Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 0.0e+00 1177.5 922 100.0
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 0.0e+00 1135.6 922 92.6
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.3e-296 1023.1 923 83.3
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 4.6e-220 768.8 824 70.9
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 4.6e-220 768.8 923 69.8
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 9.3e-213 744.6 923 63.6
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 2.1e-185 653.7 951 63.6
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.9e-96 358.2 954 51.3
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 9.0e-91 339.3 954 46.8
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.3e-86 325.5 934 48.1
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.3e-86 325.5 934 48.1
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 5.1e-86 323.6 939 51.0
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 9.0e-83 312.8 948 49.8
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.4e-82 310.8 979 45.5
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 3.8e-81 307.4 302 63.2
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.8e-78 298.5 834 52.0
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 2.5e-77 294.7 936 47.1
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 3.3e-77 294.3 957 47.9
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 4.3e-77 293.9 281 61.6
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 3.1e-75 287.7 225 72.0
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 3.1e-75 287.7 957 49.3
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 5.3e-75 287.0 245 65.3
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 6.9e-75 286.6 280 61.4
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 3.4e-74 284.3 1002 47.6
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 3.4e-74 284.3 246 65.4
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 7.6e-74 283.1 278 61.5
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 7.6e-74 283.1 278 60.1
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.7e-73 282.0 944 47.6
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.1e-72 279.3 940 46.0
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 5.5e-72 276.9 299 59.2
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 5.5e-72 276.9 989 46.6
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 7.1e-72 276.6 229 69.4
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 2.7e-71 274.6 934 49.9
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 3.0e-70 271.2 245 62.4
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 3.9e-70 270.8 282 59.2
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 3.9e-70 270.8 277 58.8
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.1e-69 269.2 297 56.2
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 7.4e-69 266.5 282 58.9
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.3e-68 265.8 994 43.4
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 8.2e-68 263.1 282 58.2
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.4e-67 261.5 266 59.4
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 3.1e-67 261.2 278 56.8
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 4.1e-67 260.8 941 47.3
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 4.1e-67 260.8 240 65.4
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 5.3e-67 260.4 222 64.9
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 6.9e-67 260.0 962 48.3
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 2.0e-66 258.5 947 44.5
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 3.4e-66 257.7 954 48.5
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 4.5e-66 257.3 951 47.0
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 5.9e-66 256.9 300 56.3
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 3.8e-65 254.2 207 65.2
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 6.5e-65 253.4 995 47.6
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.4e-64 252.3 291 56.7
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.4e-64 252.3 297 53.2
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 2.5e-64 251.5 961 48.6
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 3.2e-64 251.1 994 42.0
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 3.2e-64 251.1 257 59.5
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 4.2e-64 250.8 325 52.3
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 5.5e-64 250.4 238 63.0
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 5.5e-64 250.4 978 45.3
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.1e-63 248.4 952 46.7
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 2.7e-63 248.1 278 57.2
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 3.5e-63 247.7 163 79.8
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 4.6e-63 247.3 277 57.8
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.0e-62 246.1 950 44.3
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.8e-62 245.4 243 62.6
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.8e-62 245.4 271 56.8
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.9e-61 241.9 164 78.7
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 4.3e-61 240.7 941 44.0
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 9.7e-61 239.6 281 55.9
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.3e-60 239.2 870 42.4
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.2e-60 238.4 952 46.7
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 2.8e-60 238.0 290 55.2
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.4e-59 235.7 222 61.7
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 5.3e-59 233.8 243 59.3
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 6.9e-59 233.4 963 44.4
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 9.0e-59 233.0 960 48.0
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.5e-58 232.3 990 41.4
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 5.9e-58 230.3 959 48.8
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.3e-57 229.2 283 54.8
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 2.2e-57 228.4 943 46.6
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 3.8e-57 227.6 227 62.6
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.1e-56 226.1 928 47.2
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 3.2e-56 224.6 213 61.0
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 1.6e-55 222.2 288 52.1
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.0e-54 219.5 146 76.7
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.4e-54 219.2 142 78.2
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.8e-54 218.8 234 57.7
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 2.3e-54 218.4 214 61.2
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 5.1e-54 217.2 242 53.7
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 5.1e-54 217.2 242 53.7
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 6.7e-54 216.9 136 79.4
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 3.3e-53 214.5 254 51.2
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 4.3e-53 214.2 929 47.5
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 7.4e-53 213.4 299 50.2
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 9.7e-53 213.0 282 49.3
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 1.7e-52 212.2 157 71.3
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 2.8e-52 211.5 157 71.3
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.7e-52 211.1 982 40.1
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 2.4e-51 208.4 292 49.0
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 2.4e-51 208.4 940 43.0
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 3.1e-51 208.0 162 66.7
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 9.1e-51 206.5 940 47.7
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.0e-50 205.3 131 77.1
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 7.7e-50 203.4 268 51.5
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 3.2e-48 198.0 166 63.3
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 9.4e-48 196.4 936 39.7
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 3.6e-47 194.5 171 60.8
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 1.8e-46 192.2 285 51.2
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 3.0e-46 191.4 863 44.8
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 1.1e-45 189.5 134 70.9
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.3e-44 186.0 931 48.9
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 4.1e-43 181.0 283 47.3
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 2.2e-41 175.3 224 52.7
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.9e-40 172.2 134 69.4
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 7.5e-37 160.2 831 46.3
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 2.2e-36 158.7 212 46.7
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 2.7e-31 141.7 124 58.9
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.5e-29 136.0 131 58.8
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 7.5e-29 133.7 182 46.7
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 6.3e-28 130.6 142 52.1
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 4.0e-22 111.3 150 46.7
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 4.9e-20 104.4 146 43.2
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 3.8e-17 94.7 84 64.3
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.6e-15 89.4 83 62.7
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 4.4e-13 81.3 57 70.2
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 7.0e-11 73.9 352 35.8
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 3.5e-10 71.6 310 39.4
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 5.0e-09 67.8 50 70.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 2.1e-07 62.4 108 33.3
SalBow6G2010 Salvia bowleyana HOM05D005166 ORTHO05D006120 5.2e-06 57.8 436 36.2


User provided reference genes

Program Settings