Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g031890.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 4.4e-49 197.6 96 100.0
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 1.1e-26 123.2 59 96.6
Sopen07g005500 Solanum pennellii HOM05D005327 ORTHO05D006655 1.1e-26 123.2 59 96.6
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 2.1e-19 99.0 59 78.0
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 1.8e-18 95.9 59 76.3
Peaxi162Scf00889g00111 Petunia axillaris HOM05D005327 ORTHO05D006655 1.2e-17 93.2 59 72.9
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 3.9e-13 78.2 56 60.7
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 1.1e-12 76.6 58 60.3
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 1.9e-12 75.9 58 60.3
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 3.3e-12 75.1 58 56.9
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 4.3e-12 74.7 58 60.3
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 1.1e-10 70.1 58 55.2
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 1.1e-10 70.1 58 56.9
Lj5A713T18 Lonicera japonica HOM05D005327 ORTHO05D006655 1.1e-10 70.1 58 58.6
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 1.1e-10 70.1 58 58.6
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 3.1e-10 68.6 58 56.9
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 5.2e-10 67.8 58 55.2
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 5.2e-10 67.8 56 57.1
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 6.8e-10 67.4 59 55.9
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 1.2e-09 66.6 58 53.4
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 1.5e-09 66.2 58 53.4
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 2.0e-09 65.9 58 53.4
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 2.6e-09 65.5 58 51.7
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 2.6e-09 65.5 58 55.2
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 3.4e-09 65.1 58 55.2
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 3.4e-09 65.1 56 55.4
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 3.4e-09 65.1 58 56.9
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 4.4e-09 64.7 58 53.4
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 5.8e-09 64.3 58 51.7
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 7.6e-09 63.9 58 55.2
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 7.6e-09 63.9 58 53.4
Hma1.2p1_0022F.1_g014810 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 7.6e-09 63.9 58 51.7
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 7.6e-09 63.9 58 51.7
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 7.6e-09 63.9 58 56.9
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 9.9e-09 63.5 58 51.7
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 9.9e-09 63.5 56 55.4
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 9.9e-09 63.5 58 51.7
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 1.3e-08 63.2 56 53.6
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 1.7e-08 62.8 58 51.7
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 2.2e-08 62.4 58 48.3
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 2.2e-08 62.4 58 50.0
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 2.2e-08 62.4 58 50.0
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 2.9e-08 62.0 58 50.0
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 2.9e-08 62.0 58 50.0
PGR044G0615 Punica granatum HOM05D005327 ORTHO05D006655 2.9e-08 62.0 58 50.0
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 2.9e-08 62.0 58 48.3
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 2.9e-08 62.0 58 53.4
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 3.8e-08 61.6 66 50.0
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 3.8e-08 61.6 58 51.7
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 4.9e-08 61.2 56 55.4
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 4.9e-08 61.2 56 53.6
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 4.9e-08 61.2 57 52.6
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 6.4e-08 60.8 58 50.0
vmacro20791 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 6.4e-08 60.8 58 50.0
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 8.4e-08 60.5 57 54.4
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 8.4e-08 60.5 58 51.7
COL.COLO4_23452 Corchorus olitorius HOM05D005327 ORTHO05D006655 1.1e-07 60.1 58 48.3
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 1.4e-07 59.7 58 51.7
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 1.4e-07 59.7 58 55.2
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 1.9e-07 59.3 57 52.6
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 1.9e-07 59.3 57 52.6
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 1.9e-07 59.3 59 49.2
Gohir.A05G001832 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.9e-07 59.3 58 48.3
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 1.9e-07 59.3 58 44.8
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 1.9e-07 59.3 58 48.3
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 2.4e-07 58.9 56 51.8
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 2.4e-07 58.9 58 55.2
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 2.4e-07 58.9 58 55.2
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 2.4e-07 58.9 58 50.0
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 3.2e-07 58.5 57 50.9
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 4.2e-07 58.2 58 48.3
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 5.4e-07 57.8 57 52.6
FAN07G1666 Fragaria x ananassa HOM05D005327 ORTHO05D006655 7.1e-07 57.4 58 55.2
FAN22G1263 Fragaria x ananassa HOM05D005327 ORTHO05D006655 7.1e-07 57.4 58 55.2
Phvul.002G303800 Phaseolus vulgaris HOM05D005327 ORTHO05D006655 7.1e-07 57.4 58 46.6
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 9.3e-07 57.0 58 46.6
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 9.3e-07 57.0 58 50.0
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 1.2e-06 56.6 58 50.0
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 1.2e-06 56.6 58 44.8
Sed0024331 Sechium edule HOM05D005327 ORTHO05D006655 1.2e-06 56.6 58 50.0
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 2.1e-06 55.8 58 46.6
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 2.1e-06 55.8 58 51.7
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 2.1e-06 55.8 57 50.9
TPR.G25461 Trifolium pratense HOM05D005327 ORTHO05D006655 2.1e-06 55.8 62 46.8
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 2.7e-06 55.5 58 44.8
Sed0022639 Sechium edule HOM05D005327 ORTHO05D006655 4.6e-06 54.7 58 48.3
HPP92_000244 Vanilla planifolia HOM05D005327 ORTHO05D006655 7.8e-06 53.9 56 46.4


User provided reference genes

Program Settings