Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1045.7 Capsicum annuum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
CAN.G1148.5 Capsicum annuum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
CAN.G1191.10 Capsicum annuum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
CAN.G1875.3 Capsicum annuum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
CAN.G21.56 Capsicum annuum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
CAN.G267.19 Capsicum annuum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
CAN.G343.3 Capsicum annuum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
CAN.G547.17 Capsicum annuum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
Solyc00g500146.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
Solyc09g055840.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.2e-23 110.9 57 100.0
Migut.D01404 Erythranthe guttata HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Gohir.A09G046338 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr00c0451g0574811 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr00c0533g0575531 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr00c0788g0577381 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr05g0150471 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr13g0416581 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr17g0567651 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Lsat_1_v5_gn_3_92301 Lactuca sativa HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Lsat_1_v5_gn_9_18660 Lactuca sativa HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Nn029s41589 Nelumbo nucifera HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Nn206s45070 Nelumbo nucifera HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Nn219s45285 Nelumbo nucifera HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Nn233s45562 Nelumbo nucifera HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
Nn269s46006 Nelumbo nucifera HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 7.1e-23 109.8 57 98.2
CAN.G1021.15 Capsicum annuum HOM05D000729 ORTHO05D001063 9.3e-23 109.4 57 98.2
Migut.D01322 Erythranthe guttata HOM05D000729 ORTHO05D001063 9.3e-23 109.4 56 98.2
Gohir.A05G323796 Gossypium hirsutum HOM05D000729 ORTHO05D001063 9.3e-23 109.4 56 98.2
HanXRQChr00c0572g0575991 Helianthus annuus HOM05D000729 ORTHO05D001063 9.3e-23 109.4 56 98.2
HanXRQChr13g0418941 Helianthus annuus HOM05D000729 ORTHO05D001063 9.3e-23 109.4 56 98.2
Solyc12g027820.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.6e-22 108.6 57 98.2
Lalb_Chr07g0191911 Lupinus albus HOM05D000729 ORTHO05D001063 2.7e-22 107.8 57 96.5
RcHm_v2.0_Chr5g0051111 Rosa chinensis HOM05D000729 ORTHO05D001063 2.7e-22 107.8 57 96.5
RcHm_v2.0_CPg0501771 Rosa chinensis HOM05D000729 ORTHO05D001063 2.7e-22 107.8 57 96.5
RcHm_v2.0_CPg0502641 Rosa chinensis HOM05D000729 ORTHO05D001063 2.7e-22 107.8 57 96.5
Sed0001647 Sechium edule HOM05D000729 ORTHO05D001063 2.7e-22 107.8 57 96.5
CSS0038723 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 3.5e-22 107.5 57 96.5
Gorai.003G150500 Gossypium raimondii HOM05D000729 ORTHO05D001063 3.5e-22 107.5 57 96.5
Lalb_Chr05g0227471 Lupinus albus HOM05D000729 ORTHO05D001063 3.5e-22 107.5 57 94.7
Nitab4.5_0027450g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.5e-22 107.5 57 96.5
QL93p0823_0001 Quercus lobata HOM05D000729 ORTHO05D001063 4.6e-22 107.1 56 94.6
AL1G51260 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 7.9e-22 106.3 56 96.4
AL7G44080 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 7.9e-22 106.3 56 96.4
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 94.7
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 94.7
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 94.7
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 94.7
Glyma.05G094500 Glycine max HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 94.7
Gohir.D01G101839 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 94.7
HanXRQChr03g0064311 Helianthus annuus HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 96.5
Lj2P1239T117 Lonicera japonica HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 94.7
Lalb_Chr12g0206641 Lupinus albus HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 94.7
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 91.2
Nitab4.5_0001761g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.0e-21 105.9 57 96.5
Lj2P1238T95 Lonicera japonica HOM05D000729 ORTHO05D001063 1.3e-21 105.5 56 94.6
AL2G21870 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.8e-21 105.1 56 94.6
ATCG00890 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 1.8e-21 105.1 56 94.6
ATCG01250 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 1.8e-21 105.1 56 94.6
arahy.Tifrunner.gnm1.ann1.8IFR8Y Arachis hypogaea HOM05D000729 ORTHO05D001063 1.8e-21 105.1 57 94.7
arahy.Tifrunner.gnm1.ann1.A85ADF Arachis hypogaea HOM05D000729 ORTHO05D001063 1.8e-21 105.1 57 94.7
arahy.Tifrunner.gnm1.ann1.FU0XIN Arachis hypogaea HOM05D000729 ORTHO05D001063 1.8e-21 105.1 57 94.7
arahy.Tifrunner.gnm1.ann1.NGJ0AN Arachis hypogaea HOM05D000729 ORTHO05D001063 1.8e-21 105.1 57 94.7
arahy.Tifrunner.gnm1.ann1.NIYG2M Arachis hypogaea HOM05D000729 ORTHO05D001063 1.8e-21 105.1 57 94.7
arahy.Tifrunner.gnm1.ann1.S6TNUT Arachis hypogaea HOM05D000729 ORTHO05D001063 1.8e-21 105.1 57 94.7
CARHR282330 Cardamine hirsuta HOM05D000729 ORTHO05D001063 1.8e-21 105.1 56 94.6
CARHR282530 Cardamine hirsuta HOM05D000729 ORTHO05D001063 1.8e-21 105.1 56 94.6
Gohir.A02G077402 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.8e-21 105.1 57 94.7
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.8e-21 105.1 57 94.7
RcHm_v2.0_Chr2g0118411 Rosa chinensis HOM05D000729 ORTHO05D001063 1.8e-21 105.1 57 93.0
LjContig00489g0003974 Lotus japonicus HOM05D000729 ORTHO05D001063 2.3e-21 104.8 59 94.9
Medtr0002s0310 Medicago truncatula HOM05D000729 ORTHO05D001063 2.3e-21 104.8 57 93.0
Phvul.003G089803 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 2.3e-21 104.8 57 93.0
Phvul.009G090284 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 2.3e-21 104.8 57 93.0
Gohir.D06G107201 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.0e-21 104.4 57 94.7
Oeu012825.1 Olea europaea HOM05D000729 ORTHO05D001063 3.0e-21 104.4 57 94.7
BolSC29t60494H Brassica oleracea HOM05D000729 ORTHO05D001063 3.9e-21 104.0 56 94.6
BolSC29t60537H Brassica oleracea HOM05D000729 ORTHO05D001063 3.9e-21 104.0 56 94.6
BolSC45t60922H Brassica oleracea HOM05D000729 ORTHO05D001063 3.9e-21 104.0 56 94.6
BolSC47t61055H Brassica oleracea HOM05D000729 ORTHO05D001063 3.9e-21 104.0 56 94.6
BraSC103t45436Z Brassica rapa HOM05D000729 ORTHO05D001063 3.9e-21 104.0 56 94.6
BraSC25t45897Z Brassica rapa HOM05D000729 ORTHO05D001063 3.9e-21 104.0 56 94.6
BraSC59t46538Z Brassica rapa HOM05D000729 ORTHO05D001063 3.9e-21 104.0 56 94.6
BraSC59t46561Z Brassica rapa HOM05D000729 ORTHO05D001063 3.9e-21 104.0 56 94.6
Nitab4.5_0004929g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.9e-21 104.0 57 96.5
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 5.1e-21 103.6 57 93.0
Nitab4.5_0018575g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 5.1e-21 103.6 57 93.0
FAN24G1010 Fragaria x ananassa HOM05D000729 ORTHO05D001063 6.7e-21 103.2 57 93.0
Glyma.01G201500 Glycine max HOM05D000729 ORTHO05D001063 6.7e-21 103.2 57 93.0
AL9U12020 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.1e-20 102.4 56 94.6
arahy.Tifrunner.gnm1.ann1.R4S00L Arachis hypogaea HOM05D000729 ORTHO05D001063 1.5e-20 102.1 57 91.2
EL10As12g24040 Beta vulgaris HOM05D000729 ORTHO05D001063 1.5e-20 102.1 55 92.7
Gorai.010G067500 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.5e-20 102.1 57 93.0
SabraPtG0004800 Salix brachista HOM05D000729 ORTHO05D001063 1.9e-20 101.7 57 91.2
Cpa.g.sc2.66 Carica papaya HOM05D000729 ORTHO05D001063 3.3e-20 100.9 57 87.7
Lsat_1_v5_gn_4_11820 Lactuca sativa HOM05D000729 ORTHO05D001063 5.7e-20 100.1 56 89.3
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 5.7e-20 100.1 57 89.5
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 9.7e-20 99.4 57 93.0
CAN.G262.3 Capsicum annuum HOM05D000729 ORTHO05D001063 9.7e-20 99.4 56 94.6
Lj4g0028091 Lotus japonicus HOM05D000729 ORTHO05D001063 1.3e-19 99.0 57 89.5
Gohir.A08G249972 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.8e-19 97.8 57 93.0
Gorai.003G065500 Gossypium raimondii HOM05D000729 ORTHO05D001063 2.8e-19 97.8 57 89.5
Gohir.D11G234166 Gossypium hirsutum HOM05D000729 ORTHO05D001063 4.8e-19 97.1 57 89.5
Solyc11g021090.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 4.8e-19 97.1 53 96.2
Lalb_Chr25g0281841 Lupinus albus HOM05D000729 ORTHO05D001063 2.4e-18 94.7 57 82.5
arahy.Tifrunner.gnm1.ann1.0BYT70 Arachis hypogaea HOM05D000729 ORTHO05D001063 6.9e-18 93.2 57 87.7
EL10Ac8g19099 Beta vulgaris HOM05D000729 ORTHO05D001063 6.9e-18 93.2 52 88.5
EL10As15g24115 Beta vulgaris HOM05D000729 ORTHO05D001063 6.9e-18 93.2 53 88.7
Gorai.005G160600 Gossypium raimondii HOM05D000729 ORTHO05D001063 6.9e-18 93.2 57 86.0
Gohir.D02G143001 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.2e-17 92.4 57 84.2
EL10As15g24106 Beta vulgaris HOM05D000729 ORTHO05D001063 2.6e-17 91.3 57 82.5
CSS0015256 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 7.6e-17 89.7 51 88.2
Solyc04g039790.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.8e-16 87.4 57 84.2
Solyc01g017260.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.9e-15 85.1 57 82.5
Gorai.007G300800 Gossypium raimondii HOM05D000729 ORTHO05D001063 4.2e-15 84.0 57 82.5
Migut.D01376 Erythranthe guttata HOM05D000729 ORTHO05D001063 9.3e-15 82.8 49 83.7
Gohir.D11G278650 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.2e-14 82.4 57 80.7
Nn241s45687 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.7e-14 81.3 40 100.0
Solyc09g050069.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.7e-14 81.3 52 86.5
CSS0022865 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 4.6e-14 80.5 45 86.7
Nitab4.5_0000241g0080 Nicotiana tabacum HOM05D000729 ORTHO05D001063 6.1e-14 80.1 55 81.8
Nitab4.5_0012260g0090 Nicotiana tabacum HOM05D000729 ORTHO05D001063 6.1e-14 80.1 55 81.8
HanXRQChr00c0585g0576201 Helianthus annuus HOM05D000729 ORTHO05D001063 2.3e-13 78.2 39 100.0
Lalb_Chr04g0260201 Lupinus albus HOM05D000729 ORTHO05D001063 3.0e-13 77.8 56 69.6
arahy.Tifrunner.gnm1.ann1.HJG1UD Arachis hypogaea HOM05D000729 ORTHO05D001063 2.5e-12 74.7 51 80.4
arahy.Tifrunner.gnm1.ann1.IXN31S Arachis hypogaea HOM05D000729 ORTHO05D001063 8.2e-11 69.7 47 78.7
Nitab4.5_0005246g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.8e-10 68.6 55 70.9
TPR.G39041 Trifolium pratense HOM05D000729 ORTHO05D001063 3.1e-10 67.8 44 79.5
Lsat_1_v5_gn_5_163541 Lactuca sativa HOM05D000729 ORTHO05D001063 6.9e-10 66.6 47 76.6
Hund08789 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.0e-09 65.1 48 75.0
Nitab4.5_0003706g0020 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.6e-09 64.7 31 100.0
Nitab4.5_0000149g0250 Nicotiana tabacum HOM05D000729 ORTHO05D013759 3.4e-09 64.3 42 78.6
arahy.Tifrunner.gnm1.ann1.XJN4MJ Arachis hypogaea HOM05D000729 ORTHO05D001063 2.2e-08 61.6 33 97.0
Solyc10g061887.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 7.2e-07 56.6 26 100.0
Peaxi162Scf00080g00517 Petunia axillaris HOM05D000729 ORTHO05D001063 2.7e-06 54.7 48 66.7


User provided reference genes

Program Settings