Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g015630.2 Solanum lycopersicum HOM05D004057 ORTHO05D392767 2.3e-87 325.5 158 100.0
Sopen12g025030 Solanum pennellii HOM05D004057 ORTHO05D004805 5.3e-60 234.6 180 72.8
Solyc03g095750.2 Solanum lycopersicum HOM05D004057 ORTHO05D004805 9.1e-44 180.6 148 68.2
Sopen02g019240 Solanum pennellii HOM05D000018 ORTHO05D000453 2.2e-37 159.5 102 78.4
Sopen04g007250 Solanum pennellii HOM05D004057 ORTHO05D004805 4.7e-24 115.2 62 91.9
Solyc11g012850.2 Solanum lycopersicum HOM05D004057 ORTHO05D004805 1.9e-12 76.6 255 30.6
Sopen11g007590 Solanum pennellii HOM05D004057 ORTHO05D004805 1.9e-12 76.6 255 30.6
PGSC0003DMG402000895 Solanum tuberosum HOM05D004057 ORTHO05D004805 1.9e-12 76.6 255 30.6
Nitab4.5_0001996g0080 Nicotiana tabacum HOM05D004057 ORTHO05D004805 5.4e-12 75.1 255 30.6
Nitab4.5_0001803g0050 Nicotiana tabacum HOM05D004057 ORTHO05D004805 1.2e-11 73.9 255 30.6
CSS0049616 Camellia sinensis var. sinensis HOM05D004057 ORTHO05D004805 4.6e-11 72.0 137 38.0
Nitab4.5_0000322g0180 Nicotiana tabacum HOM05D004057 ORTHO05D004805 1.0e-10 70.9 138 38.4
CAN.G1040.4 Capsicum annuum HOM05D004057 ORTHO05D004805 1.7e-10 70.1 138 38.4
Nitab4.5_0003719g0050 Nicotiana tabacum HOM05D004057 ORTHO05D004805 1.7e-10 70.1 138 38.4
Solyc06g060310.3 Solanum lycopersicum HOM05D004057 ORTHO05D004805 1.7e-10 70.1 138 38.4
Sopen06g020430 Solanum pennellii HOM05D004057 ORTHO05D004805 1.7e-10 70.1 138 38.4
PGSC0003DMG400017570 Solanum tuberosum HOM05D004057 ORTHO05D004805 2.3e-10 69.7 138 38.4
Peaxi162Scf00051g01011 Petunia axillaris HOM05D004057 ORTHO05D004805 5.1e-10 68.6 138 36.2
ClCG08G005680 Citrullus lanatus HOM05D004057 ORTHO05D004805 8.6e-10 67.8 254 28.3
HanXRQChr04g0111611 Helianthus annuus HOM05D004057 ORTHO05D004805 8.6e-10 67.8 138 37.0
Rhsim06G0103100 Rhododendron simsii HOM05D004057 ORTHO05D004805 8.6e-10 67.8 253 28.1
ECA247G1991 Erigeron canadensis HOM05D004057 ORTHO05D004805 1.1e-09 67.4 138 37.0
PGR042G0804 Punica granatum HOM05D004057 ORTHO05D004805 1.5e-09 67.0 137 37.2
TAR376G1135 Trochodendron aralioides HOM05D004057 ORTHO05D004805 1.9e-09 66.6 136 36.0
GSVIVG01008862001 Vitis vinifera HOM05D004057 ORTHO05D004805 1.9e-09 66.6 251 28.3
MELO3C010614.2 Cucumis melo HOM05D004057 ORTHO05D004805 2.5e-09 66.2 254 28.0
Aqoxy6G00221 Aquilegia oxysepala HOM05D004057 ORTHO05D004805 3.3e-09 65.9 135 37.0
Cc10_g11980 Coffea canephora HOM05D004057 ORTHO05D004805 4.3e-09 65.5 137 35.0
CsaV3_6G034450 Cucumis sativus L. HOM05D004057 ORTHO05D004805 4.3e-09 65.5 253 28.1
Actinidia21326 Actinidia chinensis HOM05D004057 ORTHO05D004805 5.6e-09 65.1 136 36.0
Manes.02G163700 Manihot esculenta HOM05D004057 ORTHO05D004805 5.6e-09 65.1 137 34.3
Potri.005G178300 Populus trichocarpa HOM05D004057 ORTHO05D004805 5.6e-09 65.1 254 27.2
Eucgr.F03791 Eucalyptus grandis HOM05D004057 ORTHO05D004805 9.5e-09 64.3 137 35.0
Sed0018002 Sechium edule HOM05D004057 ORTHO05D004805 9.5e-09 64.3 136 36.8
Thecc.08G125900 Theobroma cacao HOM05D004057 ORTHO05D004805 9.5e-09 64.3 254 27.6
HanXRQChr11g0325991 Helianthus annuus HOM05D004057 ORTHO05D004805 1.2e-08 63.9 138 35.5
Lj1g0001948 Lotus japonicus HOM05D004057 ORTHO05D004805 1.2e-08 63.9 134 35.1
QL09p034469 Quercus lobata HOM05D004057 ORTHO05D004805 1.2e-08 63.9 136 36.0
TWI60G0519 Tripterygium wilfordii HOM05D004057 ORTHO05D004805 1.2e-08 63.9 255 27.5
Atru.chr13.1487 Acer truncatum HOM05D004057 ORTHO05D004805 1.6e-08 63.5 137 33.6
CAN.G1040.2 Capsicum annuum HOM05D004057 ORTHO05D004805 1.6e-08 63.5 137 37.2
Gohir.A05G235300 Gossypium hirsutum HOM05D004057 ORTHO05D004805 2.1e-08 63.2 254 26.4
Gorai.005G089400 Gossypium raimondii HOM05D004057 ORTHO05D004805 2.1e-08 63.2 137 33.6
Oeu026153.2 Olea europaea HOM05D004057 ORTHO05D004805 2.1e-08 63.2 137 33.6
Gohir.A02G072900 Gossypium hirsutum HOM05D004057 ORTHO05D004805 2.8e-08 62.8 137 33.6
Gohir.D02G080100 Gossypium hirsutum HOM05D004057 ORTHO05D004805 2.8e-08 62.8 137 33.6
TAR628G0371 Trochodendron aralioides HOM05D004057 ORTHO05D004805 2.8e-08 62.8 136 34.6
Nn5g28304 Nelumbo nucifera HOM05D004057 ORTHO05D004805 3.6e-08 62.4 136 33.8
CiPaw.05G221100 Carya illinoinensis HOM05D004057 ORTHO05D004805 6.2e-08 61.6 137 35.0
Gohir.D05G237600 Gossypium hirsutum HOM05D004057 ORTHO05D004805 6.2e-08 61.6 254 26.4
Gorai.009G246000 Gossypium raimondii HOM05D004057 ORTHO05D004805 6.2e-08 61.6 254 26.4
EL10Ac1g01020 Beta vulgaris HOM05D004057 ORTHO05D004805 8.1e-08 61.2 136 35.3
Lj7A342T52 Lonicera japonica HOM05D004057 ORTHO05D004805 8.1e-08 61.2 136 35.3
MBI16_g07661_MAGBIO Magnolia biondii HOM05D004057 ORTHO05D004805 8.1e-08 61.2 137 32.8
AUR62019074 Chenopodium quinoa HOM05D004057 ORTHO05D004805 1.1e-07 60.8 138 34.8
Lj4A628G54 Lonicera japonica HOM05D004057 ORTHO05D004805 1.1e-07 60.8 136 34.6
Oeu040414.2 Olea europaea HOM05D004057 ORTHO05D004805 1.1e-07 60.8 137 33.6
Os10g0567400 Oryza sativa ssp. japonica HOM05D004057 ORTHO05D004805 1.1e-07 60.8 136 34.6
DCAR_014388 Daucus carota HOM05D004057 ORTHO05D004805 1.8e-07 60.1 134 32.8
Ah.05g171070 Amaranthus hybridus HOM05D004057 ORTHO05D004805 2.3e-07 59.7 138 35.5
Hma1.2p1_0129F.1_g060250 Hydrangea macrophylla HOM05D004057 ORTHO05D004805 2.3e-07 59.7 137 34.3
Psat6g041720 Pisum sativum HOM05D004057 ORTHO05D004805 2.3e-07 59.7 136 33.8
Potri.002G083200 Populus trichocarpa HOM05D004057 ORTHO05D004805 3.1e-07 59.3 137 32.8
AUR62014331 Chenopodium quinoa HOM05D004057 ORTHO05D004805 4.0e-07 58.9 138 34.8
Oeu028564.1 Olea europaea HOM05D004057 ORTHO05D004805 4.0e-07 58.9 159 31.4
THA.LOC104817365 Tarenaya hassleriana HOM05D004057 ORTHO05D004805 4.0e-07 58.9 138 34.8
CiPaw.06G031400 Carya illinoinensis HOM05D004057 ORTHO05D004805 5.2e-07 58.5 137 33.6
Haze_00436 Corylus avellana HOM05D004057 ORTHO05D004805 5.2e-07 58.5 254 27.2
SalBow6G4711 Salvia bowleyana HOM05D004057 ORTHO05D004805 5.2e-07 58.5 137 33.6
Cpa.g.sc64.91 Carica papaya HOM05D004057 ORTHO05D004805 6.8e-07 58.2 137 32.1
RcHm_v2.0_Chr6g0295881 Rosa chinensis HOM05D004057 ORTHO05D004805 6.8e-07 58.2 136 34.6
FvH4_2g27000 Fragaria vesca HOM05D004057 ORTHO05D004805 8.9e-07 57.8 136 33.8
FAN15G2848 Fragaria x ananassa HOM05D004057 ORTHO05D004805 8.9e-07 57.8 136 33.8
FAN20G2710 Fragaria x ananassa HOM05D004057 ORTHO05D004805 8.9e-07 57.8 136 33.8
FAN24G3123 Fragaria x ananassa HOM05D004057 ORTHO05D004805 8.9e-07 57.8 136 33.8
Prupe.1G495400 Prunus persica HOM05D004057 ORTHO05D004805 8.9e-07 57.8 137 32.8
Medtr1g030480 Medicago truncatula HOM05D004057 ORTHO05D004805 1.2e-06 57.4 134 32.1
Aa31LG6G9340 Aethionema arabicum HOM05D004057 ORTHO05D004805 2.0e-06 56.6 138 34.1
Ciclev10000821m.g Citrus clementina HOM05D004057 ORTHO05D004805 2.0e-06 56.6 135 32.6
MD15G1347600 Malus domestica HOM05D004057 ORTHO05D004805 2.0e-06 56.6 137 32.8
CARHR035930 Cardamine hirsuta HOM05D004057 ORTHO05D004805 2.6e-06 56.2 134 33.6
FAN27G1712 Fragaria x ananassa HOM05D004057 ORTHO05D004805 2.6e-06 56.2 136 33.1
MD08G1162200 Malus domestica HOM05D004057 ORTHO05D004805 2.6e-06 56.2 137 32.1
Carub.0001s3519 Capsella rubella HOM05D004057 ORTHO05D004805 3.4e-06 55.8 134 32.8
AL1G52310 Arabidopsis lyrata HOM05D004057 ORTHO05D004805 5.8e-06 55.1 134 32.8
BcaB04g17588 Brassica carinata HOM05D004057 ORTHO05D004805 5.8e-06 55.1 136 33.1
Thhalv10011377m.g Eutrema salsugineum HOM05D004057 ORTHO05D004805 5.8e-06 55.1 134 32.8
Lsat_1_v5_gn_1_8361 Lactuca sativa HOM05D004057 ORTHO05D004805 7.6e-06 54.7 115 34.8
Sp1g33540 Schrenkiella parvula HOM05D004057 ORTHO05D004805 7.6e-06 54.7 134 32.8
BcaC07g37298 Brassica carinata HOM05D004057 ORTHO05D004805 9.9e-06 54.3 134 32.8
C08p07320 Brassica napus HOM05D004057 ORTHO05D004805 9.9e-06 54.3 134 32.8
BolC8t47573H Brassica oleracea HOM05D004057 ORTHO05D004805 9.9e-06 54.3 134 32.8


User provided reference genes

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