Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 2.1e-191 672.2 330 100.0
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.1e-184 649.8 329 97.9
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.3e-164 580.9 332 88.3
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 1.9e-139 499.6 386 68.7
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.0e-129 465.7 381 66.7
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 4.7e-127 458.4 397 64.2
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 1.4e-123 446.8 397 62.5
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 4.2e-115 418.7 397 60.5
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 2.7e-82 309.7 401 48.1
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 4.8e-79 298.9 379 49.1
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.2e-77 294.3 379 49.3
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 5.9e-77 292.0 388 46.9
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 5.0e-76 288.9 397 45.6
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 6.5e-76 288.5 388 46.1
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.4e-75 287.3 389 46.3
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.2e-74 284.3 388 45.4
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.6e-74 283.9 399 48.1
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 4.7e-74 282.3 385 47.8
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 7.9e-74 281.6 396 46.2
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 2.6e-72 276.6 391 46.0
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 3.7e-71 272.7 392 45.7
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 4.8e-71 272.3 386 47.4
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.8e-71 272.3 387 44.2
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 2.0e-69 266.9 386 44.0
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 2.6e-69 266.5 393 45.0
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 2.6e-69 266.5 390 44.4
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 7.7e-69 265.0 387 42.9
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.7e-68 263.8 401 44.6
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.1e-67 261.2 374 46.8
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.1e-66 256.9 391 43.0
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.7e-66 256.5 387 42.6
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.0e-65 254.6 350 50.3
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.4e-65 254.2 392 44.9
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 3.9e-65 252.7 389 44.0
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 6.7e-65 251.9 398 44.0
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.5e-64 250.8 391 44.8
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 4.4e-64 249.2 365 46.6
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 1.3e-63 247.7 379 44.1
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.2e-63 246.9 414 42.3
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 1.1e-62 244.6 350 48.6
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 1.4e-62 244.2 377 45.4
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.4e-62 244.2 377 45.4
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.4e-62 244.2 377 45.4
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.4e-62 243.4 377 44.8
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.6e-61 240.7 385 42.6
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 2.0e-61 240.4 388 43.0
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 2.6e-61 240.0 376 42.3
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.5e-61 239.6 377 44.8
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 4.5e-61 239.2 388 41.8
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 7.7e-61 238.4 363 45.2
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 2.2e-60 236.9 374 43.3
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.5e-59 234.2 377 44.3
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.9e-59 233.8 342 45.3
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 4.2e-59 232.6 345 44.9
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 2.1e-58 230.3 345 44.6
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.6e-58 229.6 355 44.8
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 3.0e-57 226.5 381 42.8
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 6.8e-57 225.3 369 42.3
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 6.8e-57 225.3 346 43.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 1.5e-56 224.2 345 43.5
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 5.7e-56 222.2 417 40.8
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 1.3e-55 221.1 416 40.6
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 1.1e-54 218.0 349 43.0
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 1.8e-54 217.2 348 44.3
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.8e-54 217.2 266 49.2
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.4e-54 216.9 258 49.2
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 4.1e-54 216.1 359 41.5
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 4.1e-54 216.1 345 42.9
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 4.5e-53 212.6 349 43.3
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 7.7e-53 211.8 363 43.8
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 1.0e-52 211.5 348 44.0
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 8.5e-52 208.4 401 38.7
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 3.2e-51 206.5 300 43.7
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 9.4e-51 204.9 345 41.4
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 2.1e-50 203.8 348 42.2
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 4.7e-50 202.6 369 39.3
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.8e-49 200.7 359 40.1
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 2.3e-49 200.3 315 42.5
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 4.0e-49 199.5 271 45.8
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 6.8e-49 198.7 359 39.8
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 8.8e-49 198.4 339 41.6
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 4.4e-48 196.1 335 42.1
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.3e-47 194.5 331 41.1
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 2.8e-47 193.4 329 41.9
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 4.9e-47 192.6 364 38.5
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.1e-46 191.4 348 39.9
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 2.4e-46 190.3 368 38.0
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 4.1e-46 189.5 404 38.4
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.8e-42 176.8 336 36.9
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 3.6e-42 176.4 353 38.8
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 8.0e-42 175.3 328 38.1
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 1.4e-41 174.5 391 35.3
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.5e-40 171.0 271 42.4
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 2.6e-40 170.2 330 37.6
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 9.8e-40 168.3 359 39.0
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 2.0e-37 160.6 281 38.8
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 7.8e-37 158.7 283 39.6
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.7e-36 157.5 314 38.9
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 7.3e-35 152.1 221 47.1
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 9.5e-35 151.8 316 39.9
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 9.5e-35 151.8 343 36.2
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 2.1e-34 150.6 285 38.9
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 2.1e-34 150.6 247 40.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 1.8e-33 147.5 282 37.9
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 5.8e-32 142.5 344 35.8
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 9.8e-32 141.7 334 34.4
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.7e-31 141.0 286 36.4
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 8.3e-31 138.7 288 37.5
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 9.2e-30 135.2 327 35.5
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.6e-29 134.4 355 34.9
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 3.5e-29 133.3 286 35.3
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 3.5e-29 133.3 296 36.1
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 1.0e-28 131.7 285 35.8
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 3.0e-28 130.2 286 35.7
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 6.6e-28 129.0 286 35.7
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 6.6e-28 129.0 296 33.8
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 7.3e-27 125.6 194 43.8
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 2.8e-26 123.6 263 37.6
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.5e-24 117.9 289 35.3
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 8.3e-23 112.1 315 33.3
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 3.2e-22 110.2 277 34.3
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 9.5e-19 98.6 196 36.7
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.2e-18 98.2 150 41.3
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 1.4e-17 94.7 219 35.2
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 2.3e-17 94.0 145 42.8
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 6.8e-17 92.4 296 33.4
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 1.2e-16 91.7 233 36.1
Sopen01g013770 Solanum pennellii HOM05D005357 ORTHO05D006354 3.7e-15 86.7 116 47.4
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 5.4e-14 82.8 71 59.2
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 6.6e-12 75.9 49 67.3
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 1.1e-11 75.1 158 36.1
Sopen01g013720 Solanum pennellii HOM05D005357 ORTHO05D006354 7.3e-11 72.4 85 56.5
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.1e-09 68.6 125 36.8
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.3e-07 61.6 145 35.2
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 3.8e-07 60.1 88 37.5


User provided reference genes

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