Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 2.1e-294 1015.0 538 100.0
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 3.6e-265 917.9 490 96.3
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 1.1e-218 763.5 495 80.0
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 1.1e-216 756.9 495 80.2
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 6.4e-206 721.1 492 77.0
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.1e-154 550.8 323 92.6
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 1.7e-150 537.0 505 57.0
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 5.5e-149 531.9 494 56.1
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 6.3e-145 518.5 493 56.6
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 9.1e-144 514.6 494 56.1
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 1.5e-143 513.8 492 54.9
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 2.2e-142 510.0 492 55.9
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 3.2e-141 506.1 493 55.6
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 7.2e-141 505.0 496 54.2
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 9.4e-141 504.6 496 54.2
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 9.4e-141 504.6 513 53.8
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 2.7e-140 503.1 497 54.9
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 6.7e-139 498.4 496 54.0
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 6.7e-139 498.4 496 54.0
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 8.8e-139 498.0 494 54.9
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 2.6e-135 486.5 467 55.5
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 2.2e-134 483.4 433 55.4
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 1.5e-133 480.7 493 53.1
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 3.2e-133 479.6 495 52.9
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 1.2e-132 477.6 493 51.1
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 1.2e-132 477.6 494 52.4
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 1.6e-132 477.2 494 52.6
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 1.4e-131 474.2 494 50.8
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.4e-131 474.2 493 50.7
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 4.0e-131 472.6 492 52.8
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 3.4e-130 469.5 495 49.3
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 5.7e-130 468.8 492 50.4
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 6.3e-129 465.3 497 50.9
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 8.3e-129 464.9 498 52.0
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 8.3e-129 464.9 493 52.5
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 1.1e-128 464.5 501 51.3
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 1.4e-128 464.2 492 49.8
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 1.8e-128 463.8 494 49.4
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 5.4e-128 462.2 492 49.2
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 7.0e-128 461.8 496 50.2
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 2.0e-127 460.3 418 54.1
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 7.7e-127 458.4 489 48.3
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 1.3e-126 457.6 494 49.6
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 1.7e-126 457.2 493 48.9
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 2.9e-126 456.4 491 50.5
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 3.2e-125 453.0 496 50.8
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 7.2e-125 451.8 534 49.6
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 9.4e-125 451.4 494 47.6
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 1.8e-123 447.2 496 50.6
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 1.8e-123 447.2 493 49.5
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 3.0e-123 446.4 497 50.3
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 5.2e-123 445.7 498 48.6
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 2.8e-121 439.9 493 49.1
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 9.1e-120 434.9 498 48.0
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 1.2e-119 434.5 493 48.3
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 3.5e-119 433.0 498 48.0
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 5.9e-119 432.2 495 48.7
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 5.9e-119 432.2 496 50.0
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 7.7e-119 431.8 492 48.8
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 2.3e-118 430.3 498 48.8
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 3.8e-118 429.5 492 48.4
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 3.8e-118 429.5 494 47.4
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 1.1e-117 427.9 492 48.8
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.1e-117 427.9 497 47.9
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 3.3e-117 426.4 504 47.4
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 4.2e-117 426.0 496 47.8
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 1.6e-116 424.1 499 48.5
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 2.1e-116 423.7 494 48.4
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 6.1e-116 422.2 493 48.1
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 3.0e-115 419.9 496 48.4
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 5.2e-115 419.1 501 48.3
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 6.8e-115 418.7 498 48.2
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 2.6e-114 416.8 494 46.4
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 4.4e-114 416.0 495 48.3
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 5.7e-114 415.6 494 47.8
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 9.8e-114 414.8 495 48.7
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 6.3e-113 412.1 494 44.7
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 2.4e-112 410.2 498 47.6
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 5.4e-112 409.1 497 46.3
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 5.4e-112 409.1 494 46.4
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 7.0e-112 408.7 491 47.3
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 9.2e-112 408.3 491 47.5
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 1.7e-110 404.1 493 46.7
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 3.9e-110 402.9 494 46.4
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 6.6e-110 402.1 491 43.4
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 2.1e-108 397.1 496 44.6
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 3.6e-108 396.4 495 45.5
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 6.2e-108 395.6 503 45.3
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.8e-107 394.0 496 45.2
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 6.8e-107 392.1 493 45.6
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 8.9e-107 391.7 346 55.2
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 2.4e-104 383.6 497 47.1
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 4.6e-103 379.4 494 43.7
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 8.9e-99 365.2 373 53.1
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 2.9e-97 360.1 495 42.4
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 4.6e-95 352.8 475 44.8
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 6.0e-95 352.4 493 42.2
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 1.4e-91 341.3 378 48.4
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 8.9e-91 338.6 390 47.2
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 1.6e-87 327.8 503 38.8
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 6.6e-86 322.4 326 54.9
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 4.0e-83 313.2 336 47.0
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 2.7e-79 300.4 271 55.4
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 2.4e-64 250.8 180 65.6
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 2.4e-64 250.8 180 65.6
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 9.3e-64 248.8 219 56.2
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 6.2e-60 236.1 545 33.0
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 4.2e-56 223.4 217 50.2
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 3.0e-54 217.2 402 33.3
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 3.3e-53 213.8 115 94.8
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 1.8e-51 208.0 509 30.3
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 6.7e-46 189.5 402 30.8
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 8.2e-36 156.0 203 38.4
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 3.3e-29 134.0 116 60.3
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 4.4e-29 133.7 174 46.6
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 9.7e-29 132.5 174 46.0
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 3.8e-25 120.6 116 50.0
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 1.1e-24 119.0 142 43.7
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 2.1e-23 114.8 142 43.0
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 7.0e-19 99.8 122 43.4
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 3.2e-16 90.9 174 31.0
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 1.2e-15 89.0 116 47.4
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 4.0e-14 84.0 224 28.6


User provided reference genes

Program Settings