2 54 50.0
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 2.9e-07 58.2 54 50.0
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 3.8e-07 57.8 54 50.0
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 3.8e-07 57.8 57 52.6
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 3.8e-07 57.8 54 53.7
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 4.9e-07 57.4 54 53.7
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 4.9e-07 57.4 54 55.6
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 4.9e-07 57.4 54 55.6
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 4.9e-07 57.4 54 55.6
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 6.5e-07 57.0 49 59.2
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 6.5e-07 57.0 49 59.2
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 6.5e-07 57.0 57 52.6
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 8.4e-07 56.6 54 50.0
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 8.4e-07 56.6 54 50.0
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 8.4e-07 56.6 54 55.6
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 8.4e-07 56.6 57 52.6
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 1.1e-06 56.2 49 59.2
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 1.4e-06 55.8 57 50.9
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 1.4e-06 55.8 49 55.1
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 1.4e-06 55.8 49 55.1
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 1.4e-06 55.8 54 53.7
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-06 55.8 43 65.1
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 1.9e-06 55.5 49 51.0
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 1.9e-06 55.5 54 53.7
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.9e-06 55.5 39 71.8
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 2.5e-06 55.1 54 48.1
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 2.5e-06 55.1 54 53.7
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 2.5e-06 55.1 57 49.1
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 3.2e-06 54.7 57 49.1
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 3.2e-06 54.7 49 53.1
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 4.2e-06 54.3 57 50.9
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 4.2e-06 54.3 57 50.9
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 4.2e-06 54.3 57 49.1
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 4.2e-06 54.3 57 49.1
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 4.2e-06 54.3 57 49.1
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 4.2e-06 54.3 57 49.1
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 4.2e-06 54.3 57 49.1
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 4.2e-06 54.3 58 46.6
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 4.2e-06 54.3 55 50.9
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 4.2e-06 54.3 46 50.0
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 5.5e-06 53.9 57 50.9
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 5.5e-06 53.9 57 49.1
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 5.5e-06 53.9 54 53.7
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 5.5e-06 53.9 54 53.7
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.5e-06 53.9 36 69.4
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 7.1e-06 53.5 54 50.0
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 7.1e-06 53.5 54 50.0
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 9.3e-06 53.1 49 51.0


User provided reference genes

Program Settings