Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g047840.3 Solanum lycopersicum HOM05D007112 ORTHO05D008930 1.5e-138 496.1 237 100.0
Sopen09g015950 Solanum pennellii HOM05D007112 ORTHO05D008930 3.8e-134 481.5 233 98.3
PGSC0003DMG400021909 Solanum tuberosum HOM05D007112 ORTHO05D008930 1.8e-128 462.6 242 93.0
Peaxi162Scf02239g00022 Petunia axillaris HOM05D007112 ORTHO05D008930 1.6e-105 386.3 219 81.3
Nitab4.5_0010469g0020 Nicotiana tabacum HOM05D007112 ORTHO05D008930 3.1e-104 382.1 229 77.3
Nitab4.5_0000038g0350 Nicotiana tabacum HOM05D007112 ORTHO05D008930 2.9e-102 375.6 233 76.0
Lj2A1111T23 Lonicera japonica HOM05D007112 ORTHO05D008930 3.2e-69 265.8 225 56.0
Hma1.2p1_1043F.1_g251280 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 2.1e-68 263.1 220 55.9
Cc01_g15870 Coffea canephora HOM05D007112 ORTHO05D008930 3.6e-68 262.3 234 55.6
Migut.D00774 Erythranthe guttata HOM05D007112 ORTHO05D008930 1.4e-67 260.4 228 53.1
MSTRG.18505 Avicennia marina HOM05D007112 ORTHO05D008930 1.2e-66 257.3 221 54.8
Oeu013523.1 Olea europaea HOM05D007112 ORTHO05D008930 2.6e-66 256.1 220 55.9
Atru.chr6.3529 Acer truncatum HOM05D007112 ORTHO05D008930 1.1e-64 250.8 217 54.4
Dinv28792 Davidia involucrata HOM05D007112 ORTHO05D008930 5.9e-63 245.0 217 53.5
SalBow3G4154 Salvia bowleyana HOM05D007112 ORTHO05D008930 3.8e-62 242.3 227 52.4
Ciclev10016325m.g Citrus clementina HOM05D007112 ORTHO05D008930 1.5e-61 240.4 228 50.4
Rhsim01G0247600 Rhododendron simsii HOM05D007112 ORTHO05D008930 1.9e-61 240.0 222 54.5
GSVIVG01001529001 Vitis vinifera HOM05D007112 ORTHO05D008930 5.5e-61 238.4 220 50.5
LjContig00389g0002281 Lotus japonicus HOM05D007112 ORTHO05D008930 2.1e-60 236.5 216 53.7
Lalb_Chr07g0194661 Lupinus albus HOM05D007112 ORTHO05D008930 6.1e-60 235.0 221 52.0
Gohir.A07G195600 Gossypium hirsutum HOM05D007112 ORTHO05D008930 5.2e-59 231.9 224 50.9
Sabra14G0134200 Salix brachista HOM05D007112 ORTHO05D008930 1.2e-58 230.7 227 52.0
VMungo0331G1777 Vigna mungo HOM05D007112 ORTHO05D008930 1.2e-58 230.7 218 52.8
Gorai.001G227200 Gossypium raimondii HOM05D007112 ORTHO05D008930 1.5e-58 230.3 223 49.8
arahy.Tifrunner.gnm1.ann1.T2R7SH Arachis hypogaea HOM05D007112 ORTHO05D008930 2.0e-58 229.9 217 52.5
Duzib133G1446 Durio zibethinus HOM05D007112 ORTHO05D008930 2.6e-58 229.6 220 47.3
Actinidia23803 Actinidia chinensis HOM05D007112 ORTHO05D008930 5.7e-58 228.4 217 51.2
Gohir.D07G202200 Gossypium hirsutum HOM05D007112 ORTHO05D008930 5.7e-58 228.4 224 51.3
vmacro14688 Vaccinium macrocarpon HOM05D007112 ORTHO05D008930 9.8e-58 227.6 228 51.8
Cfa017735 Carpinus fangiana HOM05D007112 ORTHO05D008930 1.7e-57 226.9 218 52.3
Phvul.010G036300 Phaseolus vulgaris HOM05D007112 ORTHO05D008930 2.8e-57 226.1 219 53.4
TAR362G0557 Trochodendron aralioides HOM05D007112 ORTHO05D008930 4.8e-57 225.3 220 50.9
ECA247G2139 Erigeron canadensis HOM05D000092 ORTHO05D008930 6.3e-57 224.9 229 49.3
Medtr8g010140 Medicago truncatula HOM05D007112 ORTHO05D008930 6.3e-57 224.9 218 51.4
TWI36G0064 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 1.4e-56 223.8 223 48.9
Glyma.03G097000 Glycine max HOM05D007112 ORTHO05D008930 3.1e-56 222.6 222 50.5
Lsat_1_v5_gn_9_16901 Lactuca sativa HOM05D007112 ORTHO05D008930 7.0e-56 221.5 222 49.1
COL.COLO4_34270 Corchorus olitorius HOM05D007112 ORTHO05D008930 9.1e-56 221.1 220 47.7
CsaV3_7G026720 Cucumis sativus L. HOM05D007112 ORTHO05D008930 2.0e-55 219.9 222 48.6
MD05G1153700 Malus domestica HOM05D007112 ORTHO05D008930 2.7e-55 219.5 228 47.8
Thecc.01G207600 Theobroma cacao HOM05D007112 ORTHO05D008930 3.5e-55 219.2 221 46.6
HanXRQChr08g0231791 Helianthus annuus HOM05D007112 ORTHO05D008930 4.5e-55 218.8 224 49.6
Psat4g208280 Pisum sativum HOM05D007112 ORTHO05D008930 4.5e-55 218.8 217 49.8
THA.LOC104819012 Tarenaya hassleriana HOM05D007112 ORTHO05D008930 4.5e-55 218.8 229 47.2
CSS0005940 Camellia sinensis var. sinensis HOM05D007112 ORTHO05D008930 5.9e-55 218.4 227 49.8
Prupe.8G187100 Prunus persica HOM05D007112 ORTHO05D008930 5.9e-55 218.4 229 50.7
Carub.0003s0707 Capsella rubella HOM05D007112 ORTHO05D008930 1.7e-54 216.9 226 47.3
TPR.G17379 Trifolium pratense HOM05D007112 ORTHO05D008930 1.7e-54 216.9 219 50.7
Ca_23159_v3 Cicer arietinum L. HOM05D007112 ORTHO05D008930 2.3e-54 216.5 221 49.8
Glyma.07G124300 Glycine max HOM05D007112 ORTHO05D008930 2.3e-54 216.5 229 46.7
CAN.G50.11 Capsicum annuum HOM05D007112 ORTHO05D008930 2.9e-54 216.1 134 76.9
QL05p089159 Quercus lobata HOM05D007112 ORTHO05D008930 3.8e-54 215.7 218 51.8
RcHm_v2.0_Chr6g0282211 Rosa chinensis HOM05D007112 ORTHO05D008930 1.9e-53 213.4 225 48.0
AUR62028645 Chenopodium quinoa HOM05D007112 ORTHO05D008930 3.3e-53 212.6 231 46.3
unitig_60.g25572 Utricularia gibba HOM05D007112 ORTHO05D008930 4.2e-53 212.2 219 49.3
Eucgr.K02360 Eucalyptus grandis HOM05D007112 ORTHO05D008930 7.2e-53 211.5 224 48.7
CANSAT01G1474 Cannabis sativa HOM05D007112 ORTHO05D008930 1.2e-52 210.7 232 46.6
CARHR082180 Cardamine hirsuta HOM05D007112 ORTHO05D008930 3.6e-52 209.1 217 47.9
ClCG09G008370 Citrullus lanatus HOM05D007112 ORTHO05D008930 3.6e-52 209.1 234 44.4
FAN15G3611 Fragaria x ananassa HOM05D007112 ORTHO05D008930 4.7e-52 208.8 217 47.9
FvH4_2g17490 Fragaria vesca HOM05D007112 ORTHO05D008930 1.0e-51 207.6 217 48.4
Sed0011312 Sechium edule HOM05D007112 ORTHO05D008930 1.0e-51 207.6 219 47.0
CiPaw.14G038400 Carya illinoinensis HOM05D007112 ORTHO05D008930 2.3e-51 206.5 186 53.8
BraA05t22800Z Brassica rapa HOM05D007112 ORTHO05D008930 3.0e-51 206.1 216 48.6
PSO675G4719 Papaver somniferum HOM05D007112 ORTHO05D008930 3.0e-51 206.1 247 44.9
Hund02806 Selenicereus undatus HOM05D007112 ORTHO05D008930 3.0e-51 206.1 227 44.9
Aqoxy5G04050 Aquilegia oxysepala HOM05D007112 ORTHO05D008930 5.2e-51 205.3 221 44.3
AUR62008068 Chenopodium quinoa HOM05D007112 ORTHO05D008930 5.2e-51 205.3 231 44.6
Sc24g0003360 Simmondsia chinensis HOM05D007112 ORTHO05D008930 1.5e-50 203.8 233 45.9
Aa31LG5G18060 Aethionema arabicum HOM05D007112 ORTHO05D008930 2.6e-50 203.0 224 46.9
Sp3g06430 Schrenkiella parvula HOM05D007112 ORTHO05D008930 2.6e-50 203.0 217 47.0
AT3G07525 Arabidopsis thaliana HOM05D007112 ORTHO05D008930 7.5e-50 201.4 226 46.0
A05p40690 Brassica napus HOM05D007112 ORTHO05D008930 7.5e-50 201.4 215 48.8
Thhalv10022158m.g Eutrema salsugineum HOM05D007112 ORTHO05D008930 2.2e-49 199.9 220 48.2
PSO732G0401 Papaver somniferum HOM05D007112 ORTHO05D008930 2.2e-49 199.9 243 42.8
PGR044G1116 Punica granatum HOM05D007112 ORTHO05D008930 3.7e-49 199.1 228 43.0
BolC5t34634H Brassica oleracea HOM05D007112 ORTHO05D008930 6.3e-49 198.4 218 46.3
arahy.Tifrunner.gnm1.ann1.X2Q8CL Arachis hypogaea HOM05D007112 ORTHO05D008930 1.1e-48 197.6 214 46.3
Hma1.2p1_1043F.1_g251290 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 1.1e-48 197.6 139 63.3
BcaC05g29544 Brassica carinata HOM05D007112 ORTHO05D008930 1.8e-48 196.8 217 46.1
SHI30551 Sapria himalayana HOM05D007112 ORTHO05D008930 7.8e-47 191.4 229 41.9
C05p59800 Brassica napus HOM05D007112 ORTHO05D008930 2.3e-46 189.9 217 46.1
FAN24G0137 Fragaria x ananassa HOM05D007112 ORTHO05D008930 3.6e-44 182.6 219 45.2
Manes.13G056200 Manihot esculenta HOM05D007112 ORTHO05D008930 6.1e-44 181.8 137 61.3
ATR0752G208 Amborella trichopoda HOM05D007112 ORTHO05D008930 8.0e-44 181.4 224 43.3
Nn7g37436 Nelumbo nucifera HOM05D007112 ORTHO05D008930 8.0e-44 181.4 137 62.8
Ah.11g050810 Amaranthus hybridus HOM05D007112 ORTHO05D008930 1.2e-42 177.6 227 39.6
MELO3C021125.2 Cucumis melo HOM05D007112 ORTHO05D008930 8.3e-41 171.4 139 53.2
CDE05G1497 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 7.8e-39 164.9 169 52.7
DCAR_018609 Daucus carota HOM05D007112 ORTHO05D008930 4.7e-36 155.6 162 46.9
Zm00001eb425740 Zea mays HOM05D007112 ORTHO05D008930 6.2e-36 155.2 220 37.3
HPP92_001291 Vanilla planifolia HOM05D007112 ORTHO05D008930 6.8e-35 151.8 217 37.8
MBI10_g35388_MAGBIO Magnolia biondii HOM05D007112 ORTHO05D008930 5.8e-34 148.7 258 34.9
Mapoly0002s0314 Marchantia polymorpha HOM05D007112 ORTHO05D008930 2.1e-31 140.2 178 39.3
Os04g0497350 Oryza sativa ssp. japonica HOM05D007112 ORTHO05D008930 1.0e-30 137.9 215 35.8
HanXRQChr03g0082541 Helianthus annuus HOM05D007112 ORTHO05D008930 5.1e-30 135.6 103 60.2
AagrBONN_evm.TU.Sc2ySwM_344.2017 Anthoceros agrestis HOM05D007112 ORTHO05D008930 2.1e-28 130.2 189 36.0
Pp3c26_2050 Physcomitrium patens HOM05D007112 ORTHO05D008930 1.1e-24 117.9 206 33.0
Cpa.g.sc8.40 Carica papaya HOM05D007112 ORTHO05D008930 3.5e-23 112.8 136 42.6
Haze_03375 Corylus avellana HOM05D007112 ORTHO05D008930 1.1e-21 107.8 149 40.3
EL10Ac5g10586 Beta vulgaris HOM05D007112 ORTHO05D008930 3.8e-17 92.8 93 45.2
SGA_v2.0_scaffold29G12307 Striga asiatica HOM05D007112 ORTHO05D008930 6.4e-17 92.0 154 37.0
MD10G1148000 Malus domestica HOM05D007112 ORTHO05D008930 7.1e-16 88.6 120 39.2
SMO141G0021 Selaginella moellendorffii HOM05D007112 ORTHO05D008930 1.0e-14 84.7 105 37.1
EL10Ac5g10588 Beta vulgaris HOM05D007112 ORTHO05D008930 6.6e-14 82.0 64 60.9
CDE05G2169 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 9.6e-13 78.2 129 40.3
Haze_03371 Corylus avellana HOM05D007112 ORTHO05D008930 3.2e-08 63.2 94 40.4
TWI18G1453 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 1.2e-07 61.2 95 30.5
C04p34930 Brassica napus HOM05D007112 ORTHO05D008930 3.5e-07 59.7 107 34.6
Haze_03374 Corylus avellana HOM05D000072 ORTHO05D000026 3.5e-07 59.7 94 38.3


User provided reference genes

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