Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g059840.1 Solanum lycopersicum HOM05D000009 ORTHO05D000008 2.1e-100 369.0 182 100.0
CAN.G773.1 Capsicum annuum HOM05D000009 ORTHO05D000008 9.5e-37 157.5 154 55.8
Sopen08g024300 Solanum pennellii HOM05D000009 ORTHO05D000008 3.1e-35 152.5 155 55.5
PGSC0003DMG400029590 Solanum tuberosum HOM05D000009 ORTHO05D000008 5.2e-35 151.8 138 56.5
PGSC0003DMG400008588 Solanum tuberosum HOM05D000009 ORTHO05D000008 6.4e-33 144.8 134 57.5
PGSC0003DMG401030883 Solanum tuberosum HOM05D000009 ORTHO05D000008 9.2e-32 141.0 168 50.0
Sopen02g003470 Solanum pennellii HOM05D000009 ORTHO05D000008 6.4e-25 118.2 110 55.5
CAN.G1269.12 Capsicum annuum HOM05D000009 ORTHO05D000008 4.2e-24 115.5 107 60.7
Solyc02g014230.1 Solanum lycopersicum HOM05D000009 ORTHO05D000008 1.2e-23 114.0 110 53.6
Solyc08g075640.4 Solanum lycopersicum HOM05D000009 ORTHO05D000008 1.3e-20 104.0 139 45.3
PGSC0003DMG400009324 Solanum tuberosum HOM05D000009 ORTHO05D000008 2.8e-20 102.8 154 39.6
Sopen00g003430 Solanum pennellii HOM05D000009 ORTHO05D000008 3.1e-19 99.4 104 56.7
PGSC0003DMG400017072 Solanum tuberosum HOM05D000009 ORTHO05D000008 3.1e-19 99.4 85 61.2
CAN.G1269.9 Capsicum annuum HOM05D000009 ORTHO05D000008 4.0e-19 99.0 90 57.8
PGSC0003DMG400030855 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.5e-18 97.1 97 54.6
Sopen08g024640 Solanum pennellii HOM05D000009 ORTHO05D000008 4.5e-18 95.5 154 39.0
PGSC0003DMG400017065 Solanum tuberosum HOM05D000009 ORTHO05D000008 7.6e-18 94.7 84 63.1
PGSC0003DMG400019900 Solanum tuberosum HOM05D000009 ORTHO05D000008 9.9e-18 94.4 85 57.6
PGSC0003DMG401021043 Solanum tuberosum HOM05D000009 ORTHO05D000008 9.9e-18 94.4 86 60.5
PGSC0003DMG400017060 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.3e-17 94.0 102 52.0
Medtr1g022380 Medicago truncatula HOM05D000009 ORTHO05D000008 3.8e-17 92.4 155 36.1
CAN.G773.3 Capsicum annuum HOM05D000009 ORTHO05D000008 4.9e-17 92.0 83 57.8
PGSC0003DMG400039970 Solanum tuberosum HOM05D000009 ORTHO05D000008 7.1e-16 88.2 97 49.5
PGSC0003DMG400030856 Solanum tuberosum HOM05D000009 ORTHO05D000008 9.3e-16 87.8 85 60.0
Rhsim05G0016700 Rhododendron simsii HOM05D000009 ORTHO05D000008 1.2e-15 87.4 132 38.6
Solyc08g076000.4 Solanum lycopersicum HOM05D000009 ORTHO05D000008 2.7e-15 86.3 154 36.4
PGSC0003DMG400003439 Solanum tuberosum HOM05D000009 ORTHO05D000008 3.5e-15 85.9 84 58.3
Solyc08g075630.3 Solanum lycopersicum HOM05D000009 ORTHO05D000008 1.0e-14 84.3 155 39.4
PGSC0003DMG400019806 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.3e-14 84.0 82 53.7
PGSC0003DMG401007609 Solanum tuberosum HOM05D000009 ORTHO05D000008 3.9e-14 82.4 85 57.6
CAN.G1269.10 Capsicum annuum HOM05D000009 ORTHO05D000008 3.3e-13 79.3 155 35.5
Medtr5g071823 Medicago truncatula HOM05D000009 ORTHO05D000008 4.3e-13 79.0 155 34.8
Medtr5g071850 Medicago truncatula HOM05D000009 ORTHO05D000008 4.3e-13 79.0 155 34.8
TPR.G10881 Trifolium pratense HOM05D000009 ORTHO05D000008 5.6e-13 78.6 156 35.3
Medtr5g071220 Medicago truncatula HOM05D000009 ORTHO05D000008 9.6e-13 77.8 154 37.0
TPR.G24040 Trifolium pratense HOM05D000009 ORTHO05D000008 9.6e-13 77.8 160 36.2
Medtr5g071780 Medicago truncatula HOM05D000009 ORTHO05D000008 1.6e-12 77.0 153 32.7
TPR.G10597 Trifolium pratense HOM05D000009 ORTHO05D000008 1.6e-12 77.0 156 35.3
TPR.G34427 Trifolium pratense HOM05D000009 ORTHO05D012364 6.2e-12 75.1 150 35.3
Ciclev10027705m.g Citrus clementina HOM05D000009 ORTHO05D000008 8.1e-12 74.7 132 37.9
TPR.G5098 Trifolium pratense HOM05D000009 ORTHO05D000008 8.1e-12 74.7 156 34.6
PGSC0003DMG400019807 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.4e-11 73.9 64 60.9
Solyc09g064600.3 Solanum lycopersicum HOM05D000009 ORTHO05D012364 2.4e-11 73.2 71 53.5
TPR.G20861 Trifolium pratense HOM05D000009 ORTHO05D000008 3.1e-11 72.8 156 35.3
CSS0011964 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 5.3e-11 72.0 140 35.0
Medtr3g086070 Medicago truncatula HOM05D000009 ORTHO05D000008 5.3e-11 72.0 135 29.6
PGSC0003DMG402009306 Solanum tuberosum HOM05D000009 ORTHO05D000008 5.3e-11 72.0 85 50.6
TPR.G24032 Trifolium pratense HOM05D000009 ORTHO05D000008 5.3e-11 72.0 153 34.6
Medtr5g072140 Medicago truncatula HOM05D000009 ORTHO05D000008 9.0e-11 71.2 143 37.1
CSS0040834 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 1.5e-10 70.5 133 38.3
TPR.G15797 Trifolium pratense HOM05D000009 ORTHO05D000008 1.5e-10 70.5 169 31.4
TPR.G29203 Trifolium pratense HOM05D000009 ORTHO05D000008 1.5e-10 70.5 148 34.5
PGSC0003DMG400017062 Solanum tuberosum HOM05D000009 ORTHO05D000008 2.0e-10 70.1 87 50.6
Medtr5g040900 Medicago truncatula HOM05D000009 ORTHO05D000008 7.6e-10 68.2 149 36.2
PGSC0003DMG400017137 Solanum tuberosum HOM05D000009 ORTHO05D398420 7.6e-10 68.2 83 48.2
Medtr0133s0020 Medicago truncatula HOM05D000009 ORTHO05D000008 1.3e-09 67.4 122 35.2
Medtr3g023320 Medicago truncatula HOM05D000009 ORTHO05D000008 1.3e-09 67.4 85 38.8
Dinv29053 Davidia involucrata HOM05D061432 ORTHO05D000008 1.7e-09 67.0 74 52.7
TPR.G24039 Trifolium pratense HOM05D000009 ORTHO05D000008 1.7e-09 67.0 155 31.6
Cc08_g04240 Coffea canephora HOM05D000009 ORTHO05D012472 2.2e-09 66.6 88 45.5
Medtr4g055630 Medicago truncatula HOM05D000009 ORTHO05D000008 2.9e-09 66.2 137 37.2
CSS0043086 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 3.8e-09 65.9 112 41.1
Ca_05627_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 3.8e-09 65.9 154 29.2
QL02p065249 Quercus lobata HOM05D000009 ORTHO05D000008 8.4e-09 64.7 134 34.3
Cc00_g27700 Coffea canephora HOM05D000009 ORTHO05D000008 2.4e-08 63.2 153 33.3
Medtr0256s0050 Medicago truncatula HOM05D000009 ORTHO05D000008 2.4e-08 63.2 149 28.9
Peaxi162Scf00146g00131 Petunia axillaris HOM05D000009 ORTHO05D000008 5.5e-08 62.0 136 34.6
PGSC0003DMG402030883 Solanum tuberosum HOM05D000009 ORTHO05D000008 7.1e-08 61.6 66 54.5
Phvul.002G129700 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.2e-07 60.8 103 38.8
arahy.Tifrunner.gnm1.ann1.7H5P9N Arachis hypogaea HOM05D000009 ORTHO05D000008 1.6e-07 60.5 180 27.2
Os02g0150600 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012472 1.6e-07 60.5 106 32.1
RcHm_v2.0_Chr2g0117561 Rosa chinensis HOM05D000009 ORTHO05D000008 1.6e-07 60.5 127 33.9
vmacro23306 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 1.6e-07 60.5 129 32.6
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 2.1e-07 60.1 155 31.0
QL11p012087 Quercus lobata HOM05D000009 ORTHO05D000008 2.1e-07 60.1 68 42.6
Medtr4g126000 Medicago truncatula HOM05D000009 ORTHO05D000008 2.7e-07 59.7 153 30.7
PGR004G2410 Punica granatum HOM05D000009 ORTHO05D000008 2.7e-07 59.7 156 29.5
TPR.G39369 Trifolium pratense HOM05D000009 ORTHO05D024723 2.7e-07 59.7 194 27.3
TPR.G40565 Trifolium pratense HOM05D000009 ORTHO05D000008 2.7e-07 59.7 146 33.6
Medtr1g023600 Medicago truncatula HOM05D000009 ORTHO05D000008 3.5e-07 59.3 157 28.7
Phvul.002G130666 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 3.5e-07 59.3 142 32.4
VMungo1215G3375 Vigna mungo HOM05D000009 ORTHO05D004635 3.5e-07 59.3 76 43.4
Medtr6g046440 Medicago truncatula HOM05D000009 ORTHO05D000008 4.6e-07 58.9 148 30.4
Dinv10782 Davidia involucrata HOM05D000009 ORTHO05D004635 6.0e-07 58.5 136 30.9
TPR.G28373 Trifolium pratense HOM05D000009 ORTHO05D000008 6.0e-07 58.5 156 32.1
VMungo1215G0862 Vigna mungo HOM05D000009 ORTHO05D000008 6.0e-07 58.5 122 31.1
Medtr0511s0020 Medicago truncatula HOM05D000009 ORTHO05D000008 7.9e-07 58.2 104 33.7
Medtr5g037450 Medicago truncatula HOM05D000009 ORTHO05D000008 7.9e-07 58.2 151 31.8
TPR.G39213 Trifolium pratense HOM05D000009 ORTHO05D000008 7.9e-07 58.2 150 30.0
CSS0029174 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 1.0e-06 57.8 144 34.0
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.0e-06 57.8 97 36.1
Psat2g111600 Pisum sativum HOM05D000009 ORTHO05D016330 1.3e-06 57.4 92 33.7
RcHm_v2.0_Chr5g0051501 Rosa chinensis HOM05D000009 ORTHO05D000008 1.3e-06 57.4 109 34.9
PGSC0003DMG400019800 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.3e-06 57.4 61 54.1
TPR.G5112 Trifolium pratense HOM05D000009 ORTHO05D000008 1.3e-06 57.4 147 32.7
arahy.Tifrunner.gnm1.ann1.CAI9RI Arachis hypogaea HOM05D000009 ORTHO05D000008 1.8e-06 57.0 109 33.9
CiPaw.13G135700 Carya illinoinensis HOM05D000009 ORTHO05D000008 1.8e-06 57.0 141 31.9
Hma1.2p1_1755F.1_g300960 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.8e-06 57.0 94 34.0
Manes.10G133653 Manihot esculenta HOM05D000009 ORTHO05D000008 2.3e-06 56.6 164 31.1
Medtr5g040770 Medicago truncatula HOM05D000009 ORTHO05D000008 2.3e-06 56.6 186 28.0
Manes.07G009937 Manihot esculenta HOM05D000009 ORTHO05D010993 3.0e-06 56.2 159 32.7
Thecc.03G205700 Theobroma cacao HOM05D000009 ORTHO05D000008 3.0e-06 56.2 153 29.4
arahy.Tifrunner.gnm1.ann1.3G3XAR Arachis hypogaea HOM05D000009 ORTHO05D000008 3.9e-06 55.8 117 34.2
Peaxi162Scf00146g00132 Petunia axillaris HOM05D000009 ORTHO05D000008 3.9e-06 55.8 136 33.1
QL12p011837 Quercus lobata HOM05D000009 ORTHO05D000008 3.9e-06 55.8 113 31.0
AUR62019032 Chenopodium quinoa HOM05D000009 ORTHO05D000008 5.1e-06 55.5 137 34.3
Cc00_g11560 Coffea canephora HOM05D000009 ORTHO05D000008 6.7e-06 55.1 156 28.8
Medtr6g046900 Medicago truncatula HOM05D000009 ORTHO05D000008 6.7e-06 55.1 97 36.1
Medtr3g086080 Medicago truncatula HOM05D000009 ORTHO05D048949 8.7e-06 54.7 93 34.4
Medtr6g052455 Medicago truncatula HOM05D000009 ORTHO05D000008 8.7e-06 54.7 148 29.7
TPR.G13508 Trifolium pratense HOM05D000009 ORTHO05D000008 8.7e-06 54.7 150 26.7


User provided reference genes

Program Settings