Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 1.0e-235 819.7 423 100.0
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 1.0e-211 740.0 394 97.7
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 1.6e-204 716.1 394 94.9
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 5.6e-173 611.3 379 85.5
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 5.1e-166 588.2 411 78.8
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 4.0e-163 578.6 360 85.6
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 2.1e-151 539.7 385 75.3
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 7.9e-151 537.7 355 80.6
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 2.3e-150 536.2 349 81.9
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 6.7e-150 534.6 400 73.5
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 1.3e-148 530.4 401 73.6
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 1.2e-146 523.9 378 74.3
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 4.5e-146 521.9 330 82.1
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 1.3e-145 520.4 352 77.0
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 1.3e-145 520.4 387 73.4
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 1.9e-144 516.5 400 70.2
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 1.9e-144 516.5 387 72.1
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 3.2e-144 515.8 420 68.3
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 4.2e-144 515.4 347 78.4
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 5.5e-144 515.0 394 70.3
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 9.3e-144 514.2 350 77.4
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 1.2e-143 513.8 379 73.1
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 1.6e-143 513.5 368 73.4
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 2.7e-143 512.7 377 73.5
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 2.7e-143 512.7 404 70.3
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 3.5e-143 512.3 378 73.0
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.3e-142 509.6 408 69.4
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 3.0e-142 509.2 345 77.1
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 3.9e-142 508.8 396 69.7
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 6.7e-142 508.1 390 72.3
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.1e-141 507.3 384 72.4
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 1.9e-141 506.5 377 72.7
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 3.3e-141 505.8 351 75.5
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 3.3e-141 505.8 398 70.4
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 3.3e-141 505.8 417 67.4
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 4.3e-141 505.4 398 69.3
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 5.7e-141 505.0 375 72.3
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 2.2e-140 503.1 351 74.6
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 2.2e-140 503.1 347 74.9
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 2.8e-140 502.7 415 65.8
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 3.7e-140 502.3 405 67.9
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 4.8e-140 501.9 383 71.5
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 4.8e-140 501.9 363 73.6
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 8.2e-140 501.1 347 75.2
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 1.8e-139 500.0 424 64.6
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 1.8e-139 500.0 406 70.0
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 2.4e-139 499.6 385 69.1
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 3.1e-139 499.2 443 64.3
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.2e-138 497.3 351 73.8
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 1.2e-138 497.3 353 73.4
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 1.2e-138 497.3 341 75.7
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 3.4e-138 495.7 349 75.4
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 4.5e-138 495.4 348 76.7
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.3e-137 493.8 350 75.7
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.7e-137 493.4 381 73.2
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.7e-137 493.4 348 76.7
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 2.2e-137 493.0 351 73.2
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 2.2e-137 493.0 351 73.2
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 2.2e-137 493.0 351 73.2
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 2.2e-137 493.0 351 73.2
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 2.9e-137 492.7 424 64.4
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 1.4e-136 490.3 355 74.1
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 3.2e-136 489.2 335 76.1
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 4.2e-136 488.8 348 73.6
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 2.1e-135 486.5 348 75.0
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 6.1e-135 485.0 348 74.7
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.0e-134 484.2 410 66.6
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.9e-134 482.3 348 74.4
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.9e-134 482.3 348 74.4
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 1.9e-133 479.9 393 65.9
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 1.7e-132 476.9 398 67.8
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 2.2e-132 476.5 371 70.4
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 2.8e-132 476.1 342 74.3
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 3.1e-131 472.6 343 74.1
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 4.1e-131 472.2 416 65.1
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 2.6e-130 469.5 414 65.2
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 3.8e-129 465.7 400 66.5
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.5e-128 463.0 308 77.3
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 7.2e-128 461.5 310 77.7
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 9.4e-128 461.1 404 65.8
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.6e-127 460.3 367 70.6
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 6.1e-127 458.4 374 68.2
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 5.1e-126 455.3 388 65.7
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 8.8e-126 454.5 386 64.2
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 4.4e-125 452.2 323 70.9
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 2.8e-124 449.5 363 67.8
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 4.8e-124 448.7 293 77.8
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 8.2e-124 448.0 349 67.3
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 7.7e-122 441.4 379 62.5
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 2.2e-121 439.9 382 66.0
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 3.5e-114 416.0 304 73.7
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 1.3e-113 414.1 301 71.8
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 5.9e-106 388.7 290 68.3
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 7.7e-106 388.3 319 63.6
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 6.1e-103 378.6 379 55.7
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 6.1e-95 352.1 239 75.7
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 3.6e-79 299.7 276 62.0
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 6.8e-78 295.4 334 47.3
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.2e-77 294.7 195 76.4
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 2.0e-77 293.9 313 49.5
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 8.3e-76 288.5 395 47.1
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 2.4e-75 287.0 194 78.4
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 8.6e-73 278.5 318 46.5
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 2.1e-71 273.9 295 58.6
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 2.2e-68 263.8 282 58.2
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 4.9e-68 262.7 236 55.5
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 3.0e-65 253.4 262 55.0
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 4.4e-61 239.6 906 27.7
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 5.8e-61 239.2 157 77.7
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 2.7e-50 203.8 141 73.0
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 8.4e-44 182.2 157 65.0
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.1e-40 171.8 115 80.0
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 4.2e-35 153.3 124 65.3
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 3.3e-32 143.7 325 32.0
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 4.3e-32 143.3 177 49.2
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.3e-23 115.2 82 70.7
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 5.3e-14 83.2 48 85.4
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 6.9e-14 82.8 308 27.6
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 2.0e-13 81.3 46 84.8
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 1.0e-12 79.0 256 27.3
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 5.0e-12 76.6 49 75.5
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 2.5e-11 74.3 76 55.3
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 1.1e-06 58.9 68 50.0


User provided reference genes

Program Settings