Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.5e-74 282.0 136 100.0
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.4e-42 174.1 109 76.1
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.6e-41 172.9 109 76.1
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.8e-40 169.5 109 74.3
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.9e-37 159.5 110 69.1
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.2e-37 158.7 109 70.6
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 3.5e-36 155.2 110 67.3
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.5e-36 155.2 109 69.7
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 3.5e-36 155.2 109 69.7
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.8e-35 152.9 115 64.3
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 3.9e-35 151.8 99 73.7
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 6.7e-35 151.0 110 65.5
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-34 150.2 111 65.8
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.5e-34 149.8 110 65.5
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 7.4e-34 147.5 110 65.5
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.6e-34 147.1 110 65.5
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.6e-34 147.1 110 65.5
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 3.7e-33 145.2 111 64.9
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 5.3e-32 141.4 110 59.1
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 4.5e-31 138.3 110 60.9
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 4.5e-31 138.3 105 62.9
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 1.0e-30 137.1 110 60.0
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.0e-30 137.1 91 75.8
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.7e-30 136.3 110 60.0
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 8.4e-30 134.0 111 55.9
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.9e-29 132.9 110 59.1
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 3.2e-29 132.1 110 57.3
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 9.3e-29 130.6 109 56.9
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 1.2e-28 130.2 109 56.9
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 1.6e-28 129.8 109 56.9
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.6e-28 129.8 111 62.2
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.6e-28 129.8 106 61.3
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.7e-28 129.0 110 55.5
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 3.5e-28 128.6 110 56.4
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 3.5e-28 128.6 110 53.6
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 7.9e-28 127.5 111 55.0
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 7.9e-28 127.5 101 57.4
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 1.0e-27 127.1 140 48.6
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 3.9e-27 125.2 110 51.8
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 5.1e-27 124.8 110 52.7
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 5.1e-27 124.8 110 50.0
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 6.7e-27 124.4 109 54.1
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 6.7e-27 124.4 111 54.1
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 6.7e-27 124.4 108 53.7
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 8.7e-27 124.0 110 55.5
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 8.7e-27 124.0 110 55.5
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.1e-26 123.6 110 55.5
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.1e-26 123.6 110 55.5
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 1.1e-26 123.6 110 51.8
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 1.1e-26 123.6 110 51.8
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 1.9e-26 122.9 110 50.9
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 1.9e-26 122.9 110 52.7
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 2.5e-26 122.5 110 50.9
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 5.7e-26 121.3 107 50.5
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 7.4e-26 120.9 110 50.9
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 9.7e-26 120.6 111 53.2
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 9.7e-26 120.6 111 53.2
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 1.3e-25 120.2 111 53.2
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 1.6e-25 119.8 110 48.2
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.6e-25 119.8 109 51.4
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.2e-25 119.4 110 50.9
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.2e-25 119.4 110 50.9
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 2.2e-25 119.4 110 50.9
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 2.2e-25 119.4 110 49.1
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 2.2e-25 119.4 110 50.9
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 2.2e-25 119.4 101 55.4
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 2.8e-25 119.0 110 50.0
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 2.8e-25 119.0 110 50.0
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 2.8e-25 119.0 105 50.5
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 3.7e-25 118.6 110 48.2
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 3.7e-25 118.6 110 48.2
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 3.7e-25 118.6 110 48.2
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.1e-24 117.1 103 51.5
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 1.1e-24 117.1 110 47.3
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 1.1e-24 117.1 111 49.5
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.4e-24 116.7 111 51.4
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 1.8e-24 116.3 110 50.9
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 3.1e-24 115.5 110 52.7
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 4.1e-24 115.2 110 46.4
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 4.1e-24 115.2 110 47.3
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 5.3e-24 114.8 110 45.5
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 5.3e-24 114.8 102 50.0
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 6.9e-24 114.4 110 47.3
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.9e-24 114.4 71 73.2
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 1.2e-23 113.6 110 50.9
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.5e-23 113.2 74 71.6
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.6e-23 112.5 107 57.9
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 3.4e-23 112.1 110 51.8
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 3.4e-23 112.1 111 46.8
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 5.9e-23 111.3 110 45.5
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 1.3e-22 110.2 112 48.2
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 1.7e-22 109.8 113 47.8
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 1.7e-22 109.8 136 43.4
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 2.2e-22 109.4 111 47.7
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 2.9e-22 109.0 110 47.3
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 2.9e-22 109.0 109 47.7
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 3.8e-22 108.6 106 50.0
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 3.8e-22 108.6 110 45.5
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 3.8e-22 108.6 110 49.1
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 5.0e-22 108.2 110 47.3
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 6.5e-22 107.8 109 47.7
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 6.5e-22 107.8 112 45.5
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 1.4e-21 106.7 111 46.8
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 1.4e-21 106.7 113 41.6
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 1.4e-21 106.7 99 49.5
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 1.9e-21 106.3 111 45.9
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 1.9e-21 106.3 110 48.2
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 2.5e-21 105.9 111 44.1
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 3.2e-21 105.5 110 47.3
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 3.2e-21 105.5 102 47.1
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 4.2e-21 105.1 112 45.5
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 7.2e-21 104.4 100 46.0
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 7.2e-21 104.4 110 44.5
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 7.2e-21 104.4 109 45.0
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 9.4e-21 104.0 102 46.1
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 1.2e-20 103.6 99 49.5
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 1.6e-20 103.2 111 42.3
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 1.6e-20 103.2 111 40.5
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 1.6e-20 103.2 110 46.4
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 2.7e-20 102.4 87 52.9
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 2.7e-20 102.4 111 44.1
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 3.6e-20 102.1 110 47.3
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 4.6e-20 101.7 116 44.0
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.6e-20 101.7 73 68.5
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 6.1e-20 101.3 90 53.3
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 6.1e-20 101.3 103 45.6
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 6.1e-20 101.3 110 40.9
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 7.9e-20 100.9 110 43.6
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.4e-19 100.1 94 50.0
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 1.4e-19 100.1 111 45.9
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 2.3e-19 99.4 110 44.5
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 2.3e-19 99.4 109 40.4
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 3.9e-19 98.6 87 50.6
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 5.1e-19 98.2 109 42.2
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 8.8e-19 97.4 94 46.8
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 8.8e-19 97.4 120 36.7
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 1.1e-18 97.1 113 41.6
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 1.5e-18 96.7 111 41.4
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.9e-18 96.3 110 42.7
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 2.5e-18 95.9 111 41.4
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 3.3e-18 95.5 113 40.7
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 4.3e-18 95.1 102 44.1
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 7.4e-18 94.4 110 41.8
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 7.4e-18 94.4 101 40.6
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 1.7e-17 93.2 109 41.3
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 2.8e-17 92.4 111 41.4
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 4.8e-17 91.7 112 39.3
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 6.3e-17 91.3 107 42.1
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 1.8e-16 89.7 97 46.4
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.1e-16 88.6 74 63.5
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.1e-16 88.6 72 62.5
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 5.3e-16 88.2 110 36.4
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 1.5e-15 86.7 101 41.6
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 2.0e-15 86.3 82 48.8
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 2.6e-15 85.9 75 52.0
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 3.4e-15 85.5 83 45.8
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 5.0e-14 81.6 109 38.5
Solyc09g060010.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.1e-12 76.3 49 77.6
Solyc09g059900.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.0e-11 73.9 49 75.5
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.4e-11 73.6 71 43.7
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.4e-11 73.6 71 43.7
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.8e-11 73.2 75 52.0
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 5.1e-11 71.6 68 51.5
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.7e-10 67.4 57 61.4
HPP92_009611 Vanilla planifolia HOM05D003253 ORTHO05D002078 9.7e-10 67.4 110 34.5
SEGI_30321 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 4.8e-09 65.1 110 33.6
Solyc09g061540.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.2e-07 60.5 50 58.0
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 1.5e-07 60.1 70 44.3
Solyc09g061580.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.6e-07 59.3 50 56.0
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 7.7e-07 57.8 69 40.6


User provided reference genes

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