Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.4e-27 125.6 63 100.0
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.2e-25 118.2 63 93.7
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 3.5e-23 110.9 63 88.9
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 3.5e-23 110.9 63 88.9
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 3.5e-23 110.9 63 88.9
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 3.5e-23 110.9 63 88.9
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 3.5e-23 110.9 63 88.9
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 7.9e-23 109.8 63 87.3
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 1.3e-22 109.0 63 87.3
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 3.9e-22 107.5 63 85.7
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 3.9e-22 107.5 63 85.7
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 8.7e-22 106.3 63 84.1
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 3.3e-21 104.4 63 79.4
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 1.6e-20 102.1 63 82.5
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 1.6e-20 102.1 63 84.1
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 9.0e-19 96.3 62 72.6
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.2e-18 95.9 63 81.0
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 2.0e-18 95.1 63 71.4
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 4.5e-18 94.0 63 71.4
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 7.6e-18 93.2 63 76.2
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 7.6e-18 93.2 63 69.8
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 7.6e-18 93.2 63 66.7
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 1.3e-17 92.4 63 74.6
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 1.3e-17 92.4 63 68.3
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 2.2e-17 91.7 63 66.7
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.2e-17 91.7 62 66.1
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.2e-17 91.7 62 66.1
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 66.7
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 5.0e-17 90.5 63 68.3
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 8.5e-17 89.7 63 65.1
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 8.5e-17 89.7 63 65.1
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 8.5e-17 89.7 63 65.1
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.1e-16 89.4 63 68.3
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 1.4e-16 89.0 63 66.7
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 1.4e-16 89.0 63 66.7
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 1.4e-16 89.0 63 66.7
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.4e-16 89.0 63 65.1
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 1.9e-16 88.6 63 63.5
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 2.5e-16 88.2 63 65.1
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 2.5e-16 88.2 63 63.5
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 4.2e-16 87.4 63 66.7
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 4.2e-16 87.4 63 65.1
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 5.5e-16 87.0 63 66.7
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 5.5e-16 87.0 63 66.7
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 5.5e-16 87.0 62 66.1
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 5.5e-16 87.0 62 66.1
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 5.5e-16 87.0 62 66.1
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 5.5e-16 87.0 63 63.5
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 5.5e-16 87.0 62 64.5
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 5.5e-16 87.0 63 68.3
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 7.2e-16 86.7 52 84.6
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 7.2e-16 86.7 63 66.7
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 9.3e-16 86.3 63 63.5
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 1.6e-15 85.5 56 75.0
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 2.1e-15 85.1 63 63.5
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 2.7e-15 84.7 54 83.3
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 2.7e-15 84.7 63 63.5
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 2.7e-15 84.7 63 63.5
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 3.6e-15 84.3 62 62.9
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 3.6e-15 84.3 63 65.1
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 3.6e-15 84.3 63 65.1
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 3.6e-15 84.3 63 65.1
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 3.6e-15 84.3 62 62.9
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 4.6e-15 84.0 63 61.9
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 4.6e-15 84.0 63 61.9
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 6.1e-15 83.6 63 61.9
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 6.1e-15 83.6 63 61.9
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 7.9e-15 83.2 62 67.7
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 1.0e-14 82.8 63 60.3
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.3e-14 82.4 63 61.9
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.3e-14 82.4 63 61.9
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 1.3e-14 82.4 63 61.9
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 1.8e-14 82.0 63 60.3
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 1.8e-14 82.0 63 58.7
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.3e-14 81.6 62 58.1
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.3e-14 81.6 62 58.1
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 3.9e-14 80.9 63 58.7
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.9e-14 80.9 62 58.1
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 3.9e-14 80.9 63 58.7
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 6.7e-14 80.1 63 61.9
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.5e-13 79.0 54 75.9
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 2.5e-13 78.2 48 81.2
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 3.3e-13 77.8 61 60.7
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 3.3e-13 77.8 54 68.5
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.7e-13 77.0 61 57.4
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 1.6e-12 75.5 63 55.6
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 3.7e-12 74.3 63 54.0
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 6.3e-12 73.6 45 82.2
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.4e-11 72.4 63 66.7
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 2.4e-11 71.6 53 64.2
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 3.1e-11 71.2 52 63.5
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 9.1e-11 69.7 50 68.0
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 1.5e-10 68.9 57 59.6
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 6.5e-09 63.5 38 84.2
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 1.1e-08 62.8 35 88.6
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 1.1e-08 62.8 35 88.6
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 9.4e-08 59.7 35 85.7
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 7.9e-07 56.6 46 56.5
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 7.9e-07 56.6 46 56.5
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.0e-06 56.2 46 60.9
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 2.3e-06 55.1 59 47.5


User provided reference genes

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