Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.2e-191 672.5 443 100.0
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 6.0e-181 637.9 443 96.4
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 9.6e-171 604.0 442 91.9
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.0e-128 463.4 438 75.1
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.4e-128 462.6 442 74.7
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 2.0e-96 357.1 477 60.8
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 8.1e-61 238.8 258 53.9
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 4.0e-60 236.5 264 52.7
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.7e-50 204.5 235 49.8
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 9.3e-49 198.7 265 47.2
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 7.8e-48 195.7 217 53.0
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.7e-47 194.5 231 44.6
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.7e-47 194.5 260 46.2
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 6.6e-47 192.6 267 46.4
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 2.8e-45 187.2 251 44.6
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 8.1e-45 185.7 263 43.3
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 1.4e-44 184.9 211 49.3
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 3.4e-43 180.3 258 44.6
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.7e-42 177.9 223 46.6
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.7e-42 177.9 230 45.2
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 2.9e-42 177.2 253 44.3
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.4e-41 174.9 255 42.4
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 3.2e-41 173.7 214 47.2
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 5.4e-41 172.9 254 43.3
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 5.4e-41 172.9 212 43.4
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 7.1e-41 172.6 275 43.3
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 9.3e-41 172.2 264 42.4
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 2.7e-40 170.6 219 46.6
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 3.5e-40 170.2 221 44.3
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 7.9e-40 169.1 254 44.5
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.0e-39 168.7 184 50.0
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.3e-39 168.3 257 43.6
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 2.3e-39 167.5 257 43.2
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.3e-39 167.5 251 44.6
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.3e-39 167.5 251 44.6
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.3e-39 167.5 251 44.6
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 2.3e-39 167.5 272 41.5
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 3.0e-39 167.2 143 60.1
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.7e-39 165.6 260 43.8
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.3e-38 163.7 187 52.4
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 3.3e-38 163.7 265 40.4
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.3e-37 161.8 237 44.7
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 2.1e-37 161.0 225 47.1
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.8e-37 160.6 253 38.7
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.7e-37 160.2 235 40.4
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.7e-37 160.2 235 40.4
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 4.8e-37 159.8 242 41.7
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.4e-36 158.3 213 44.1
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.4e-36 157.5 213 44.1
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 9.0e-36 155.6 255 41.6
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 1.5e-35 154.8 178 50.0
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 7.6e-35 152.5 207 45.4
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 7.6e-35 152.5 239 40.6
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.2e-34 151.0 269 38.3
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 2.9e-34 150.6 235 42.6
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 2.9e-34 150.6 239 41.0
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 3.8e-34 150.2 249 40.2
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.1e-33 148.7 219 42.9
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.1e-33 148.7 209 43.1
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 1.4e-33 148.3 269 39.0
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.5e-33 147.5 265 37.7
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 3.2e-33 147.1 259 39.8
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 9.3e-33 145.6 212 44.8
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 9.3e-33 145.6 246 36.6
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 1.6e-32 144.8 235 42.6
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 2.7e-32 144.1 222 43.2
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 3.5e-32 143.7 232 41.4
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 7.9e-32 142.5 215 41.9
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 1.3e-31 141.7 226 40.7
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 1.3e-31 141.7 231 41.6
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.8e-31 141.4 172 47.7
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 5.1e-31 139.8 233 41.2
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 3.3e-30 137.1 243 40.3
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 7.4e-30 136.0 258 38.8
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.3e-29 135.2 253 37.9
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.6e-29 134.8 129 55.8
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 4.8e-29 133.3 207 43.0
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.8e-29 133.3 222 40.5
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 1.1e-28 132.1 185 42.7
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 1.4e-28 131.7 291 35.7
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 1.8e-28 131.3 261 40.2
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.4e-28 131.0 267 37.5
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.4e-28 131.0 202 44.1
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 3.1e-28 130.6 119 56.3
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 9.0e-28 129.0 259 37.5
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.2e-27 128.6 242 38.0
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.2e-27 128.6 202 43.1
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 1.2e-27 128.6 139 51.1
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.0e-27 127.9 186 41.4
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 7.6e-27 125.9 261 39.8
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 7.6e-27 125.9 232 39.2
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 1.3e-26 125.2 369 29.0
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 1.7e-26 124.8 203 39.4
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 2.2e-26 124.4 214 33.6
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 2.9e-26 124.0 238 37.8
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 2.9e-26 124.0 260 38.5
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 2.9e-26 124.0 351 30.2
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 3.8e-26 123.6 214 39.3
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 4.9e-26 123.2 200 43.5
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 4.9e-26 123.2 207 39.6
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 6.5e-26 122.9 296 34.5
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 8.4e-26 122.5 198 40.4
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.1e-25 122.1 261 39.1
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.1e-25 122.1 218 40.4
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 1.1e-25 122.1 215 34.9
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.5e-25 120.9 223 38.1
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 4.2e-25 120.2 263 38.0
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 5.5e-25 119.8 232 40.1
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 5.5e-25 119.8 218 39.4
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 5.5e-25 119.8 206 41.7
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.2e-24 118.6 214 30.8
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 2.1e-24 117.9 143 49.7
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 2.1e-24 117.9 102 61.8
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 6.1e-24 116.3 185 40.5
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 7.9e-24 115.9 274 37.6
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 7.9e-24 115.9 256 37.9
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.8e-23 114.8 220 34.5
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.8e-23 114.8 214 32.7
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.8e-23 114.8 212 39.6
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 2.3e-23 114.4 254 31.9
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 3.0e-23 114.0 178 32.6
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 5.1e-23 113.2 216 38.0
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 5.1e-23 113.2 206 39.8
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.1e-22 112.1 188 40.4
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.1e-22 112.1 205 35.6
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 1.5e-22 111.7 260 33.8
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 3.3e-22 110.5 236 36.4
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 4.3e-22 110.2 212 34.9
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 5.7e-22 109.8 276 35.1
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 1.6e-21 108.2 232 35.3
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 3.7e-21 107.1 213 35.7
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 3.7e-21 107.1 179 35.2
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.1e-20 105.5 220 32.3
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.8e-20 104.8 198 38.9
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.1e-20 104.0 210 34.8
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.9e-19 99.8 215 31.2
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.3e-18 98.6 195 33.8
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 2.9e-18 97.4 176 39.2
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 5.0e-18 96.7 213 33.8
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.1e-17 95.5 215 29.8
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.4e-17 95.1 190 35.3
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 9.4e-17 92.4 215 29.3
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 4.6e-16 90.1 234 30.3
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 3.0e-15 87.4 262 31.3
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 3.9e-15 87.0 187 37.4
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 3.3e-14 84.0 195 32.3
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 5.7e-14 83.2 108 45.4
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.8e-13 80.9 262 30.5
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 8.2e-13 79.3 221 35.3
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 3.1e-12 77.4 233 26.6
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 9.1e-12 75.9 184 31.5
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 1.2e-11 75.5 265 28.3
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 1.2e-11 75.5 197 33.5
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.2e-11 75.5 223 26.9
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.2e-11 75.5 211 32.2
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 3.4e-11 73.9 261 28.7
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 3.4e-11 73.9 263 28.9
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 5.9e-11 73.2 221 29.4
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 1.3e-10 72.0 272 29.0
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 1.7e-10 71.6 240 25.0
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 1.7e-10 71.6 207 29.0
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 1.1e-09 68.9 261 26.8
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 2.5e-09 67.8 247 26.7
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 3.2e-09 67.4 251 27.9
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 3.2e-09 67.4 270 27.8
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 7.2e-09 66.2 253 23.7
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 1.2e-08 65.5 229 29.7
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.6e-08 65.1 210 30.5
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 1.6e-08 65.1 262 30.5
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 2.7e-08 64.3 261 26.4
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 6.1e-08 63.2 271 25.5
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 6.1e-08 63.2 205 31.2
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 7.9e-08 62.8 222 27.9
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 1.0e-07 62.4 205 31.2
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 1.4e-07 62.0 273 26.4
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.4e-07 62.0 205 32.2
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 3.9e-07 60.5 216 27.8
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 5.1e-07 60.1 224 28.1
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 5.1e-07 60.1 219 27.9
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 5.1e-07 60.1 279 28.0
Oeu057996.1 Olea europaea HOM05D003589 ORTHO05D005170 5.1e-07 60.1 115 32.2
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 5.1e-07 60.1 239 28.5
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 2.0e-06 58.2 263 26.6
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 3.3e-06 57.4 253 26.5
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 5.7e-06 56.6 244 25.0
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 5.7e-06 56.6 228 27.2
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 7.4e-06 56.2 256 24.2


User provided reference genes

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