Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g015490.3 Solanum lycopersicum HOM05D000832 ORTHO05D391341 1.3e-28 129.0 65 100.0
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 2.7e-18 94.7 53 90.6
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 2.7e-18 94.7 53 90.6
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 2.7e-18 94.7 53 90.6
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 6.0e-18 93.6 53 88.7
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 6.0e-18 93.6 53 88.7
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 6.0e-18 93.6 53 88.7
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 6.0e-18 93.6 53 88.7
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 1.0e-17 92.8 53 88.7
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 1.0e-17 92.8 53 88.7
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 1.0e-17 92.8 53 88.7
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 1.3e-17 92.4 53 86.8
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 1.8e-17 92.0 53 88.7
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 2.3e-17 91.7 53 86.8
Glyma.02G130701 Glycine max HOM05D000832 ORTHO05D000982 2.3e-17 91.7 53 86.8
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 3.0e-17 91.3 53 84.9
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 3.9e-17 90.9 53 84.9
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 3.9e-17 90.9 53 84.9
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 3.9e-17 90.9 53 84.9
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 3.9e-17 90.9 53 84.9
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 3.9e-17 90.9 53 84.9
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 5.1e-17 90.5 53 83.0
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 5.1e-17 90.5 53 83.0
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 5.1e-17 90.5 53 84.9
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 5.1e-17 90.5 53 84.9
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 5.1e-17 90.5 53 84.9
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 5.1e-17 90.5 53 84.9
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 6.7e-17 90.1 53 86.8
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 6.7e-17 90.1 53 84.9
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 6.7e-17 90.1 53 84.9
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 6.7e-17 90.1 53 84.9
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 6.7e-17 90.1 53 84.9
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 6.7e-17 90.1 53 86.8
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 6.7e-17 90.1 53 86.8
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 6.7e-17 90.1 53 86.8
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 6.7e-17 90.1 53 86.8
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 8.7e-17 89.7 53 84.9
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 8.7e-17 89.7 53 84.9
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 8.7e-17 89.7 53 83.0
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 8.7e-17 89.7 53 84.9
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 8.7e-17 89.7 53 83.0
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 1.1e-16 89.4 53 83.0
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 1.1e-16 89.4 53 84.9
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 1.1e-16 89.4 53 84.9
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 1.5e-16 89.0 53 84.9
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 1.5e-16 89.0 53 84.9
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 1.5e-16 89.0 53 84.9
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 1.5e-16 89.0 53 83.0
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 1.9e-16 88.6 53 84.9
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 1.9e-16 88.6 54 83.3
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 2.5e-16 88.2 53 83.0
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 2.5e-16 88.2 53 83.0
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 2.5e-16 88.2 53 83.0
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 2.5e-16 88.2 53 83.0
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 2.5e-16 88.2 53 83.0
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 2.5e-16 88.2 53 83.0
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 83.0
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 83.0
Cpa.g.sc1.237 Carica papaya HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 83.0
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 83.0
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 84.9
MBI16_g06572_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 83.0
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 83.0
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 83.0
TAR622G0475 Trochodendron aralioides HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 83.0
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 3.3e-16 87.8 53 83.0
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 4.3e-16 87.4 53 81.1
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 4.3e-16 87.4 53 83.0
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 4.3e-16 87.4 53 81.1
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 83.0
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 83.0
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 5.7e-16 87.0 53 81.1
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 7.4e-16 86.7 53 81.1
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 7.4e-16 86.7 53 79.2
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 7.4e-16 86.7 53 83.0
TPR.G27416 Trifolium pratense HOM05D000832 ORTHO05D000982 7.4e-16 86.7 53 81.1
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 9.6e-16 86.3 53 81.1
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 9.6e-16 86.3 53 83.0
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 9.6e-16 86.3 53 81.1
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 9.6e-16 86.3 53 83.0
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 9.6e-16 86.3 53 81.1
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.3e-15 85.9 53 83.0
Ca_05096_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 1.3e-15 85.9 53 83.0
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 1.3e-15 85.9 53 83.0
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 1.3e-15 85.9 53 83.0
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 1.3e-15 85.9 53 81.1
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 1.6e-15 85.5 53 77.4
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 1.6e-15 85.5 53 83.0
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 2.1e-15 85.1 53 79.2
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 2.1e-15 85.1 53 81.1
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 2.1e-15 85.1 53 79.2
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 2.1e-15 85.1 53 79.2
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 2.8e-15 84.7 53 79.2
Medtr1g094000 Medicago truncatula HOM05D000832 ORTHO05D000982 2.8e-15 84.7 53 79.2
arahy.Tifrunner.gnm1.ann1.3YC2HT Arachis hypogaea HOM05D000832 ORTHO05D000982 3.7e-15 84.3 53 77.4
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 3.7e-15 84.3 53 77.4
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 3.7e-15 84.3 53 77.4
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 3.7e-15 84.3 53 81.1
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 3.7e-15 84.3 53 79.2
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 3.7e-15 84.3 53 81.1
Zm00001eb126420 Zea mays HOM05D000832 ORTHO05D000982 3.7e-15 84.3 53 79.2
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 4.8e-15 84.0 53 79.2
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 4.8e-15 84.0 53 79.2
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 6.3e-15 83.6 53 77.4
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 6.3e-15 83.6 53 77.4
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 6.3e-15 83.6 53 77.4
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 6.3e-15 83.6 53 79.2
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 6.3e-15 83.6 53 81.1
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 8.2e-15 83.2 53 77.4
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 8.2e-15 83.2 53 79.2
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 8.2e-15 83.2 53 73.6
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 1.1e-14 82.8 53 77.4
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 1.1e-14 82.8 53 81.1
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 3.1e-14 81.3 53 77.4
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 3.1e-14 81.3 53 77.4
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 4.1e-14 80.9 53 75.5
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 4.1e-14 80.9 53 77.4
unitig_27.g25234 Utricularia gibba HOM05D000832 ORTHO05D000982 9.0e-14 79.7 47 83.0
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 9.0e-14 79.7 53 77.4
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 1.2e-13 79.3 53 77.4
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 2.0e-13 78.6 49 81.6
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 4.5e-13 77.4 53 73.6
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 1.0e-12 76.3 53 73.6
Psat0s1185g0040 Pisum sativum HOM05D000832 ORTHO05D000982 1.3e-12 75.9 44 86.4
Psat6g187920 Pisum sativum HOM05D000832 ORTHO05D000982 1.3e-12 75.9 44 86.4
CBR_g51453 Chara braunii HOM05D000832 ORTHO05D000982 8.4e-12 73.2 54 68.5
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 7.2e-11 70.1 53 67.9
Cre03.g171950 Chlamydomonas reinhardtii HOM05D000832 ORTHO05D000982 4.6e-10 67.4 54 59.3
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 4.6e-10 67.4 53 67.9


User provided reference genes

Program Settings