Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 0.0e+00 1083.6 545 100.0
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 4.0e-288 994.2 504 99.0
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 9.5e-266 919.8 544 85.1
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.5e-231 804.7 516 81.2
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.5e-226 788.9 572 73.4
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 9.6e-226 786.9 504 76.4
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 1.6e-220 769.6 504 72.4
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.7e-220 768.8 504 74.8
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 3.5e-220 768.5 504 73.0
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 3.0e-219 765.4 504 74.2
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 5.6e-218 761.1 504 74.8
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 5.6e-218 761.1 504 74.4
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 1.3e-217 760.0 511 72.8
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 1.3e-217 760.0 530 72.6
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 4.8e-217 758.1 504 74.2
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 2.4e-216 755.7 504 72.4
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 2.6e-215 752.3 504 72.6
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 3.8e-214 748.4 504 71.4
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 6.5e-214 747.7 504 71.8
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 1.9e-213 746.1 504 73.0
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 5.5e-213 744.6 504 71.0
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 7.1e-213 744.2 504 71.2
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 2.1e-212 742.7 517 73.1
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 6.0e-212 741.1 504 71.0
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 1.3e-211 740.0 504 71.0
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 1.3e-211 740.0 504 70.8
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 1.8e-211 739.6 510 70.4
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 5.1e-211 738.0 504 70.8
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 6.7e-211 737.6 504 70.6
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 2.5e-210 735.7 504 71.4
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 3.3e-210 735.3 504 71.0
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 1.6e-209 733.0 504 71.0
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 2.8e-209 732.3 566 65.4
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 4.8e-209 731.5 504 70.0
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 6.3e-209 731.1 505 70.3
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 1.1e-208 730.3 504 71.0
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 1.5e-207 726.5 505 72.1
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 3.4e-207 725.3 505 70.1
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 5.9e-207 724.5 504 69.4
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 1.0e-206 723.8 504 70.6
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 2.9e-206 722.2 505 69.9
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 3.8e-206 721.8 504 69.4
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 5.0e-206 721.5 504 69.8
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 6.5e-206 721.1 504 71.0
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.1e-205 720.3 504 69.6
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 1.1e-205 720.3 505 72.5
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 1.9e-205 719.5 504 68.8
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 5.5e-205 718.0 509 69.2
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 1.8e-203 713.0 504 69.4
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 3.0e-203 712.2 505 68.1
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 8.7e-203 710.7 505 68.7
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 1.5e-202 709.9 510 68.8
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 1.5e-202 709.9 504 67.7
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 2.5e-202 709.1 505 68.5
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 3.3e-202 708.8 504 68.3
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 7.4e-202 707.6 506 67.8
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 4.8e-201 704.9 503 68.8
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 4.8e-201 704.9 507 70.4
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 1.1e-200 703.7 510 68.4
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 6.9e-200 701.0 506 68.0
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 1.5e-199 699.9 504 66.5
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 2.6e-199 699.1 581 61.1
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 3.8e-198 695.3 504 67.9
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 3.8e-198 695.3 503 67.2
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 5.0e-198 694.9 505 67.3
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 8.5e-198 694.1 507 68.0
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 2.5e-197 692.6 498 68.7
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 4.2e-197 691.8 503 67.0
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 7.2e-197 691.0 503 66.4
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 1.6e-196 689.9 505 65.7
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 2.7e-196 689.1 505 66.9
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 3.6e-196 688.7 504 66.3
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 4.7e-196 688.3 503 66.8
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 6.1e-196 688.0 504 66.1
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 3.0e-195 685.6 506 65.8
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 5.1e-195 684.9 503 66.0
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 1.5e-194 683.3 503 66.4
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 2.0e-194 682.9 503 66.2
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 3.7e-193 678.7 503 65.4
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 1.8e-192 676.4 503 65.2
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 6.9e-192 674.5 503 65.2
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 2.9e-190 669.1 503 64.8
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 2.9e-190 669.1 503 64.8
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 1.1e-189 667.2 504 65.9
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.6e-188 663.3 507 65.9
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 2.1e-188 662.9 453 71.1
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 2.1e-188 662.9 507 66.1
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 8.8e-187 657.5 520 65.0
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 2.6e-183 646.0 507 63.7
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 6.5e-182 641.3 508 62.6
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 9.4e-181 637.5 434 71.4
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 1.2e-180 637.1 507 64.7
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 4.4e-178 628.6 506 64.4
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.4e-171 607.1 506 61.5
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 7.0e-168 594.7 508 60.6
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 6.4e-153 545.0 534 53.7
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 4.3e-141 505.8 464 55.6
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 6.2e-132 475.3 460 54.6
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-123 448.0 497 46.7
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-121 441.0 497 46.7
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.4e-115 421.0 531 44.3
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 7.1e-112 408.7 237 84.0
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.0e-110 404.8 513 45.0
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.1e-109 401.4 299 71.2
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 2.9e-105 386.7 390 55.4
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 9.3e-104 381.7 519 40.8
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 3.5e-103 379.8 237 78.5
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 1.7e-81 307.8 584 33.7
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.1e-77 295.0 456 41.0
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.7e-76 291.2 271 55.7
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 7.0e-75 285.8 244 54.5
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 4.5e-74 283.1 246 54.9
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-52 211.8 389 38.0
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-51 208.8 362 37.0
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 3.5e-50 203.8 273 44.0
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 5.0e-49 199.9 110 90.0
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 4.7e-47 193.4 166 60.2
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 4.7e-47 193.4 166 60.2
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 2.3e-41 174.5 397 33.5
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 3.9e-41 173.7 393 33.1
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-40 172.2 245 43.3
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 2.6e-37 161.0 555 28.6
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.9e-35 154.8 296 36.1
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 2.3e-33 147.9 359 32.0
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 1.4e-30 138.7 164 50.0
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 4.0e-30 137.1 114 63.2
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 4.0e-30 137.1 501 27.3
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 3.7e-28 130.6 76 85.5
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 8.3e-28 129.4 122 59.8
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 8.3e-28 129.4 253 32.4
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 2.1e-26 124.8 342 28.1
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 1.1e-22 112.5 76 67.1
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 4.1e-19 100.5 88 53.4
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 7.8e-18 96.3 60 78.3
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 6.6e-17 93.2 89 51.7
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 2.8e-15 87.8 195 34.4
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 2.4e-14 84.7 51 74.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 3.1e-14 84.3 46 84.8
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.2e-13 82.4 72 59.7
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.3e-12 79.0 49 71.4
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 2.5e-08 64.7 42 66.7
Peaxi162Scf00207g00840 Petunia axillaris HOM05D002927 ORTHO05D003841 2.4e-06 58.2 262 25.2
CBR_g51323 Chara braunii HOM05D002927 ORTHO05D003841 9.0e-06 56.2 285 22.8


User provided reference genes

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