Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 0.0e+00 1412.9 720 100.0
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 0.0e+00 1354.3 694 98.8
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 4.9e-312 1074.3 721 75.0
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 9.2e-309 1063.1 722 74.5
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 6.6e-307 1057.0 700 76.4
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 1.9e-306 1055.4 721 74.3
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 1.0e-304 1049.7 721 73.1
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 1.4e-301 1039.3 716 73.3
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 2.4e-301 1038.5 721 71.3
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 4.1e-301 1037.7 721 71.3
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 2.0e-300 1035.4 725 72.1
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 3.9e-299 1031.2 721 70.7
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 3.3e-298 1028.1 721 70.9
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 2.1e-297 1025.4 724 71.4
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 3.6e-297 1024.6 721 72.8
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 3.6e-297 1024.6 790 67.3
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 1.8e-296 1022.3 721 70.7
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 5.2e-296 1020.8 722 70.2
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 2.2e-294 1015.4 721 70.3
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 4.9e-294 1014.2 723 71.9
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 2.4e-293 1011.9 723 69.6
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 4.1e-293 1011.1 723 69.8
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 5.4e-293 1010.7 721 70.2
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 2.7e-292 1008.4 723 69.8
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.3e-291 1006.1 721 70.6
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 6.6e-291 1003.8 721 70.9
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 6.8e-288 993.8 723 69.2
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 2.6e-287 991.9 719 70.0
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 2.9e-286 988.4 721 68.9
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 2.9e-286 988.4 721 69.1
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 4.9e-286 987.6 721 68.7
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 5.4e-285 984.2 723 67.8
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 1.3e-283 979.5 723 68.5
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 5.1e-283 977.6 833 62.4
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 8.6e-283 976.9 731 68.4
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 1.9e-282 975.7 720 67.5
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 9.6e-282 973.4 720 67.4
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 8.1e-281 970.3 720 67.1
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 2.4e-280 968.8 729 67.8
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.1e-280 968.4 720 66.9
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 5.2e-280 967.6 720 66.8
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 6.9e-280 967.2 720 66.8
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 6.9e-280 967.2 730 66.7
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 7.6e-279 963.8 718 66.9
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 8.4e-278 960.3 721 68.1
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 2.4e-277 958.7 721 67.8
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 4.6e-276 954.5 709 67.1
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 3.9e-275 951.4 725 66.8
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 3.3e-274 948.3 721 66.9
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 3.1e-272 941.8 721 65.5
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 5.8e-271 937.6 723 66.4
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 5.8e-271 937.6 720 65.1
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 2.9e-270 935.3 719 66.2
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 4.6e-268 927.9 720 65.3
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 3.9e-267 924.9 718 65.3
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 2.8e-265 918.7 731 65.0
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 1.4e-264 916.4 728 65.7
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 5.8e-263 911.0 721 64.8
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 1.9e-261 906.0 724 64.9
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 9.3e-261 903.7 719 64.7
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 2.7e-260 902.1 716 64.4
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 4.6e-260 901.4 621 72.8
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 6.7e-259 897.5 721 61.6
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 1.9e-258 896.0 719 63.0
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 5.1e-251 871.3 719 60.1
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 9.7e-250 867.1 714 60.2
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 2.6e-247 859.0 598 74.4
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 5.9e-247 857.8 715 59.9
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 5.9e-247 857.8 650 67.2
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 1.3e-246 856.7 718 60.6
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 2.9e-246 855.5 714 59.8
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 8.5e-246 854.0 714 59.5
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 2.5e-242 842.4 714 58.7
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 2.5e-242 842.4 714 58.7
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 2.5e-242 842.4 714 58.7
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 4.3e-242 841.6 714 58.4
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 3.1e-240 835.5 715 58.5
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 4.1e-240 835.1 715 58.5
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 1.1e-234 817.0 721 58.9
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 9.7e-226 787.3 723 56.6
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.7e-225 786.6 723 56.4
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 1.9e-213 746.5 589 66.0
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 8.9e-203 711.1 661 56.0
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 4.5e-199 698.7 670 57.0
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.3e-198 697.2 482 71.0
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 9.2e-192 674.5 730 50.5
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 8.0e-188 661.4 467 72.4
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 1.4e-187 660.6 425 78.8
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 7.8e-183 644.8 676 51.3
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 2.8e-180 636.3 662 51.7
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.0e-174 617.8 668 49.9
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 5.1e-174 615.5 675 50.1
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 2.5e-165 586.6 476 66.8
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 2.4e-163 580.1 435 69.4
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 3.7e-148 529.6 664 45.5
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 4.8e-148 529.3 429 59.7
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 4.5e-146 522.7 506 55.5
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 1.6e-132 477.6 379 64.1
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 1.0e-129 468.4 658 40.3
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 2.2e-129 467.2 300 75.7
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.6e-127 461.1 391 57.5
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 1.1e-117 428.3 391 58.1
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 6.1e-103 379.4 335 59.4
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 3.3e-101 373.6 348 60.1
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 9.7e-101 372.1 268 71.3
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 3.7e-100 370.2 203 87.2
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 1.2e-98 365.2 311 61.4
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 1.5e-96 358.2 289 62.6
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.7e-89 334.7 594 36.9
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 9.5e-88 328.9 229 70.3
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 1.0e-81 308.9 237 62.9
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.7e-50 204.5 153 69.9
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 1.9e-48 198.4 158 65.8
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 4.9e-44 183.7 147 61.9
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 7.8e-42 176.4 106 86.8
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 1.5e-40 172.2 133 64.7
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 1.6e-31 142.1 725 25.9
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 7.4e-24 116.7 71 81.7
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 5.1e-17 94.0 69 68.1
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 1.7e-12 79.0 684 21.9
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.4e-11 75.9 69 60.9
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 1.3e-07 62.8 52 51.9
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 1.1e-06 59.7 45 57.8


User provided reference genes

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