Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 0.0e+00 1266.9 633 100.0
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 0.0e+00 1210.3 611 99.2
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 0.0e+00 1179.9 611 95.9
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 0.0e+00 1092.0 602 90.0
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 5.6e-302 1040.4 634 83.8
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.1e-288 995.3 680 77.2
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 2.9e-242 842.0 599 75.0
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 1.2e-240 836.6 601 69.4
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 2.6e-238 828.9 617 68.2
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 8.8e-231 803.9 609 68.3
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 2.0e-227 792.7 573 69.5
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.3e-226 790.0 608 66.0
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 1.6e-224 783.1 605 66.3
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 1.5e-222 776.5 609 64.4
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 2.6e-222 775.8 577 67.9
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 3.4e-222 775.4 609 65.0
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 7.5e-222 774.2 609 65.2
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 9.8e-222 773.9 578 66.8
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 6.3e-221 771.2 622 65.0
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 2.0e-219 766.1 610 63.6
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 1.1e-217 760.4 601 64.1
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 5.6e-217 758.1 606 64.0
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 7.2e-217 757.7 608 63.8
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 8.9e-215 750.7 613 63.1
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 1.5e-214 750.0 609 65.4
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 1.3e-213 746.9 600 62.3
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 5.4e-212 741.5 602 63.8
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 9.2e-212 740.7 618 61.8
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 1.6e-211 740.0 612 60.3
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 2.0e-211 739.6 612 62.3
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 5.9e-211 738.0 612 60.6
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 1.0e-210 737.3 620 61.0
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 3.9e-210 735.3 611 60.2
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 5.0e-210 734.9 623 60.2
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 3.3e-209 732.3 605 59.5
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 4.3e-209 731.9 610 61.1
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 7.3e-209 731.1 607 61.9
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.6e-208 729.9 603 62.0
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.1e-208 729.6 586 63.5
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 4.7e-208 728.4 607 60.6
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 6.2e-208 728.0 586 63.5
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 1.0e-207 727.2 609 60.8
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 3.1e-207 725.7 607 60.8
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 4.0e-207 725.3 606 61.2
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 6.8e-207 724.5 575 64.2
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 4.4e-206 721.8 608 61.0
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.9e-205 719.2 608 60.9
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 8.3e-205 717.6 609 58.9
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 1.1e-204 717.2 576 63.7
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 4.1e-204 715.3 576 64.1
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 5.4e-204 714.9 612 60.9
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 1.2e-203 713.8 601 60.1
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 1.2e-203 713.8 604 58.9
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 4.6e-203 711.8 601 59.9
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 4.6e-203 711.8 582 63.1
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.3e-202 710.3 609 61.2
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 1.7e-202 709.9 608 61.8
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 1.7e-202 709.9 610 61.3
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 2.3e-202 709.5 528 66.1
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 3.0e-202 709.1 602 59.1
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 5.6e-201 704.9 605 60.5
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-200 703.7 613 58.2
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.6e-200 703.4 613 58.1
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 3.6e-200 702.2 599 60.4
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 6.2e-200 701.4 571 63.2
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 2.6e-198 696.0 581 61.8
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 2.2e-197 693.0 609 60.3
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 6.6e-194 681.4 603 59.2
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 2.5e-193 679.5 601 57.1
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 9.5e-193 677.6 578 59.7
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 4.7e-192 675.2 605 58.2
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 6.2e-192 674.9 601 58.6
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 4.0e-191 672.2 609 57.5
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 5.2e-191 671.8 607 58.8
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 8.9e-191 671.0 600 59.0
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 8.9e-191 671.0 587 59.5
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.5e-190 670.2 602 58.5
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 7.6e-190 667.9 596 57.6
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 7.6e-190 667.9 577 59.3
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 6.4e-189 664.8 587 58.8
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 1.4e-188 663.7 600 57.5
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 2.4e-188 662.9 584 58.6
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.7e-186 656.8 548 63.9
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 2.3e-186 656.4 612 56.4
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 3.9e-186 655.6 583 58.7
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 3.9e-186 655.6 583 58.7
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 3.3e-185 652.5 585 58.8
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 2.8e-184 649.4 598 58.5
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.2e-182 644.0 654 54.1
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.2e-179 634.0 601 57.9
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 4.6e-179 632.1 558 57.7
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.6e-176 623.6 612 57.5
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 1.4e-175 620.5 613 53.5
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.4e-175 620.5 611 54.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 4.0e-175 619.0 598 54.5
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 5.3e-175 618.6 582 55.2
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 2.2e-173 613.2 610 54.8
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 9.3e-172 607.8 614 51.8
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 6.0e-171 605.1 579 54.9
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 1.7e-170 603.6 613 53.0
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 3.9e-170 602.4 540 59.4
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 3.1e-167 592.8 598 53.3
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 3.2e-164 582.8 443 65.0
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 3.5e-163 579.3 559 54.4
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 7.6e-158 561.6 571 54.3
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.7e-157 560.5 602 50.5
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 3.2e-156 556.2 469 59.7
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.4e-151 540.0 594 49.5
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.6e-147 527.3 344 73.5
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 3.0e-146 523.1 444 61.7
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 1.6e-139 500.7 551 50.8
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 1.1e-119 434.9 610 42.5
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 1.6e-115 421.0 610 39.5
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 4.7e-115 419.5 520 45.8
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 1.7e-104 384.4 577 39.3
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 4.9e-104 382.9 560 39.6
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.4e-95 354.0 319 54.9
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 6.4e-88 329.3 342 50.0
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 3.3e-84 317.0 241 62.7
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 1.5e-81 308.1 356 46.9
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 3.8e-72 276.9 229 58.1
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 1.9e-68 264.6 445 34.8
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 2.5e-68 264.2 229 58.1
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 4.6e-62 243.4 301 44.5
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 6.9e-58 229.6 213 55.9
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-53 215.3 187 58.3
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.3e-34 150.2 263 36.9
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 1.7e-32 145.2 204 44.1
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.0e-32 143.7 173 43.4
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 2.5e-23 114.8 74 75.7
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 3.6e-22 110.9 418 25.1
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 7.9e-22 109.8 190 37.4
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 3.3e-20 104.4 328 27.1
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 2.8e-19 101.3 228 35.1
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 6.5e-16 90.1 49 77.6
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 6.1e-14 83.6 90 55.6
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 7.4e-12 76.6 170 31.2
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 5.9e-09 67.0 53 52.8


User provided reference genes

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