Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 4.4e-186 655.2 551 100.0
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 1.7e-182 643.3 551 99.3
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 2.7e-90 337.0 260 72.3
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 3.6e-87 326.6 617 51.4
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 9.2e-83 312.0 551 63.9
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 3.6e-39 167.2 270 44.1
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 3.1e-38 164.1 257 42.8
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 9.0e-38 162.5 265 43.0
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 3.0e-33 147.5 275 40.7
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 9.6e-32 142.5 257 41.2
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 1.3e-31 142.1 268 39.6
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 8.1e-31 139.4 269 38.7
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 1.1e-30 139.0 270 37.0
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 1.1e-30 139.0 267 37.8
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 1.1e-30 139.0 260 40.0
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 2.4e-30 137.9 272 36.0
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 2.4e-30 137.9 263 39.9
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 4.0e-30 137.1 272 39.0
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 1.2e-29 135.6 266 40.2
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 2.0e-29 134.8 250 39.6
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 2.0e-29 134.8 277 38.3
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 4.5e-29 133.7 270 38.5
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 1.7e-28 131.7 286 39.2
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 2.2e-28 131.3 283 38.9
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 2.2e-28 131.3 257 40.9
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 2.9e-28 131.0 267 37.1
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 3.8e-28 130.6 270 37.4
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 3.8e-28 130.6 261 37.9
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 4.9e-28 130.2 261 38.7
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 1.9e-27 128.3 265 38.1
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 2.4e-27 127.9 266 40.2
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 2.4e-27 127.9 268 39.2
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 3.2e-27 127.5 262 38.9
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 4.2e-27 127.1 275 37.5
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 5.5e-27 126.7 289 37.4
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 7.1e-27 126.3 269 38.7
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 7.1e-27 126.3 266 39.8
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 7.1e-27 126.3 266 39.8
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 1.6e-26 125.2 245 38.8
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 6.0e-26 123.2 274 36.5
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 1.8e-25 121.7 331 35.0
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 8.7e-25 119.4 271 37.6
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 1.1e-24 119.0 219 41.6
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 1.1e-24 119.0 259 38.2
Nitab4.5_0000048g0190 Nicotiana tabacum HOM05D006830 ORTHO05D008119 5.6e-24 116.7 105 68.6
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 7.4e-24 116.3 266 36.1
PGSC0003DMG400004043 Solanum tuberosum HOM05D006830 ORTHO05D008119 7.4e-24 116.3 70 87.1
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 9.6e-24 115.9 212 41.0
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 1.3e-23 115.5 272 37.1
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 1.6e-23 115.2 242 36.8
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 2.1e-23 114.8 263 36.9
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 3.7e-23 114.0 256 38.7
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 6.2e-23 113.2 269 37.9
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 8.2e-23 112.8 272 36.0
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 3.1e-22 110.9 260 37.7
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 1.2e-21 109.0 212 40.1
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 1.5e-21 108.6 242 36.0
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 2.0e-21 108.2 243 36.2
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 2.6e-21 107.8 212 40.1
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 4.5e-21 107.1 237 38.8
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 4.5e-21 107.1 234 36.3
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 1.7e-20 105.1 256 35.5
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 2.2e-20 104.8 265 34.3
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 4.9e-20 103.6 203 39.4
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 1.1e-19 102.4 271 33.9
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 2.5e-19 101.3 263 33.8
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 3.2e-19 100.9 210 39.5
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 7.1e-19 99.8 264 33.3
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 7.1e-19 99.8 280 32.9
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 9.3e-19 99.4 265 34.0
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 2.7e-18 97.8 263 33.5
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 2.7e-18 97.8 237 35.0
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 6.0e-18 96.7 228 36.0
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 7.9e-18 96.3 265 32.8
PSO384G2539 Papaver somniferum HOM05D006830 ORTHO05D008119 3.0e-17 94.4 262 30.5
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 8.7e-17 92.8 201 38.8
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 3.3e-16 90.9 265 32.1
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 4.3e-16 90.5 262 34.4
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 2.8e-15 87.8 189 39.2
unitig_22.g6617 Utricularia gibba HOM05D006830 ORTHO05D008119 3.7e-15 87.4 261 35.2
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 8.2e-15 86.3 207 35.7
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 8.2e-15 86.3 198 35.4
ClCG10G022820 Citrullus lanatus HOM05D006830 ORTHO05D008119 1.1e-14 85.9 290 31.7
Sed0004389 Sechium edule HOM05D006830 ORTHO05D008119 1.5e-13 82.0 197 37.1
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 2.6e-13 81.3 99 49.5
CDE04G1359 Ceratophyllum demersum HOM05D006830 ORTHO05D008119 3.4e-13 80.9 270 30.0
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 1.7e-12 78.6 264 29.5
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 2.2e-12 78.2 264 29.5
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 2.9e-12 77.8 264 29.5
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 2.9e-12 77.8 264 29.5
CSS0030660 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 1.1e-11 75.9 209 30.6
AL4G35860 Arabidopsis lyrata HOM05D006830 ORTHO05D008119 4.2e-11 73.9 199 32.7
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 5.5e-11 73.6 68 63.2
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 5.5e-11 73.6 68 63.2
AT2G38580 Arabidopsis thaliana HOM05D006830 ORTHO05D008119 7.2e-11 73.2 199 32.2
BcaB01g03674 Brassica carinata HOM05D006830 ORTHO05D008119 6.7e-09 66.6 197 31.5
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 2.0e-08 65.1 257 28.0
CARHR133260 Cardamine hirsuta HOM05D006830 ORTHO05D008119 2.5e-08 64.7 203 32.5
Lsat_1_v5_gn_5_151701 Lactuca sativa HOM05D006830 ORTHO05D008119 4.3e-08 63.9 70 57.1
Zm00001eb015900 Zea mays HOM05D006830 ORTHO05D008119 1.3e-07 62.4 62 56.5
C03p25310 Brassica napus HOM05D006830 ORTHO05D008119 2.8e-07 61.2 208 30.3
Os03g0333000 Oryza sativa ssp. japonica HOM05D006830 ORTHO05D008119 4.8e-07 60.5 124 37.9
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 8.2e-07 59.7 62 53.2
HPP92_012572 Vanilla planifolia HOM05D006830 ORTHO05D008119 8.2e-07 59.7 250 30.4
Aa31LG5G23390 Aethionema arabicum HOM05D006830 ORTHO05D008119 5.3e-06 57.0 92 40.2


User provided reference genes

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