Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g055800.1 Solanum lycopersicum HOM05D000118 ORTHO05D023113 2.3e-38 161.8 82 100.0
Solyc12g042020.3 Solanum lycopersicum HOM05D000118 ORTHO05D023113 5.4e-24 114.0 81 76.5
Solyc12g042030.3 Solanum lycopersicum HOM05D000118 ORTHO05D023113 3.5e-23 111.3 81 75.3
Solyc09g057930.3 Solanum lycopersicum HOM05D000118 ORTHO05D391978 2.7e-15 85.1 98 52.0
Solyc01g016680.3 Solanum lycopersicum HOM05D000118 ORTHO05D023113 8.2e-12 73.6 81 58.0
PGSC0003DMG402021981 Solanum tuberosum HOM05D000118 ORTHO05D000098 7.6e-10 67.0 43 74.4
PGSC0003DMG400001289 Solanum tuberosum HOM05D000118 ORTHO05D000098 2.2e-09 65.5 43 72.1
Solyc04g049270.1 Solanum lycopersicum HOM05D000118 ORTHO05D015421 1.4e-08 62.8 43 69.8
Nitab4.5_0007900g0010 Nicotiana tabacum HOM05D000118 ORTHO05D000098 3.2e-08 61.6 43 67.4
CAN.G793.13 Capsicum annuum HOM05D000118 ORTHO05D000098 5.5e-08 60.8 43 65.1
Nitab4.5_0000342g0150 Nicotiana tabacum HOM05D000118 ORTHO05D000098 9.3e-08 60.1 81 48.1
Solyc09g089740.3 Solanum lycopersicum HOM05D000118 ORTHO05D000098 1.2e-07 59.7 43 65.1
Sopen09g032670 Solanum pennellii HOM05D000118 ORTHO05D000098 1.2e-07 59.7 43 65.1
PGSC0003DMG400017246 Solanum tuberosum HOM05D000118 ORTHO05D000098 2.1e-07 58.9 43 62.8
Sopen09g032640 Solanum pennellii HOM05D000118 ORTHO05D000098 2.7e-07 58.5 43 65.1
Lj3g0003130 Lotus japonicus HOM05D000118 ORTHO05D000098 3.5e-07 58.2 43 65.1
Oeu063886.1 Olea europaea HOM05D000118 ORTHO05D000098 3.5e-07 58.2 43 62.8
CSS0009248 Camellia sinensis var. sinensis HOM05D000118 ORTHO05D000098 6.1e-07 57.4 46 60.9
Cc03_g05200 Coffea canephora HOM05D000118 ORTHO05D000098 6.1e-07 57.4 49 55.1
HanXRQChr03g0092071 Helianthus annuus HOM05D000118 ORTHO05D000098 6.1e-07 57.4 46 58.7
Hma1.2p1_0267F.1_g107570 Hydrangea macrophylla HOM05D000118 ORTHO05D000098 6.1e-07 57.4 43 62.8
Hma1.2p1_0310F.1_g120633 Hydrangea macrophylla HOM05D000118 ORTHO05D000098 6.1e-07 57.4 43 62.8
MD03G1245000 Malus domestica HOM05D000118 ORTHO05D000098 6.1e-07 57.4 43 62.8
CSS0016518 Camellia sinensis var. sinensis HOM05D000118 ORTHO05D000098 7.9e-07 57.0 46 60.9
CiPaw.01G187800 Carya illinoinensis HOM05D000118 ORTHO05D000098 7.9e-07 57.0 43 60.5
Gorai.006G249200 Gossypium raimondii HOM05D000118 ORTHO05D000098 7.9e-07 57.0 42 61.9
Nitab4.5_0000302g0120 Nicotiana tabacum HOM05D000118 ORTHO05D000098 7.9e-07 57.0 50 54.0
Gohir.D09G227124 Gossypium hirsutum HOM05D000118 ORTHO05D000098 1.0e-06 56.6 42 61.9
HanXRQChr03g0092121 Helianthus annuus HOM05D000118 ORTHO05D000098 1.0e-06 56.6 46 58.7
Actinidia04468 Actinidia chinensis HOM05D000118 ORTHO05D000098 1.3e-06 56.2 43 60.5
CAN.G793.22 Capsicum annuum HOM05D000118 ORTHO05D000098 1.3e-06 56.2 43 60.5
Haze_11340 Corylus avellana HOM05D000118 ORTHO05D025078 1.3e-06 56.2 49 53.1
Dinv29883 Davidia involucrata HOM05D000118 ORTHO05D000098 1.3e-06 56.2 43 60.5
Duzib138G1861 Durio zibethinus HOM05D000118 ORTHO05D000098 1.3e-06 56.2 43 60.5
ECA240G1804 Erigeron canadensis HOM05D000118 ORTHO05D000098 1.3e-06 56.2 46 60.9
Gohir.1Z049346 Gossypium hirsutum HOM05D000118 ORTHO05D000098 1.3e-06 56.2 43 65.1
Gohir.A02G037500 Gossypium hirsutum HOM05D000118 ORTHO05D000098 1.3e-06 56.2 43 65.1
Lj3g0000715 Lotus japonicus HOM05D000118 ORTHO05D000098 1.3e-06 56.2 42 64.3
MD16G1214100 Malus domestica HOM05D000118 ORTHO05D000098 1.3e-06 56.2 43 60.5
Medtr8g009110 Medicago truncatula HOM05D000118 ORTHO05D000098 1.3e-06 56.2 43 62.8
Manes.03G166400 Manihot esculenta HOM05D000118 ORTHO05D000098 1.8e-06 55.8 42 61.9
Manes.15G038700 Manihot esculenta HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
Medtr8g009090 Medicago truncatula HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
Medtr8g009160 Medicago truncatula HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
Medtr8g009170 Medicago truncatula HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
Medtr8g028435 Medicago truncatula HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
Psat4g221800 Pisum sativum HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
QL06p016799 Quercus lobata HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 60.5
Solyc09g010000.4 Solanum lycopersicum HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
Solyc09g089730.3 Solanum lycopersicum HOM05D000118 ORTHO05D000098 1.8e-06 55.8 42 59.5
Solyc09g089760.1 Solanum lycopersicum HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
Sopen09g032660 Solanum pennellii HOM05D000118 ORTHO05D000098 1.8e-06 55.8 42 59.5
Sopen09g032680 Solanum pennellii HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
TPR.G32128 Trifolium pratense HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 62.8
TAR365G0779 Trochodendron aralioides HOM05D000118 ORTHO05D000098 1.8e-06 55.8 43 60.5
Atru.chr4.2126 Acer truncatum HOM05D000118 ORTHO05D000098 2.3e-06 55.5 42 61.9
Gohir.A09G225600 Gossypium hirsutum HOM05D000118 ORTHO05D000098 2.3e-06 55.5 42 59.5
HanXRQChr03g0092131 Helianthus annuus HOM05D000118 ORTHO05D000098 2.3e-06 55.5 46 56.5
HanXRQChr03g0092151 Helianthus annuus HOM05D000118 ORTHO05D000098 2.3e-06 55.5 46 56.5
Lalb_Chr19g0133301 Lupinus albus HOM05D000118 ORTHO05D000098 2.3e-06 55.5 43 62.8
Solyc09g010040.3 Solanum lycopersicum HOM05D000118 ORTHO05D000098 2.3e-06 55.5 43 62.8
Sopen09g004750 Solanum pennellii HOM05D000118 ORTHO05D000098 2.3e-06 55.5 43 62.8
Sopen09g004780 Solanum pennellii HOM05D000118 ORTHO05D000098 2.3e-06 55.5 43 62.8
PGSC0003DMG400017247 Solanum tuberosum HOM05D000118 ORTHO05D000098 2.3e-06 55.5 43 60.5
TWI09G0143 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 2.3e-06 55.5 43 62.8
TWI09G1396 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 2.3e-06 55.5 43 62.8
VMungo1080G1146 Vigna mungo HOM05D000118 ORTHO05D000098 2.3e-06 55.5 43 62.8
CAN.G397.70 Capsicum annuum HOM05D000118 ORTHO05D000098 3.0e-06 55.1 42 61.9
ECA240G0873 Erigeron canadensis HOM05D000118 ORTHO05D000098 3.0e-06 55.1 43 58.1
HanXRQChr03g0092061 Helianthus annuus HOM05D000118 ORTHO05D000098 3.0e-06 55.1 43 58.1
Medtr1g043810 Medicago truncatula HOM05D000118 ORTHO05D000098 3.0e-06 55.1 46 58.7
Peaxi162Scf00024g01922 Petunia axillaris HOM05D000118 ORTHO05D025078 3.0e-06 55.1 43 58.1
PGSC0003DMG400017189 Solanum tuberosum HOM05D000118 ORTHO05D000098 3.0e-06 55.1 43 60.5
TAR365G0870 Trochodendron aralioides HOM05D000118 ORTHO05D000098 3.0e-06 55.1 43 60.5
Actinidia11339 Actinidia chinensis HOM05D000118 ORTHO05D000098 3.9e-06 54.7 43 60.5
CAN.G374.9 Capsicum annuum HOM05D000118 ORTHO05D000098 3.9e-06 54.7 50 52.0
CAN.G793.18 Capsicum annuum HOM05D000118 ORTHO05D000098 3.9e-06 54.7 42 59.5
Cc03_g05190 Coffea canephora HOM05D000118 ORTHO05D000098 3.9e-06 54.7 46 56.5
HanXRQChr03g0092201 Helianthus annuus HOM05D000118 ORTHO05D000098 3.9e-06 54.7 43 58.1
Lalb_Chr19g0133291 Lupinus albus HOM05D000118 ORTHO05D000098 3.9e-06 54.7 43 60.5
Medtr1g043775 Medicago truncatula HOM05D000118 ORTHO05D000098 3.9e-06 54.7 46 56.5
PGSC0003DMG400017248 Solanum tuberosum HOM05D000118 ORTHO05D000098 3.9e-06 54.7 46 58.7
PGSC0003DMG400038034 Solanum tuberosum HOM05D000118 ORTHO05D000098 3.9e-06 54.7 43 60.5
PGSC0003DMG400039221 Solanum tuberosum HOM05D000118 ORTHO05D000098 3.9e-06 54.7 43 60.5
TWI09G0340 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 3.9e-06 54.7 43 60.5
TAR636G0344 Trochodendron aralioides HOM05D000118 ORTHO05D000098 3.9e-06 54.7 43 60.5
CAN.G397.71 Capsicum annuum HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 60.5
CAN.G793.21 Capsicum annuum HOM05D000118 ORTHO05D000098 5.1e-06 54.3 42 59.5
CiPaw.01G187600 Carya illinoinensis HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 62.8
Ca_23139_v3 Cicer arietinum L. HOM05D000118 ORTHO05D000098 5.1e-06 54.3 42 61.9
Cc06_g06040 Coffea canephora HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 60.5
HanXRQChr03g0092081 Helianthus annuus HOM05D000118 ORTHO05D000098 5.1e-06 54.3 46 56.5
Oeu041597.1 Olea europaea HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 58.1
RcHm_v2.0_Chr4g0391961 Rosa chinensis HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 60.5
SGA_v2.0_scaffold308G48090 Striga asiatica HOM05D000118 ORTHO05D000098 5.1e-06 54.3 50 52.0
Thecc.04G250900 Theobroma cacao HOM05D000118 ORTHO05D000098 5.1e-06 54.3 39 61.5
Thecc.04G251600 Theobroma cacao HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 60.5
TAR365G0365 Trochodendron aralioides HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 58.1
TAR365G0394 Trochodendron aralioides HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 58.1
TAR365G0621 Trochodendron aralioides HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 58.1
TAR365G0747 Trochodendron aralioides HOM05D000118 ORTHO05D000098 5.1e-06 54.3 43 58.1
Manes.03G166600 Manihot esculenta HOM05D000118 ORTHO05D000098 6.7e-06 53.9 43 60.5
Peaxi162Scf00047g02318 Petunia axillaris HOM05D000118 ORTHO05D000098 6.7e-06 53.9 43 60.5
Potri.010G073300 Populus trichocarpa HOM05D000118 ORTHO05D000098 6.7e-06 53.9 43 58.1
Sabra10G0034900 Salix brachista HOM05D000118 ORTHO05D000098 6.7e-06 53.9 43 58.1
GSVIVG01027746001 Vitis vinifera HOM05D000118 ORTHO05D000098 6.7e-06 53.9 43 60.5
CiPaw.01G187500 Carya illinoinensis HOM05D000118 ORTHO05D000098 8.7e-06 53.5 43 60.5
Glyma.15G257300 Glycine max HOM05D000118 ORTHO05D000098 8.7e-06 53.5 43 62.8
Medtr2g069060 Medicago truncatula HOM05D000118 ORTHO05D000098 8.7e-06 53.5 43 58.1
Potri.010G073166 Populus trichocarpa HOM05D000118 ORTHO05D000098 8.7e-06 53.5 43 58.1
Prupe.1G035900 Prunus persica HOM05D000118 ORTHO05D000098 8.7e-06 53.5 43 60.5
Prupe.1G036100 Prunus persica HOM05D000118 ORTHO05D000098 8.7e-06 53.5 43 60.5
PGSC0003DMG402008946 Solanum tuberosum HOM05D000118 ORTHO05D000098 8.7e-06 53.5 43 60.5
TAR636G0742 Trochodendron aralioides HOM05D000118 ORTHO05D000098 8.7e-06 53.5 43 60.5
HPP92_004972 Vanilla planifolia HOM05D000118 ORTHO05D000098 8.7e-06 53.5 50 52.0
GSVIVG01027744001 Vitis vinifera HOM05D000118 ORTHO05D000098 8.7e-06 53.5 43 60.5


User provided reference genes

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