Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g015470.4 Solanum lycopersicum HOM05D006476 ORTHO05D008178 0.0e+00 1093.6 525 100.0
Solyc09g013100.3 Solanum lycopersicum HOM05D006476 ORTHO05D008178 6.8e-261 903.7 510 86.9
Sopen09g006940 Solanum pennellii HOM05D006476 ORTHO05D008178 1.7e-259 899.0 510 86.5
PGSC0003DMG400029192 Solanum tuberosum HOM05D006476 ORTHO05D008178 1.5e-244 849.4 580 73.6
Nitab4.5_0004676g0040 Nicotiana tabacum HOM05D006476 ORTHO05D008178 9.2e-234 813.5 511 76.7
CAN.G1194.2 Capsicum annuum HOM05D006476 ORTHO05D008178 4.6e-233 811.2 515 78.1
Nitab4.5_0000230g0070 Nicotiana tabacum HOM05D006476 ORTHO05D008178 3.0e-232 808.5 518 75.9
MSTRG.10202 Avicennia marina HOM05D006476 ORTHO05D008178 1.8e-205 719.5 509 68.2
Hma1.2p1_0479F.1_g161560 Hydrangea macrophylla HOM05D006476 ORTHO05D008178 7.9e-201 704.1 504 66.3
Dinv10268 Davidia involucrata HOM05D006476 ORTHO05D008178 3.0e-200 702.2 514 66.3
Migut.L02041 Erythranthe guttata HOM05D006476 ORTHO05D008178 4.1e-197 691.8 513 65.3
Thecc.05G008700 Theobroma cacao HOM05D006476 ORTHO05D008178 9.0e-197 690.6 514 65.8
Gohir.D04G134700 Gossypium hirsutum HOM05D006476 ORTHO05D008178 1.5e-196 689.9 514 66.0
Gohir.A04G095014 Gossypium hirsutum HOM05D006476 ORTHO05D008178 5.9e-196 688.0 514 65.8
Gorai.012G118300 Gossypium raimondii HOM05D006476 ORTHO05D008178 1.0e-195 687.2 514 65.6
Cc06_g00920 Coffea canephora HOM05D006476 ORTHO05D008178 3.5e-193 678.7 510 66.3
PGR031G1226 Punica granatum HOM05D006476 ORTHO05D008178 3.7e-190 668.7 510 63.3
FvH4_6g10790 Fragaria vesca HOM05D006476 ORTHO05D008178 1.4e-189 666.8 535 62.8
unitig_26.g9345 Utricularia gibba HOM05D006476 ORTHO05D008178 2.4e-189 666.0 492 65.9
Gohir.A01G229200 Gossypium hirsutum HOM05D006476 ORTHO05D008178 3.1e-189 665.6 503 64.6
Gorai.002G265900 Gossypium raimondii HOM05D006476 ORTHO05D008178 9.0e-189 664.1 503 64.4
FAN09G2591 Fragaria x ananassa HOM05D006476 ORTHO05D008178 1.2e-188 663.7 539 62.3
FAN09G3668 Fragaria x ananassa HOM05D006476 ORTHO05D008178 1.2e-188 663.7 539 62.3
Potri.016G123900 Populus trichocarpa HOM05D006476 ORTHO05D008178 1.5e-188 663.3 514 63.4
RcHm_v2.0_Chr3g0461841 Rosa chinensis HOM05D006476 ORTHO05D008178 1.5e-188 663.3 512 63.9
QL07p034180 Quercus lobata HOM05D006476 ORTHO05D008178 7.7e-188 661.0 501 65.5
FAN05G4924 Fragaria x ananassa HOM05D006476 ORTHO05D008178 1.0e-187 660.6 510 64.3
Gohir.D01G219100 Gossypium hirsutum HOM05D006476 ORTHO05D008178 1.0e-187 660.6 503 64.2
TAR633G1736 Trochodendron aralioides HOM05D006476 ORTHO05D008178 1.7e-187 659.8 512 63.3
FAN05G3786 Fragaria x ananassa HOM05D006476 ORTHO05D008178 1.4e-186 656.8 510 64.1
CiPaw.10G160000 Carya illinoinensis HOM05D006476 ORTHO05D008178 1.9e-186 656.4 491 65.6
GSVIVG01030297001 Vitis vinifera HOM05D006476 ORTHO05D008178 7.2e-186 654.4 511 65.0
FAN14G4129 Fragaria x ananassa HOM05D006476 ORTHO05D008178 9.4e-186 654.1 547 61.1
Cpa.g.sc162.36 Carica papaya HOM05D006476 ORTHO05D008178 1.6e-185 653.3 501 63.3
Cfa017133 Carpinus fangiana HOM05D006476 ORTHO05D008178 1.6e-185 653.3 493 65.1
Haze_21064 Corylus avellana HOM05D006476 ORTHO05D008178 2.1e-185 652.9 493 65.1
Sed0000477 Sechium edule HOM05D006476 ORTHO05D008178 2.7e-185 652.5 502 64.9
COL.COLO4_14474 Corchorus olitorius HOM05D006476 ORTHO05D008178 1.4e-184 650.2 514 61.7
Duzib093G1646 Durio zibethinus HOM05D006476 ORTHO05D008178 2.3e-184 649.4 503 63.4
CSS0013060 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 1.1e-183 647.1 512 62.9
CSS0023949 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 1.1e-183 647.1 512 62.9
Nn2g10977 Nelumbo nucifera HOM05D006476 ORTHO05D008178 1.1e-183 647.1 513 63.4
Sabra16G0118700 Salix brachista HOM05D006476 ORTHO05D008178 7.4e-183 644.4 543 59.7
TWI53G1048 Tripterygium wilfordii HOM05D006476 ORTHO05D008178 9.7e-183 644.0 486 64.8
Prupe.6G283400 Prunus persica HOM05D006476 ORTHO05D008178 1.1e-181 640.6 512 62.7
ClCG10G022410 Citrullus lanatus HOM05D006476 ORTHO05D008178 2.4e-181 639.4 523 61.2
THA.LOC104816184 Tarenaya hassleriana HOM05D006476 ORTHO05D008178 6.9e-181 637.9 514 60.7
HanXRQChr10g0287121 Helianthus annuus HOM05D006476 ORTHO05D008178 9.1e-181 637.5 505 61.2
Sc07g0006480 Simmondsia chinensis HOM05D006476 ORTHO05D008178 9.1e-181 637.5 499 62.9
MD12G1177900 Malus domestica HOM05D006476 ORTHO05D008178 3.4e-180 635.6 514 62.6
Eucgr.A00607 Eucalyptus grandis HOM05D006476 ORTHO05D008178 5.9e-180 634.8 514 61.7
Thhalv10013251m.g Eutrema salsugineum HOM05D006476 ORTHO05D008178 1.7e-179 633.3 502 62.2
Sp6g40850 Schrenkiella parvula HOM05D006476 ORTHO05D008178 2.9e-179 632.5 502 62.2
BcaB01g06237 Brassica carinata HOM05D006476 ORTHO05D008178 5.0e-179 631.7 496 63.1
ECA247G0212 Erigeron canadensis HOM05D006476 ORTHO05D008178 1.1e-178 630.6 516 59.3
Lsat_1_v5_gn_9_37301 Lactuca sativa HOM05D006476 ORTHO05D008178 1.4e-178 630.2 502 61.2
CARHR211940 Cardamine hirsuta HOM05D006476 ORTHO05D008178 1.9e-178 629.8 512 60.9
Carub.0006s0024 Capsella rubella HOM05D006476 ORTHO05D008178 4.2e-178 628.6 513 61.0
AL6G10460 Arabidopsis lyrata HOM05D006476 ORTHO05D008178 5.5e-178 628.2 502 61.8
Aqoxy1G01315 Aquilegia oxysepala HOM05D006476 ORTHO05D008178 1.8e-176 623.2 521 59.3
CANSAT35G1014 Cannabis sativa HOM05D006476 ORTHO05D008178 1.8e-176 623.2 501 61.9
AT5G01590 Arabidopsis thaliana HOM05D006476 ORTHO05D008178 3.0e-176 622.5 510 61.0
CDE04G2527 Ceratophyllum demersum HOM05D006476 ORTHO05D008178 6.7e-176 621.3 509 61.1
Peaxi162Scf01132g00347 Petunia axillaris HOM05D006476 ORTHO05D008178 1.1e-175 620.5 445 70.1
C03p00370 Brassica napus HOM05D006476 ORTHO05D008178 1.5e-175 620.2 494 61.7
Ciclev10011480m.g Citrus clementina HOM05D006476 ORTHO05D008178 3.3e-175 619.0 507 60.2
Manes.09G110300 Manihot esculenta HOM05D006476 ORTHO05D008178 3.3e-175 619.0 504 60.3
Aa31LG1G23210 Aethionema arabicum HOM05D006476 ORTHO05D008178 4.4e-175 618.6 492 60.8
A03p00230 Brassica napus HOM05D006476 ORTHO05D008178 4.4e-175 618.6 493 61.7
BraA03t09413Z Brassica rapa HOM05D006476 ORTHO05D008178 4.4e-175 618.6 493 61.7
BcaB01g06105 Brassica carinata HOM05D006476 ORTHO05D008178 5.7e-175 618.2 494 61.7
BolC3t12605H Brassica oleracea HOM05D006476 ORTHO05D008178 5.7e-175 618.2 494 61.7
PSO349G0327 Papaver somniferum HOM05D006476 ORTHO05D008178 1.3e-174 617.1 509 60.7
PSO765G0213 Papaver somniferum HOM05D006476 ORTHO05D008178 4.8e-174 615.1 509 60.7
Ah.12g058950 Amaranthus hybridus HOM05D006476 ORTHO05D008178 1.4e-173 613.6 509 58.5
MELO3C009137.2 Cucumis melo HOM05D006476 ORTHO05D008178 5.3e-173 611.7 512 60.2
Atru.chr8.2316 Acer truncatum HOM05D006476 ORTHO05D008178 9.1e-173 610.9 500 59.6
Lalb_Chr12g0207111 Lupinus albus HOM05D006476 ORTHO05D008178 4.5e-172 608.6 504 60.5
Lj3g0015173 Lotus japonicus HOM05D006476 ORTHO05D008178 7.7e-172 607.8 504 58.5
CsaV3_3G033460 Cucumis sativus L. HOM05D006476 ORTHO05D008178 2.2e-171 606.3 498 59.8
EL10Ac5g12509 Beta vulgaris HOM05D006476 ORTHO05D008178 4.7e-169 598.6 502 59.6
Lj3A863T42 Lonicera japonica HOM05D006476 ORTHO05D008178 4.0e-168 595.5 449 64.1
Oeu038728.1 Olea europaea HOM05D006476 ORTHO05D008178 6.7e-168 594.7 508 59.4
Hund10946 Selenicereus undatus HOM05D006476 ORTHO05D008178 6.3e-166 588.2 498 56.8
arahy.Tifrunner.gnm1.ann1.39JBYW Arachis hypogaea HOM05D006476 ORTHO05D008178 2.4e-165 586.3 527 55.2
arahy.Tifrunner.gnm1.ann1.86RN6H Arachis hypogaea HOM05D006476 ORTHO05D008178 4.5e-164 582.0 523 55.3
CAN.G168.26 Capsicum annuum HOM05D006476 ORTHO05D008178 6.1e-161 571.6 435 66.4
Glyma.01G124200 Glycine max HOM05D006476 ORTHO05D008178 3.0e-160 569.3 507 55.0
VMungo0331G1781 Vigna mungo HOM05D006476 ORTHO05D008178 2.0e-159 566.6 516 54.5
ATR0789G002 Amborella trichopoda HOM05D006476 ORTHO05D008178 3.4e-159 565.8 502 56.6
Phvul.010G065700 Phaseolus vulgaris HOM05D006476 ORTHO05D008178 7.5e-159 564.7 516 54.3
AUR62030513 Chenopodium quinoa HOM05D006476 ORTHO05D008178 8.5e-155 551.2 489 57.3
DCAR_018674 Daucus carota HOM05D006476 ORTHO05D008178 4.2e-154 548.9 428 62.1
HPP92_001920 Vanilla planifolia HOM05D006476 ORTHO05D008178 9.4e-154 547.7 503 56.1
SGA_v2.0_scaffold110G31194 Striga asiatica HOM05D006476 ORTHO05D008178 8.8e-152 541.2 517 53.2
Dinv12144 Davidia involucrata HOM05D006476 ORTHO05D008178 2.3e-144 516.5 353 70.0
Actinidia29077 Actinidia chinensis HOM05D006476 ORTHO05D008178 1.3e-142 510.8 513 51.3
TPR.G5241 Trifolium pratense HOM05D006476 ORTHO05D008178 3.3e-138 496.1 512 49.0
Medtr4g014600 Medicago truncatula HOM05D006476 ORTHO05D008178 4.3e-138 495.7 499 49.9
Ca_20338_v3 Cicer arietinum L. HOM05D006476 ORTHO05D008178 2.4e-133 479.9 509 48.7
Psat7g247200 Pisum sativum HOM05D006476 ORTHO05D008178 7.3e-130 468.4 475 48.4
Glyma.03G050400 Glycine max HOM05D006476 ORTHO05D008178 1.2e-121 441.0 410 55.1
Pp3c1_41280 Physcomitrium patens HOM05D006476 ORTHO05D008178 6.4e-94 349.0 400 45.0
AagrBONN_evm.TU.Sc2ySwM_344.2114 Anthoceros agrestis HOM05D006476 ORTHO05D008178 2.7e-92 343.6 395 42.8
Mapoly0062s0099 Marchantia polymorpha HOM05D006476 ORTHO05D008178 3.7e-89 333.2 385 44.7
SEGI_26269 Sequoiadendron giganteum HOM05D006476 ORTHO05D008178 7.1e-85 318.9 462 39.4
SMO364G0439 Selaginella moellendorffii HOM05D006476 ORTHO05D008178 2.8e-81 307.0 394 40.1
arahy.Tifrunner.gnm1.ann1.36T17X Arachis hypogaea HOM05D006476 ORTHO05D008178 6.3e-81 305.8 257 56.8
Oeu061560.1 Olea europaea HOM05D006476 ORTHO05D008178 1.1e-64 251.9 162 71.0
AUR62030780 Chenopodium quinoa HOM05D006476 ORTHO05D008178 1.3e-46 191.8 119 73.1
MD04G1164400 Malus domestica HOM05D006476 ORTHO05D008178 1.4e-35 155.2 92 75.0
MD04G1164300 Malus domestica HOM05D006476 ORTHO05D008178 7.5e-34 149.4 112 65.2
Haze_21099 Corylus avellana HOM05D006476 ORTHO05D008178 1.7e-30 138.3 122 54.9
CBR_g7951 Chara braunii HOM05D006476 ORTHO05D008178 8.6e-30 136.0 194 39.2
ATR0810G038 Amborella trichopoda HOM05D006476 ORTHO05D008178 3.9e-22 110.5 89 55.1
BcaNung03295 Brassica carinata HOM05D006476 ORTHO05D008178 1.0e-14 85.9 76 55.3
C09p74660 Brassica napus HOM05D000872 ORTHO05D000777 1.0e-14 85.9 76 55.3
BolC9t60200H Brassica oleracea HOM05D006476 ORTHO05D008178 1.0e-14 85.9 76 55.3
RcHm_v2.0_Chr3g0461921 Rosa chinensis HOM05D006476 ORTHO05D008178 1.7e-14 85.1 56 66.1
MCO15G063 Micromonas commoda HOM05D006476 ORTHO05D008178 3.0e-06 57.8 57 36.8
PRCOL_00007100 Prasinoderma coloniale HOM05D006476 ORTHO05D008178 5.1e-06 57.0 47 40.4


User provided reference genes

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