Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g031870.4 Solanum lycopersicum HOM05D000049 ORTHO05D048711 6.5e-20 99.8 50 100.0
Nitab4.5_0004947g0020 Nicotiana tabacum HOM05D000049 ORTHO05D000027 4.1e-14 80.5 48 85.4
CAN.G33.7 Capsicum annuum HOM05D000049 ORTHO05D000027 1.3e-12 75.5 39 97.4
CAN.G700.20 Capsicum annuum HOM05D000049 ORTHO05D000027 1.3e-12 75.5 39 97.4
Solyc07g014650.3 Solanum lycopersicum HOM05D000049 ORTHO05D000027 1.3e-12 75.5 39 97.4
Sopen07g005510 Solanum pennellii HOM05D000049 ORTHO05D000027 1.3e-12 75.5 39 97.4
Nitab4.5_0000053g0130 Nicotiana tabacum HOM05D000049 ORTHO05D000027 3.8e-12 73.9 39 94.9
Peaxi162Scf00889g00110 Petunia axillaris HOM05D000049 ORTHO05D000027 3.8e-12 73.9 39 94.9
Cc03_g11540 Coffea canephora HOM05D000049 ORTHO05D000027 1.4e-11 72.0 39 92.3
HanXRQChr09g0261491 Helianthus annuus HOM05D000049 ORTHO05D000027 1.4e-11 72.0 39 89.7
Hund20734 Selenicereus undatus HOM05D000049 ORTHO05D000027 1.4e-11 72.0 39 89.7
Atru.chr3.581 Acer truncatum HOM05D000049 ORTHO05D000027 1.9e-11 71.6 39 89.7
Eucgr.D02615 Eucalyptus grandis HOM05D000049 ORTHO05D000027 1.9e-11 71.6 39 89.7
Sc03g0002990 Simmondsia chinensis HOM05D000049 ORTHO05D000027 1.9e-11 71.6 39 89.7
Os02g0327100 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D000027 2.5e-11 71.2 39 87.2
Cpa.g.sc6.116 Carica papaya HOM05D000049 ORTHO05D000027 4.2e-11 70.5 39 89.7
Gohir.A02G165900 Gossypium hirsutum HOM05D000049 ORTHO05D000027 4.2e-11 70.5 39 89.7
Gohir.D03G014100 Gossypium hirsutum HOM05D000049 ORTHO05D000027 4.2e-11 70.5 39 89.7
Gorai.003G014400 Gossypium raimondii HOM05D000049 ORTHO05D000027 4.2e-11 70.5 39 89.7
Lsat_1_v5_gn_4_152040 Lactuca sativa HOM05D000049 ORTHO05D000027 4.2e-11 70.5 39 87.2
EL10Ac5g12252 Beta vulgaris HOM05D000049 ORTHO05D000015 5.5e-11 70.1 39 84.6
EL10Ac6g15558 Beta vulgaris HOM05D000049 ORTHO05D000027 5.5e-11 70.1 39 84.6
EL10Ac7g16258 Beta vulgaris HOM05D000049 ORTHO05D000027 5.5e-11 70.1 39 84.6
AUR62004056 Chenopodium quinoa HOM05D000049 ORTHO05D000027 5.5e-11 70.1 39 84.6
PGR119G0481 Punica granatum HOM05D000049 ORTHO05D000027 5.5e-11 70.1 39 87.2
Sopen09g026030 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-11 70.1 39 89.7
Lj4A201T51 Lonicera japonica HOM05D000049 ORTHO05D000027 7.2e-11 69.7 39 89.7
SEGI_00520 Sequoiadendron giganteum HOM05D000049 ORTHO05D000027 7.2e-11 69.7 39 87.2
TAR625G0429 Trochodendron aralioides HOM05D000049 ORTHO05D000027 7.2e-11 69.7 39 87.2
CSS0005450 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D000027 9.4e-11 69.3 39 87.2
COL.COLO4_24893 Corchorus olitorius HOM05D000049 ORTHO05D000027 9.4e-11 69.3 39 87.2
COL.COLO4_35758 Corchorus olitorius HOM05D003614 ORTHO05D004156 9.4e-11 69.3 39 87.2
Duzib187G0891 Durio zibethinus HOM05D000049 ORTHO05D000027 9.4e-11 69.3 39 87.2
Gohir.A11G184201 Gossypium hirsutum HOM05D000049 ORTHO05D000027 9.4e-11 69.3 39 87.2
Oeu042403.1 Olea europaea HOM05D000049 ORTHO05D000027 9.4e-11 69.3 39 87.2
SGA_v2.0_scaffold614G53204 Striga asiatica HOM05D000049 ORTHO05D000027 9.4e-11 69.3 39 87.2
Thecc.01G034800 Theobroma cacao HOM05D000049 ORTHO05D000027 9.4e-11 69.3 39 87.2
TPR.G24123 Trifolium pratense HOM05D000049 ORTHO05D000027 9.4e-11 69.3 39 87.2
Aqoxy5G01620 Aquilegia oxysepala HOM05D000049 ORTHO05D000027 1.2e-10 68.9 39 84.6
Ca_22270_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 1.2e-10 68.9 39 87.2
Ca_22283_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 1.2e-10 68.9 39 87.2
DCAR_017292 Daucus carota HOM05D000049 ORTHO05D000027 1.2e-10 68.9 39 87.2
GSVIVG01018953001 Vitis vinifera HOM05D000049 ORTHO05D000027 1.2e-10 68.9 39 87.2
arahy.Tifrunner.gnm1.ann1.4F14CM Arachis hypogaea HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 87.2
ClCG01G019550 Citrullus lanatus HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 87.2
ClCG01G019580 Citrullus lanatus HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 87.2
MELO3C007829.2 Cucumis melo HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 87.2
CsaV3_6G046260 Cucumis sativus L. HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 87.2
Glyma.01G176300 Glycine max HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 87.2
Glyma.11G068500 Glycine max HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 87.2
Medtr8g077540 Medicago truncatula HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 87.2
Sabra07G0021900 Salix brachista HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 84.6
VMungo1215G1137 Vigna mungo HOM05D000049 ORTHO05D000027 1.6e-10 68.6 39 87.2
Atru.chr12.876 Acer truncatum HOM05D000049 ORTHO05D000027 2.1e-10 68.2 39 84.6
Migut.H00987 Erythranthe guttata HOM05D000049 ORTHO05D000027 2.1e-10 68.2 39 87.2
Gohir.D11G190700 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.1e-10 68.2 39 84.6
Gorai.007G203200 Gossypium raimondii HOM05D000049 ORTHO05D000027 2.1e-10 68.2 39 84.6
arahy.Tifrunner.gnm1.ann1.RR0NEL Arachis hypogaea HOM05D000049 ORTHO05D000027 2.7e-10 67.8 39 87.2
AUR62007570 Chenopodium quinoa HOM05D000049 ORTHO05D000027 2.7e-10 67.8 39 82.1
Cfa004414 Carpinus fangiana HOM05D000049 ORTHO05D000027 3.6e-10 67.4 39 84.6
Cfa009642 Carpinus fangiana HOM05D000049 ORTHO05D000027 3.6e-10 67.4 39 84.6
Ciclev10032495m.g Citrus clementina HOM05D000049 ORTHO05D000027 3.6e-10 67.4 39 84.6
Phvul.002G030600 Phaseolus vulgaris HOM05D000049 ORTHO05D000027 3.6e-10 67.4 39 84.6
Potri.007G024800 Populus trichocarpa HOM05D000049 ORTHO05D000027 3.6e-10 67.4 39 84.6
QL06p046218 Quercus lobata HOM05D000049 ORTHO05D000027 3.6e-10 67.4 39 84.6
Zm00001eb052220 Zea mays HOM05D000049 ORTHO05D000027 3.6e-10 67.4 39 84.6
Lj1g0019429 Lotus japonicus HOM05D000049 ORTHO05D000027 4.7e-10 67.0 39 84.6
Lj3g0012089 Lotus japonicus HOM05D000049 ORTHO05D000027 4.7e-10 67.0 39 84.6
LjContig00448g0006848 Lotus japonicus HOM05D000049 ORTHO05D000027 4.7e-10 67.0 39 84.6
Rhsim08G0117800 Rhododendron simsii HOM05D000049 ORTHO05D000027 4.7e-10 67.0 39 84.6
TWI09G0572 Tripterygium wilfordii HOM05D000049 ORTHO05D000027 4.7e-10 67.0 39 82.1
CDE07G1378 Ceratophyllum demersum HOM05D000049 ORTHO05D000027 6.1e-10 66.6 39 84.6
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 6.1e-10 66.6 39 84.6
CiPaw.01G039600 Carya illinoinensis HOM05D000049 ORTHO05D000027 7.9e-10 66.2 39 82.1
Hma1.2p1_0400F.1_g144370 Hydrangea macrophylla HOM05D000049 ORTHO05D000027 7.9e-10 66.2 40 87.5
MD03G1270500 Malus domestica HOM05D000049 ORTHO05D000027 7.9e-10 66.2 39 82.1
PSO017G0329 Papaver somniferum HOM05D000049 ORTHO05D000027 7.9e-10 66.2 39 82.1
PSO675G6496 Papaver somniferum HOM05D000049 ORTHO05D000027 7.9e-10 66.2 39 82.1
Prupe.8G270100 Prunus persica HOM05D000049 ORTHO05D000027 7.9e-10 66.2 39 82.1
RcHm_v2.0_Chr7g0241851 Rosa chinensis HOM05D000049 ORTHO05D000027 7.9e-10 66.2 39 82.1
THA.LOC104819787 Tarenaya hassleriana HOM05D000049 ORTHO05D000027 7.9e-10 66.2 39 84.6
Nn1g04974 Nelumbo nucifera HOM05D000049 ORTHO05D000027 1.0e-09 65.9 39 84.6
TAR381G0235 Trochodendron aralioides HOM05D000049 ORTHO05D000027 1.0e-09 65.9 39 82.1
Psat4g092960 Pisum sativum HOM05D000049 ORTHO05D000027 1.4e-09 65.5 39 82.1
Aa31LG8G15640 Aethionema arabicum HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
BcaB03g16643 Brassica carinata HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
BcaC01g06894 Brassica carinata HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
BcaC06g36405 Brassica carinata HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
A06p33240 Brassica napus HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
A07p02350 Brassica napus HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
C03p59210 Brassica napus HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
C07p04470 Brassica napus HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
BolC3t18177H Brassica oleracea HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
BraA06t26255Z Brassica rapa HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
BraA07t28026Z Brassica rapa HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
CARHR108990 Cardamine hirsuta HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
Thhalv10022871m.g Eutrema salsugineum HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
FvH4_5g39540 Fragaria vesca HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
FAN08G3444 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
FAN13G2744 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
FAN18G4380 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.8e-09 65.1 39 79.5
AT2G18390 Arabidopsis thaliana HOM05D000049 ORTHO05D000027 2.3e-09 64.7 39 79.5
Carub.0003s3254 Capsella rubella HOM05D000049 ORTHO05D000027 2.3e-09 64.7 39 79.5
Lalb_Chr09g0333501 Lupinus albus HOM05D000049 ORTHO05D000027 2.3e-09 64.7 39 79.5
FAN04G0739 Fragaria x ananassa HOM05D000049 ORTHO05D000027 3.0e-09 64.3 39 79.5
Manes.02G099400 Manihot esculenta HOM05D000049 ORTHO05D000027 3.0e-09 64.3 39 79.5
QL02p021742 Quercus lobata HOM05D000049 ORTHO05D000027 3.0e-09 64.3 38 84.2
AL3G51670 Arabidopsis lyrata HOM05D000049 ORTHO05D000027 3.9e-09 63.9 39 76.9
Manes.03G072500 Manihot esculenta HOM05D000049 ORTHO05D011980 3.9e-09 63.9 39 79.5
Manes.06G000133 Manihot esculenta HOM05D000049 ORTHO05D011980 3.9e-09 63.9 39 79.5
Sp3g31800 Schrenkiella parvula HOM05D000049 ORTHO05D000027 3.9e-09 63.9 39 76.9
SpUn0030_0030 Schrenkiella parvula HOM05D000049 ORTHO05D000027 3.9e-09 63.9 39 76.9
CANSAT54G0966 Cannabis sativa HOM05D000049 ORTHO05D000027 8.8e-09 62.8 39 74.4
Manes.15G179612 Manihot esculenta HOM05D000049 ORTHO05D011980 8.8e-09 62.8 39 79.5
ATR0916G006 Amborella trichopoda HOM05D000049 ORTHO05D000027 2.0e-08 61.6 39 79.5
Manes.07G064200 Manihot esculenta HOM05D000049 ORTHO05D048711 2.0e-08 61.6 40 77.5
HPP92_027717 Vanilla planifolia HOM05D000049 ORTHO05D000027 2.0e-08 61.6 39 74.4
FAN07G0658 Fragaria x ananassa HOM05D000049 ORTHO05D000027 2.6e-08 61.2 39 76.9
FAN12G2068 Fragaria x ananassa HOM05D000049 ORTHO05D000027 2.6e-08 61.2 39 76.9
RcHm_v2.0_Chr7g0224231 Rosa chinensis HOM05D000049 ORTHO05D000027 2.6e-08 61.2 39 76.9
Prupe.5G036300 Prunus persica HOM05D000049 ORTHO05D000027 4.4e-08 60.5 39 79.5
AagrBONN_evm.TU.Sc2ySwM_228.5565 Anthoceros agrestis HOM05D000049 ORTHO05D000027 7.4e-08 59.7 39 74.4
FvH4_5g30040 Fragaria vesca HOM05D000049 ORTHO05D000027 7.4e-08 59.7 39 74.4
FAN18G1560 Fragaria x ananassa HOM05D000049 ORTHO05D000027 7.4e-08 59.7 39 74.4
Pp3c8_12060 Physcomitrium patens HOM05D000728 ORTHO05D001474 7.4e-08 59.7 39 69.2
FAN18G1672 Fragaria x ananassa HOM05D000049 ORTHO05D000027 9.7e-08 59.3 35 82.9
Mapoly0224s0005 Marchantia polymorpha HOM05D000049 ORTHO05D000027 9.7e-08 59.3 39 71.8
SHI22886 Sapria himalayana HOM05D000049 ORTHO05D000027 2.8e-07 57.8 39 71.8
FAN04G1908 Fragaria x ananassa HOM05D000049 ORTHO05D000027 8.2e-07 56.2 35 80.0
FAN13G2968 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.4e-06 55.5 35 80.0
SMO147G0423 Selaginella moellendorffii HOM05D000049 ORTHO05D000027 2.4e-06 54.7 39 69.2
vmacro17827 Vaccinium macrocarpon HOM05D000049 ORTHO05D000027 2.4e-06 54.7 60 55.0


User provided reference genes

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