Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 0.0e+00 2516.9 1354 100.0
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 0.0e+00 2430.2 1356 95.4
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 0.0e+00 1708.3 1057 85.7
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 0.0e+00 1672.9 1372 70.7
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 0.0e+00 1633.2 1412 64.9
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 0.0e+00 1335.9 1103 70.5
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 0.0e+00 1213.0 1040 68.5
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 2.7e-184 650.6 1604 37.7
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 2.7e-184 650.6 1604 37.7
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 2.7e-184 650.6 1604 37.7
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 1.7e-183 647.9 1706 37.8
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 4.1e-177 626.7 1474 39.9
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 2.4e-156 557.8 1445 38.0
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.4e-153 548.5 1529 36.4
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 2.7e-152 544.3 1586 36.5
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 1.7e-151 541.6 1404 37.0
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 1.3e-146 525.4 1598 34.6
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 3.3e-142 510.8 1506 37.0
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 5.3e-140 503.4 1586 34.9
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 6.4e-138 496.5 1403 36.4
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 1.9e-137 495.0 1549 33.9
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 7.4e-134 483.0 1498 36.5
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 6.9e-132 476.5 1495 34.4
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 2.9e-130 471.1 1459 34.6
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.9e-126 458.4 1450 35.3
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.6e-125 455.3 1742 33.0
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 1.8e-124 451.8 1507 35.6
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 6.9e-124 449.9 1446 35.8
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 3.4e-123 447.6 1415 34.9
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 6.5e-122 443.4 1535 33.4
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 1.6e-120 438.7 1568 35.1
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 1.6e-120 438.7 1428 33.8
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 2.7e-120 438.0 1592 34.9
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 2.7e-120 438.0 1378 37.3
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 3.0e-119 434.5 1477 33.6
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 1.1e-118 432.6 1415 35.9
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 3.7e-117 427.6 1470 33.9
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.1e-116 426.0 1439 33.6
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 1.1e-116 426.0 1421 34.1
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 3.1e-116 424.5 1566 34.0
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 4.5e-115 420.6 1461 33.7
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 5.9e-115 420.2 1429 32.9
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 2.2e-114 418.3 1535 33.5
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 2.9e-114 417.9 1474 31.9
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 3.8e-114 417.5 1470 32.6
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 3.8e-114 417.5 1515 33.7
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 1.6e-112 412.1 1490 34.5
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.1e-112 411.8 1487 32.5
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.4e-111 409.1 1756 32.1
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 3.0e-111 407.9 1487 31.4
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 6.7e-111 406.8 1787 31.6
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 6.3e-109 400.2 1502 34.6
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 5.3e-108 397.1 1476 32.2
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.0e-107 395.2 1491 32.3
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 7.7e-107 393.3 1441 35.9
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.9e-106 391.3 1690 33.6
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.4e-105 389.0 1432 35.7
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 2.7e-104 384.8 1508 32.8
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 1.4e-103 382.5 1553 33.8
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 8.8e-103 379.8 1493 30.2
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 2.6e-102 378.3 1482 32.6
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 7.0e-100 370.2 1415 34.6
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 7.2e-97 360.1 1150 32.0
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 1.2e-96 359.4 1453 33.4
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.1e-96 358.6 1424 33.4
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 3.0e-95 354.8 1481 31.2
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 8.8e-95 353.2 1459 31.7
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 7.5e-94 350.1 1396 33.9
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 7.5e-94 350.1 1429 34.7
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 1.4e-92 345.9 1486 33.6
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 5.7e-86 323.9 1449 31.2
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.1e-81 309.7 889 39.5
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 1.9e-81 308.9 1404 31.5
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 2.5e-81 308.5 1432 33.0
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 3.3e-81 308.1 1401 32.9
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 2.3e-79 302.0 1007 35.7
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 5.7e-78 297.4 1398 31.4
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 1.4e-76 292.7 1382 30.2
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 1.3e-74 286.2 1511 30.2
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 2.5e-73 282.0 1393 31.1
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.5e-70 272.7 1108 31.1
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 9.8e-70 270.0 697 44.3
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.9e-69 268.5 747 32.1
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.0e-67 262.3 226 57.5
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.3e-66 258.8 951 31.2
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 3.0e-66 258.5 1374 26.7
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 8.6e-66 256.9 712 43.3
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 4.7e-64 251.1 280 49.6
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 1.8e-63 249.2 1124 29.5
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 9.8e-62 243.4 1190 27.9
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 5.6e-57 227.6 235 52.3
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 7.3e-57 227.3 154 64.3
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 1.2e-56 226.5 1690 28.3
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 2.8e-56 225.3 1119 28.3
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.2e-54 219.9 140 66.4
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 1.9e-52 212.6 532 32.7
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 7.1e-52 210.7 1692 29.3
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.3e-50 206.5 1037 27.1
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 6.0e-43 181.0 169 53.3
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 3.9e-42 178.3 149 57.0
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 6.6e-42 177.6 355 35.8
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 7.3e-41 174.1 112 63.4
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.4e-39 169.1 388 36.3
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 5.2e-39 167.9 105 70.5
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 5.2e-39 167.9 431 33.6
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 6.9e-39 167.5 166 53.0
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 7.1e-36 157.5 718 29.8
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 5.1e-34 151.4 144 49.3
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.5e-33 149.8 481 31.2
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 1.4e-31 143.3 182 46.2
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 6.9e-31 141.0 105 60.0
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 1.4e-28 133.3 185 42.7
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 5.4e-28 131.3 108 57.4
Nitab4.5_0006476g0020 Nicotiana tabacum HOM05D005457 ORTHO05D006350 5.4e-28 131.3 80 76.2
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 1.6e-27 129.8 567 36.0
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 7.4e-25 120.9 85 61.2
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 7.4e-25 120.9 85 61.2
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 4.8e-24 118.2 127 52.8
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 2.2e-21 109.4 301 32.2
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 1.4e-20 106.7 230 36.1
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 4.3e-17 95.1 158 38.6
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 9.6e-17 94.0 136 31.6
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 6.2e-16 91.3 140 27.9
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.0e-14 86.3 94 46.8
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 1.0e-13 84.0 131 29.0
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.3e-13 83.6 44 93.2
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 2.2e-13 82.8 97 48.5
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 4.9e-13 81.6 97 37.1
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 4.9e-13 81.6 114 34.2
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 1.2e-11 77.0 96 35.4
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 7.4e-09 67.8 247 34.4
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 1.2e-06 60.5 317 26.2


User provided reference genes

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