Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 3.8e-102 374.8 180 100.0
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.0e-99 366.7 180 97.2
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 6.0e-92 340.9 183 90.2
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.2e-84 316.6 183 82.0
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.1e-81 305.8 171 83.0
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 1.3e-78 296.6 183 76.5
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.8e-75 286.2 177 74.0
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.8e-75 286.2 177 74.0
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.5e-74 283.1 179 70.4
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 7.4e-74 280.8 183 69.4
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 2.4e-72 275.8 185 68.6
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 4.1e-72 275.0 181 70.2
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 9.0e-72 273.9 183 66.1
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 5.9e-71 271.2 177 69.5
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 2.2e-70 269.2 183 68.3
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 2.2e-70 269.2 181 68.0
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 3.8e-70 268.5 183 68.3
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 5.0e-70 268.1 180 68.3
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 6.5e-70 267.7 180 65.0
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 8.5e-70 267.3 149 83.2
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.1e-69 266.9 179 67.6
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.1e-69 266.9 172 71.5
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.4e-69 266.5 183 68.3
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 2.5e-69 265.8 180 68.3
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 2.5e-69 265.8 181 65.7
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 4.2e-69 265.0 174 68.4
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 5.5e-69 264.6 182 65.9
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 5.5e-69 264.6 177 67.2
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 2.7e-68 262.3 185 63.8
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 3.6e-68 261.9 184 65.8
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 3.6e-68 261.9 178 68.0
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 4.6e-68 261.5 176 67.6
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 1.3e-67 260.0 177 68.4
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 1.3e-67 260.0 181 65.7
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 1.8e-67 259.6 181 65.2
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 3.0e-67 258.8 185 64.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 5.1e-67 258.1 185 64.9
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 5.1e-67 258.1 177 67.2
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 6.7e-67 257.7 180 66.7
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.1e-66 256.9 179 65.9
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 1.1e-66 256.9 183 65.6
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 1.1e-66 256.9 183 62.8
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 1.1e-66 256.9 179 65.4
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.5e-66 256.5 175 66.9
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.5e-66 256.5 180 64.4
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.5e-66 256.5 174 67.2
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 1.9e-66 256.1 184 64.7
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.9e-66 256.1 181 64.6
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.9e-66 256.1 178 65.7
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 3.3e-66 255.4 180 64.4
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 3.3e-66 255.4 185 61.6
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 4.3e-66 255.0 182 62.1
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 5.7e-66 254.6 180 65.0
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 9.7e-66 253.8 184 62.0
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 9.7e-66 253.8 178 65.7
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.3e-65 253.4 178 65.7
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.3e-65 253.4 188 63.8
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.3e-65 253.4 181 62.4
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.6e-65 253.1 185 63.2
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.8e-65 252.3 175 66.9
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 2.8e-65 252.3 175 66.3
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 3.7e-65 251.9 183 61.2
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 3.7e-65 251.9 169 66.9
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 3.7e-65 251.9 176 66.5
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 4.8e-65 251.5 178 64.0
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 4.8e-65 251.5 183 62.8
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 6.3e-65 251.1 182 61.0
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 8.2e-65 250.8 176 64.2
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.1e-64 250.4 171 65.5
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.1e-64 250.4 175 63.4
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 1.8e-64 249.6 178 64.6
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 2.4e-64 249.2 173 67.1
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 3.1e-64 248.8 178 64.0
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 3.1e-64 248.8 180 60.6
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 9.1e-64 247.3 176 63.6
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 2.0e-63 246.1 178 63.5
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.6e-63 245.7 173 64.2
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 3.4e-63 245.4 174 62.1
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 4.5e-63 245.0 172 65.1
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 4.5e-63 245.0 180 59.4
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 7.7e-63 244.2 178 62.9
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.9e-62 242.3 171 64.9
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.1e-61 240.4 165 65.5
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 2.1e-60 236.1 180 60.0
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 2.1e-60 236.1 180 60.0
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 3.0e-59 232.3 173 61.3
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 5.1e-59 231.5 173 58.4
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.1e-58 230.3 173 60.7
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 3.3e-58 228.8 176 59.7
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 9.7e-58 227.3 171 60.2
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 4.8e-57 224.9 168 60.7
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.1e-56 223.8 151 66.2
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.4e-56 223.4 155 65.2
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.8e-56 223.0 171 57.9
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 1.8e-56 223.0 156 64.7
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 9.1e-56 220.7 170 54.7
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 5.9e-55 218.0 164 60.4
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 7.7e-55 217.6 166 60.2
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.7e-54 216.5 152 64.5
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 8.5e-54 214.2 169 59.2
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 7.2e-53 211.1 169 58.6
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.8e-51 206.5 149 63.8
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 5.7e-50 201.4 172 56.4
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 7.4e-50 201.1 156 58.3
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.9e-45 186.4 175 48.6
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.0e-43 179.1 175 46.3
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 4.0e-43 178.7 179 46.9
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 5.7e-42 174.9 174 45.4
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.7e-41 172.2 129 58.1
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.0e-38 164.1 142 58.5
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 9.4e-37 157.5 123 56.1
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 4.4e-34 148.7 171 43.9
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 4.2e-29 132.1 131 51.9
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 5.0e-22 108.6 172 34.9
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 5.6e-21 105.1 75 62.7
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 7.5e-18 94.7 153 36.6
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 8.3e-17 91.3 189 34.9
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.0e-14 84.3 60 55.0
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.0e-14 84.3 97 45.4
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 9.2e-08 61.2 172 29.1
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.0e-07 60.1 171 28.7
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 2.7e-07 59.7 170 29.4
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 3.5e-07 59.3 170 29.4
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.5e-07 59.3 174 27.6
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 3.5e-07 59.3 173 27.7
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 3.5e-07 59.3 170 29.4
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 4.6e-07 58.9 171 29.8
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.0e-06 57.8 172 27.9
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.3e-06 57.4 174 28.2
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.3e-06 57.4 171 28.1
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 2.3e-06 56.6 172 27.9
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 3.0e-06 56.2 174 28.2
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 3.0e-06 56.2 171 26.9
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 3.9e-06 55.8 171 28.7
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 3.9e-06 55.8 177 27.1
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.0e-06 55.5 174 27.6
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.0e-06 55.5 174 27.6
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 5.0e-06 55.5 174 27.6
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 5.0e-06 55.5 173 28.3
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 5.0e-06 55.5 171 26.3
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 6.6e-06 55.1 169 29.0
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 6.6e-06 55.1 170 27.1
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 6.6e-06 55.1 172 27.3


User provided reference genes

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