Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g055850.3 Solanum lycopersicum HOM05D006498 ORTHO05D006377 1.2e-29 132.5 64 100.0
Sopen09g019810 Solanum pennellii HOM05D006498 ORTHO05D006377 6.8e-22 106.7 53 100.0
Peaxi162Scf00235g00219 Petunia axillaris HOM05D006498 ORTHO05D006377 9.8e-21 102.8 53 96.2
Nitab4.5_0005686g0030 Nicotiana tabacum HOM05D006498 ORTHO05D006377 1.3e-20 102.4 53 96.2
CAN.G844.1 Capsicum annuum HOM05D006498 ORTHO05D006377 2.9e-20 101.3 53 94.3
Nitab4.5_0000038g0230 Nicotiana tabacum HOM05D006498 ORTHO05D006377 2.9e-20 101.3 53 94.3
Lalb_Chr13g0299961 Lupinus albus HOM05D006498 ORTHO05D006377 2.7e-18 94.7 58 79.3
Rhsim13G0054400 Rhododendron simsii HOM05D006498 ORTHO05D006377 1.0e-17 92.8 53 83.0
Ciclev10008415m.g Citrus clementina HOM05D006498 ORTHO05D006377 2.3e-17 91.7 54 83.3
Medtr4g127350 Medicago truncatula HOM05D006498 ORTHO05D006377 2.3e-17 91.7 53 83.0
PGR142G3062 Punica granatum HOM05D006498 ORTHO05D006377 2.3e-17 91.7 53 83.0
PGR142G3622 Punica granatum HOM05D006498 ORTHO05D006377 2.3e-17 91.7 53 83.0
Cc01_g15950 Coffea canephora HOM05D006498 ORTHO05D006377 3.9e-17 90.9 53 83.0
DCAR_004773 Daucus carota HOM05D006498 ORTHO05D006377 3.9e-17 90.9 53 83.0
Ca_21256_v3 Cicer arietinum L. HOM05D006498 ORTHO05D006377 5.0e-17 90.5 53 81.1
vmacro02834 Vaccinium macrocarpon HOM05D006498 ORTHO05D006377 5.0e-17 90.5 53 81.1
GSVIVG01029313001 Vitis vinifera HOM05D006498 ORTHO05D006377 5.0e-17 90.5 53 83.0
Lalb_Chr12g0199631 Lupinus albus HOM05D006498 ORTHO05D006377 8.6e-17 89.7 53 81.1
Psat0s3389g0200 Pisum sativum HOM05D006498 ORTHO05D006377 8.6e-17 89.7 53 79.2
CiPaw.07G197600 Carya illinoinensis HOM05D006498 ORTHO05D006377 1.1e-16 89.4 53 81.1
arahy.Tifrunner.gnm1.ann1.YNM2K2 Arachis hypogaea HOM05D006498 ORTHO05D006377 1.5e-16 89.0 53 81.1
AUR62025173 Chenopodium quinoa HOM05D006498 ORTHO05D006377 1.5e-16 89.0 53 83.0
Manes.14G159400 Manihot esculenta HOM05D006498 ORTHO05D006377 1.5e-16 89.0 53 81.1
Sc18g0007220 Simmondsia chinensis HOM05D006498 ORTHO05D006377 1.5e-16 89.0 53 81.1
CANSAT11G0487 Cannabis sativa HOM05D006498 ORTHO05D006377 2.5e-16 88.2 53 79.2
Lj2A1114T36 Lonicera japonica HOM05D006498 ORTHO05D006377 2.5e-16 88.2 53 79.2
unitig_60.g25575 Utricularia gibba HOM05D006498 ORTHO05D006377 2.5e-16 88.2 53 79.2
Cfa013457 Carpinus fangiana HOM05D006498 ORTHO05D006377 3.3e-16 87.8 52 82.7
Haze_22031 Corylus avellana HOM05D006498 ORTHO05D006377 3.3e-16 87.8 52 82.7
MELO3C017425.2 Cucumis melo HOM05D006498 ORTHO05D006377 3.3e-16 87.8 53 77.4
CsaV3_1G031910 Cucumis sativus L. HOM05D006498 ORTHO05D006377 3.3e-16 87.8 53 77.4
Eucgr.C00107 Eucalyptus grandis HOM05D006498 ORTHO05D006377 3.3e-16 87.8 53 79.2
SGA_v2.0_scaffold95G28702 Striga asiatica HOM05D006498 ORTHO05D006377 3.3e-16 87.8 53 79.2
VMungo1215G1417 Vigna mungo HOM05D006498 ORTHO05D006377 4.3e-16 87.4 53 79.2
CSS0012471 Camellia sinensis var. sinensis HOM05D006498 ORTHO05D006377 5.6e-16 87.0 53 77.4
ClCG06G013640 Citrullus lanatus HOM05D006498 ORTHO05D006377 5.6e-16 87.0 51 80.4
Dinv28799 Davidia involucrata HOM05D006498 ORTHO05D006377 5.6e-16 87.0 53 77.4
Gohir.A13G208200 Gossypium hirsutum HOM05D006498 ORTHO05D006377 5.6e-16 87.0 53 77.4
Gohir.D13G212600 Gossypium hirsutum HOM05D006498 ORTHO05D006377 5.6e-16 87.0 53 77.4
Gorai.013G243000 Gossypium raimondii HOM05D006498 ORTHO05D006377 5.6e-16 87.0 53 77.4
Prupe.1G074500 Prunus persica HOM05D006498 ORTHO05D006377 5.6e-16 87.0 53 77.4
SHI03076 Sapria himalayana HOM05D006498 ORTHO05D006377 5.6e-16 87.0 52 78.8
FvH4_4g07150 Fragaria vesca HOM05D006498 ORTHO05D006377 7.3e-16 86.7 53 77.4
FAN12G3360 Fragaria x ananassa HOM05D006498 ORTHO05D006377 7.3e-16 86.7 53 77.4
FAN17G1293 Fragaria x ananassa HOM05D006498 ORTHO05D006377 7.3e-16 86.7 53 77.4
FAN22G0654 Fragaria x ananassa HOM05D006498 ORTHO05D006377 7.3e-16 86.7 53 77.4
Hma1.2p1_0491F.1_g164630 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 7.3e-16 86.7 53 77.4
RcHm_v2.0_Chr4g0399301 Rosa chinensis HOM05D006498 ORTHO05D006377 7.3e-16 86.7 53 77.4
SalBow3G4321 Salvia bowleyana HOM05D006498 ORTHO05D006377 7.3e-16 86.7 53 77.4
EL10Ac8g19141 Beta vulgaris HOM05D006498 ORTHO05D006377 9.5e-16 86.3 53 77.4
Glyma.17G058700 Glycine max HOM05D006498 ORTHO05D006377 9.5e-16 86.3 53 77.4
Hma1.2p1_0491F.1_g164640 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 9.5e-16 86.3 52 76.9
Potri.006G075000 Populus trichocarpa HOM05D006498 ORTHO05D006377 9.5e-16 86.3 53 79.2
QL02p046697 Quercus lobata HOM05D006498 ORTHO05D006377 9.5e-16 86.3 52 76.9
Thecc.09G186800 Theobroma cacao HOM05D006498 ORTHO05D006377 1.2e-15 85.9 53 75.5
MSTRG.17962 Avicennia marina HOM05D006498 ORTHO05D006377 1.6e-15 85.5 53 79.2
Nn4g25125 Nelumbo nucifera HOM05D006498 ORTHO05D006377 1.6e-15 85.5 53 75.5
THA.LOC104820009 Tarenaya hassleriana HOM05D006498 ORTHO05D006377 1.6e-15 85.5 53 75.5
Lj4g0022386 Lotus japonicus HOM05D006498 ORTHO05D006377 2.1e-15 85.1 55 78.2
Phvul.003G140900 Phaseolus vulgaris HOM05D006498 ORTHO05D006377 2.1e-15 85.1 53 75.5
TWI32G0168 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 2.1e-15 85.1 53 75.5
Aqoxy7G02850 Aquilegia oxysepala HOM05D006498 ORTHO05D006377 2.8e-15 84.7 53 75.5
Glyma.13G101000 Glycine max HOM05D006498 ORTHO05D006377 2.8e-15 84.7 53 75.5
Sabra06G0055700 Salix brachista HOM05D006498 ORTHO05D006377 2.8e-15 84.7 53 77.4
arahy.Tifrunner.gnm1.ann1.XIUU7W Arachis hypogaea HOM05D006498 ORTHO05D006377 3.6e-15 84.3 51 80.4
Duzib150G1211 Durio zibethinus HOM05D006498 ORTHO05D006377 3.6e-15 84.3 53 73.6
PSO170G2385 Papaver somniferum HOM05D006498 ORTHO05D006377 3.6e-15 84.3 52 80.8
MBI16_g05840_MAGBIO Magnolia biondii HOM05D006498 ORTHO05D006377 4.7e-15 84.0 50 80.0
Atru.chr7.955 Acer truncatum HOM05D006498 ORTHO05D006377 8.0e-15 83.2 52 76.9
Zm00001eb206900 Zea mays HOM05D006498 ORTHO05D006377 8.0e-15 83.2 51 78.4
COL.COLO4_06397 Corchorus olitorius HOM05D006498 ORTHO05D006377 1.0e-14 82.8 53 73.6
MD13G1239600 Malus domestica HOM05D006498 ORTHO05D006377 1.0e-14 82.8 53 73.6
TWI34G1139 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 1.0e-14 82.8 53 73.6
PSO063G6554 Papaver somniferum HOM05D006498 ORTHO05D006377 1.4e-14 82.4 52 78.8
ATR0626G368 Amborella trichopoda HOM05D006498 ORTHO05D006377 1.8e-14 82.0 51 78.4
Os02g0175900 Oryza sativa ssp. japonica HOM05D006498 ORTHO05D006377 1.8e-14 82.0 51 76.5
Sed0023189 Sechium edule HOM05D006498 ORTHO05D006377 2.3e-14 81.6 54 75.9
Actinidia23350 Actinidia chinensis HOM05D006498 ORTHO05D006377 3.1e-14 81.3 51 80.4
Migut.N00676 Erythranthe guttata HOM05D006498 ORTHO05D006377 3.1e-14 81.3 53 73.6
Oeu003665.1 Olea europaea HOM05D006498 ORTHO05D006377 3.1e-14 81.3 53 71.7
Lsat_1_v5_gn_9_16541 Lactuca sativa HOM05D006498 ORTHO05D006377 6.8e-14 80.1 51 74.5
CDE05G1079 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 8.9e-14 79.7 51 76.5
CDE05G1404 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 8.9e-14 79.7 51 76.5
HanXRQChr07g0190541 Helianthus annuus HOM05D006498 ORTHO05D006377 1.2e-13 79.3 51 74.5
Aa31LG8G16310 Aethionema arabicum HOM05D006498 ORTHO05D006377 1.5e-13 79.0 51 74.5
Zm00001eb233520 Zea mays HOM05D006498 ORTHO05D006377 2.0e-13 78.6 49 77.6
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 5.8e-13 77.0 51 72.5
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05D006498 ORTHO05D006377 9.8e-13 76.3 51 68.6
ECA247G1929 Erigeron canadensis HOM05D000109 ORTHO05D006377 9.8e-13 76.3 50 72.0
BcaB03g16716 Brassica carinata HOM05D006498 ORTHO05D006377 2.2e-12 75.1 51 72.5
BcaC06g36544 Brassica carinata HOM05D006498 ORTHO05D006377 2.2e-12 75.1 51 72.5
A07p01520 Brassica napus HOM05D006498 ORTHO05D006377 2.2e-12 75.1 51 72.5
C07p03100 Brassica napus HOM05D006498 ORTHO05D006377 2.2e-12 75.1 51 72.5
BolC7t40702H Brassica oleracea HOM05D006498 ORTHO05D006377 2.2e-12 75.1 51 72.5
BraA07t27953Z Brassica rapa HOM05D006498 ORTHO05D006377 2.2e-12 75.1 51 72.5
CBR_g12030 Chara braunii HOM05D006498 ORTHO05D006377 2.2e-12 75.1 62 66.1
Mapoly0001s0081 Marchantia polymorpha HOM05D006498 ORTHO05D006377 2.2e-12 75.1 54 70.4
Lsat_1_v5_gn_3_41001 Lactuca sativa HOM05D006498 ORTHO05D006377 2.9e-12 74.7 51 70.6
AL3G49020 Arabidopsis lyrata HOM05D006498 ORTHO05D006377 4.9e-12 73.9 51 70.6
AT2G19270 Arabidopsis thaliana HOM05D006498 ORTHO05D006377 4.9e-12 73.9 51 70.6
Carub.0003s3350 Capsella rubella HOM05D006498 ORTHO05D006377 4.9e-12 73.9 51 70.6
CARHR109730 Cardamine hirsuta HOM05D006498 ORTHO05D006377 4.9e-12 73.9 51 70.6
Thhalv10022749m.g Eutrema salsugineum HOM05D006498 ORTHO05D006377 4.9e-12 73.9 51 70.6
Sp3g32630 Schrenkiella parvula HOM05D006498 ORTHO05D006377 4.9e-12 73.9 51 70.6
Lsat_1_v5_gn_7_52821 Lactuca sativa HOM05D006498 ORTHO05D006377 1.4e-11 72.4 51 66.7
SMO361G0453 Selaginella moellendorffii HOM05D006498 ORTHO05D006377 3.2e-11 71.2 48 68.8
Pp3c15_6280 Physcomitrium patens HOM05D006498 ORTHO05D006377 4.1e-11 70.9 51 70.6
HPP92_011644 Vanilla planifolia HOM05D006498 ORTHO05D006377 9.2e-11 69.7 45 73.3
Lsat_1_v5_gn_9_15580 Lactuca sativa HOM05D006498 ORTHO05D006377 1.6e-10 68.9 48 68.8
Lsat_1_v5_gn_5_22180 Lactuca sativa HOM05D006498 ORTHO05D006377 3.5e-10 67.8 47 68.1
Sed0023288 Sechium edule HOM05D006498 ORTHO05D006377 4.7e-07 57.4 42 66.7


User provided reference genes

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