Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g042230.2 Solanum lycopersicum HOM05D007999 ORTHO05D000248 3.4e-51 204.9 120 100.0
Sopen09g015370 Solanum pennellii HOM05D007999 ORTHO05D000248 2.0e-43 179.1 110 93.6
PGSC0003DMG400031466 Solanum tuberosum HOM05D007999 ORTHO05D000248 2.5e-41 172.2 120 90.8
Nitab4.5_0000048g0020 Nicotiana tabacum HOM05D007999 ORTHO05D000248 1.7e-29 132.9 124 63.7
Nitab4.5_0004433g0050 Nicotiana tabacum HOM05D007999 ORTHO05D000248 7.0e-28 127.5 124 61.3
Manes.09G117900 Manihot esculenta HOM05D007999 ORTHO05D000248 2.8e-21 105.5 119 49.6
Gohir.A03G087400 Gossypium hirsutum HOM05D007999 ORTHO05D000248 2.4e-20 102.4 120 50.0
Gohir.D02G108100 Gossypium hirsutum HOM05D007999 ORTHO05D000248 2.4e-20 102.4 120 50.0
Thecc.04G151500 Theobroma cacao HOM05D007999 ORTHO05D000248 3.1e-20 102.1 118 50.0
Potri.016G136800 Populus trichocarpa HOM05D007999 ORTHO05D000248 5.3e-20 101.3 129 49.6
Haze_21176 Corylus avellana HOM05D007999 ORTHO05D000248 1.6e-19 99.8 118 46.6
Hma1.2p1_0537F.1_g174340 Hydrangea macrophylla HOM05D007999 ORTHO05D000248 1.6e-19 99.8 119 57.1
Oeu060433.1 Olea europaea HOM05D007999 ORTHO05D000248 2.7e-19 99.0 120 48.3
CiPaw.09G221400 Carya illinoinensis HOM05D007999 ORTHO05D000248 3.5e-19 98.6 112 49.1
Gorai.005G122700 Gossypium raimondii HOM05D007999 ORTHO05D000248 7.7e-19 97.4 120 48.3
Rhsim05G0230600 Rhododendron simsii HOM05D007999 ORTHO05D000248 7.7e-19 97.4 122 48.4
Actinidia11508 Actinidia chinensis HOM05D007999 ORTHO05D000248 1.3e-18 96.7 123 46.3
Cfa017033 Carpinus fangiana HOM05D007999 ORTHO05D000248 1.3e-18 96.7 119 45.4
Peaxi162Scf00732g00333 Petunia axillaris HOM05D007999 ORTHO05D000248 1.3e-18 96.7 120 61.7
RcHm_v2.0_Chr3g0460461 Rosa chinensis HOM05D007999 ORTHO05D000248 1.7e-18 96.3 120 46.7
Migut.J00037 Erythranthe guttata HOM05D007999 ORTHO05D000248 2.2e-18 95.9 124 48.4
FvH4_6g09860 Fragaria vesca HOM05D007999 ORTHO05D000248 2.2e-18 95.9 121 42.1
Sabra04G0153500 Salix brachista HOM05D007999 ORTHO05D000248 2.2e-18 95.9 127 46.5
FAN02G1196 Fragaria x ananassa HOM05D007999 ORTHO05D000248 6.5e-18 94.4 122 41.0
Phvul.010G070300 Phaseolus vulgaris HOM05D007999 ORTHO05D000248 4.2e-17 91.7 121 41.3
COL.COLO4_06481 Corchorus olitorius HOM05D007752 ORTHO05D000248 1.2e-16 90.1 93 52.7
Prupe.6G293700 Prunus persica HOM05D007999 ORTHO05D000248 1.6e-16 89.7 125 45.6
Ciclev10013035m.g Citrus clementina HOM05D007999 ORTHO05D000248 2.1e-16 89.4 133 44.4
Psat7g234760 Pisum sativum HOM05D007999 ORTHO05D000248 2.1e-16 89.4 122 45.1
Dinv25344 Davidia involucrata HOM05D007999 ORTHO05D000248 4.7e-16 88.2 107 49.5
Glyma.01G133200 Glycine max HOM05D007999 ORTHO05D000248 8.0e-16 87.4 120 40.0
Lsat_1_v5_gn_8_107720 Lactuca sativa HOM05D007999 ORTHO05D000248 8.0e-16 87.4 123 46.3
VMungo0331G0380 Vigna mungo HOM05D007999 ORTHO05D000248 8.0e-16 87.4 120 40.0
MSTRG.5499 Avicennia marina HOM05D007999 ORTHO05D000248 1.0e-15 87.0 120 43.3
Glyma.03G034300 Glycine max HOM05D007999 ORTHO05D000248 2.3e-15 85.9 118 39.8
QL07p032111 Quercus lobata HOM05D007999 ORTHO05D000248 4.0e-15 85.1 127 40.2
SalBow8G1753 Salvia bowleyana HOM05D007999 ORTHO05D000248 8.8e-15 84.0 116 45.7
Lalb_Chr07g0190371 Lupinus albus HOM05D007999 ORTHO05D000248 2.0e-14 82.8 114 43.9
Gohir.A10G150800 Gossypium hirsutum HOM05D007999 ORTHO05D000248 2.6e-14 82.4 120 45.0
Medtr4g028110 Medicago truncatula HOM05D007999 ORTHO05D000248 3.4e-14 82.0 120 43.3
SGA_v2.0_scaffold373G50183 Striga asiatica HOM05D007999 ORTHO05D000248 4.4e-14 81.6 120 43.3
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.3e-13 80.1 112 44.6
Lalb_Chr03g0043771 Lupinus albus HOM05D007999 ORTHO05D000248 1.7e-13 79.7 126 42.9
Peaxi162Scf00732g00031 Petunia axillaris HOM05D007752 ORTHO05D000248 1.7e-13 79.7 85 55.3
Lj3g0012389 Lotus japonicus HOM05D007999 ORTHO05D000248 3.7e-13 78.6 121 39.7
Gohir.D10G115500 Gossypium hirsutum HOM05D007999 ORTHO05D000248 4.8e-13 78.2 112 44.6
Gorai.011G127200 Gossypium raimondii HOM05D007999 ORTHO05D000248 4.8e-13 78.2 112 44.6
TPR.G14122 Trifolium pratense HOM05D007999 ORTHO05D000248 4.8e-13 78.2 121 41.3
Psat3g118800 Pisum sativum HOM05D007999 ORTHO05D000248 1.8e-12 76.3 116 41.4
Atru.chr8.114 Acer truncatum HOM05D007999 ORTHO05D000248 3.1e-12 75.5 140 37.9
FAN14G1029 Fragaria x ananassa HOM05D007752 ORTHO05D009994 3.1e-12 75.5 111 43.2
Medtr7g073270 Medicago truncatula HOM05D007999 ORTHO05D000248 4.1e-12 75.1 116 43.1
TAR267G0002 Trochodendron aralioides HOM05D007999 ORTHO05D000248 4.1e-12 75.1 117 42.7
TAR636G2047 Trochodendron aralioides HOM05D007999 ORTHO05D000248 5.4e-12 74.7 117 41.9
Ah.08g209300 Amaranthus hybridus HOM05D007999 ORTHO05D000248 1.2e-11 73.6 124 35.5
TPR.G5017 Trifolium pratense HOM05D007999 ORTHO05D000248 1.6e-11 73.2 119 43.7
Ca_26988_v3 Cicer arietinum L. HOM05D007999 ORTHO05D000248 3.5e-11 72.0 118 39.8
Phvul.008G082700 Phaseolus vulgaris HOM05D007999 ORTHO05D000248 1.7e-10 69.7 116 40.5
ClCG10G022740 Citrullus lanatus HOM05D007999 ORTHO05D000248 3.8e-10 68.6 123 39.0
Cpa.g.sc86.58 Carica papaya HOM05D007999 ORTHO05D000248 1.1e-09 67.0 115 36.5
AUR62006417 Chenopodium quinoa HOM05D007752 ORTHO05D000248 1.1e-09 67.0 129 38.0
AUR62029765 Chenopodium quinoa HOM05D007752 ORTHO05D009994 1.1e-09 67.0 95 44.2
VMungo1383G2835 Vigna mungo HOM05D007999 ORTHO05D000248 1.1e-09 67.0 111 38.7
ECA236G4781 Erigeron canadensis HOM05D007999 ORTHO05D000248 2.5e-09 65.9 44 68.2
Lj1g0020119 Lotus japonicus HOM05D007999 ORTHO05D000248 4.2e-09 65.1 118 41.5
Sed0006729 Sechium edule HOM05D007999 ORTHO05D000248 5.5e-09 64.7 129 41.1
Aqoxy4G02427 Aquilegia oxysepala HOM05D007999 ORTHO05D000248 7.2e-09 64.3 118 38.1
Nn2g10298 Nelumbo nucifera HOM05D007999 ORTHO05D000248 9.5e-09 63.9 114 41.2
Sc20g0006970 Simmondsia chinensis HOM05D007999 ORTHO05D000248 1.2e-08 63.5 117 40.2
Thhalv10006368m.g Eutrema salsugineum HOM05D007999 ORTHO05D000248 1.6e-08 63.2 122 36.9
Oeu060213.1 Olea europaea HOM05D007999 ORTHO05D000248 1.6e-08 63.2 94 40.4
unitig_749.g14092 Utricularia gibba HOM05D007999 ORTHO05D000248 2.1e-08 62.8 85 43.5
Oeu060211.1 Olea europaea HOM05D000784 ORTHO05D000248 2.8e-08 62.4 89 40.4
EL10Ac7g17101 Beta vulgaris HOM05D007752 ORTHO05D000248 4.7e-08 61.6 126 36.5
MBI03_g22788_MAGBIO Magnolia biondii HOM05D007999 ORTHO05D000248 2.3e-07 59.3 90 43.3
Sp5g05490 Schrenkiella parvula HOM05D007999 ORTHO05D000248 3.0e-07 58.9 116 32.8
Carub.0005s2390 Capsella rubella HOM05D007999 ORTHO05D000248 6.8e-07 57.8 114 35.1
Actinidia29032 Actinidia chinensis HOM05D007752 ORTHO05D009994 2.0e-06 56.2 85 40.0
A09p50020 Brassica napus HOM05D002367 ORTHO05D009515 5.7e-06 54.7 112 32.1
BraA09t40452Z Brassica rapa HOM05D007999 ORTHO05D000248 5.7e-06 54.7 112 32.1


User provided reference genes

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