Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g013100.3 Solanum lycopersicum HOM05D006476 ORTHO05D008178 2.2e-309 1064.7 510 100.0
Sopen09g006940 Solanum pennellii HOM05D006476 ORTHO05D008178 2.0e-305 1051.6 510 98.6
PGSC0003DMG400029192 Solanum tuberosum HOM05D006476 ORTHO05D008178 8.3e-288 993.0 580 84.0
Nitab4.5_0004676g0040 Nicotiana tabacum HOM05D006476 ORTHO05D008178 9.2e-279 963.0 511 88.3
Nitab4.5_0000230g0070 Nicotiana tabacum HOM05D006476 ORTHO05D008178 7.3e-276 953.4 518 86.9
CAN.G1194.2 Capsicum annuum HOM05D006476 ORTHO05D008178 1.0e-274 949.5 515 88.9
Solyc09g015470.4 Solanum lycopersicum HOM05D006476 ORTHO05D008178 1.9e-260 902.1 510 86.9
MSTRG.10202 Avicennia marina HOM05D006476 ORTHO05D008178 1.8e-242 842.4 509 77.0
Hma1.2p1_0479F.1_g161560 Hydrangea macrophylla HOM05D006476 ORTHO05D008178 4.9e-240 834.3 504 76.0
Dinv10268 Davidia involucrata HOM05D006476 ORTHO05D008178 3.2e-239 831.6 514 75.9
Migut.L02041 Erythranthe guttata HOM05D006476 ORTHO05D008178 3.0e-237 825.1 513 75.2
Thecc.05G008700 Theobroma cacao HOM05D006476 ORTHO05D008178 1.5e-236 822.8 514 75.7
Gohir.D04G134700 Gossypium hirsutum HOM05D006476 ORTHO05D008178 5.3e-234 814.3 514 74.9
Gohir.A04G095014 Gossypium hirsutum HOM05D006476 ORTHO05D008178 1.5e-233 812.8 514 74.7
Cc06_g00920 Coffea canephora HOM05D006476 ORTHO05D008178 2.0e-233 812.4 510 76.3
Gorai.012G118300 Gossypium raimondii HOM05D006476 ORTHO05D008178 2.6e-233 812.0 514 74.5
PGR031G1226 Punica granatum HOM05D006476 ORTHO05D008178 1.6e-230 802.7 508 73.6
QL07p034180 Quercus lobata HOM05D006476 ORTHO05D008178 6.0e-230 800.8 510 75.3
unitig_26.g9345 Utricularia gibba HOM05D006476 ORTHO05D008178 2.3e-229 798.9 492 76.0
Gohir.A01G229200 Gossypium hirsutum HOM05D006476 ORTHO05D008178 1.1e-228 796.6 503 74.4
FAN05G4924 Fragaria x ananassa HOM05D006476 ORTHO05D008178 2.5e-228 795.4 510 74.3
FvH4_6g10790 Fragaria vesca HOM05D006476 ORTHO05D008178 3.3e-228 795.0 510 74.7
Gorai.002G265900 Gossypium raimondii HOM05D006476 ORTHO05D008178 3.3e-228 795.0 503 74.2
RcHm_v2.0_Chr3g0461841 Rosa chinensis HOM05D006476 ORTHO05D008178 3.3e-228 795.0 519 74.2
Potri.016G123900 Populus trichocarpa HOM05D006476 ORTHO05D008178 1.3e-227 793.1 514 73.0
FAN09G2591 Fragaria x ananassa HOM05D006476 ORTHO05D008178 4.8e-227 791.2 510 74.1
FAN09G3668 Fragaria x ananassa HOM05D006476 ORTHO05D008178 4.8e-227 791.2 510 74.1
FAN05G3786 Fragaria x ananassa HOM05D006476 ORTHO05D008178 8.1e-227 790.4 512 74.0
Sed0000477 Sechium edule HOM05D006476 ORTHO05D008178 8.1e-227 790.4 502 75.3
TAR633G1736 Trochodendron aralioides HOM05D006476 ORTHO05D008178 8.1e-227 790.4 513 73.1
Gohir.D01G219100 Gossypium hirsutum HOM05D006476 ORTHO05D008178 3.1e-226 788.5 503 73.8
CiPaw.10G160000 Carya illinoinensis HOM05D006476 ORTHO05D008178 2.6e-225 785.4 491 75.4
GSVIVG01030297001 Vitis vinifera HOM05D006476 ORTHO05D008178 2.6e-225 785.4 507 75.0
COL.COLO4_14474 Corchorus olitorius HOM05D006476 ORTHO05D008178 4.5e-225 784.6 514 71.4
Cfa017133 Carpinus fangiana HOM05D006476 ORTHO05D008178 1.3e-224 783.1 493 75.3
Haze_21064 Corylus avellana HOM05D006476 ORTHO05D008178 1.3e-224 783.1 493 75.1
FAN14G4129 Fragaria x ananassa HOM05D006476 ORTHO05D008178 2.2e-224 782.3 522 72.6
Duzib093G1646 Durio zibethinus HOM05D006476 ORTHO05D008178 1.4e-223 779.6 503 72.8
Cpa.g.sc162.36 Carica papaya HOM05D006476 ORTHO05D008178 3.2e-223 778.5 503 73.2
Prupe.6G283400 Prunus persica HOM05D006476 ORTHO05D008178 5.5e-223 777.7 512 73.2
TWI53G1048 Tripterygium wilfordii HOM05D006476 ORTHO05D008178 2.7e-222 775.4 486 74.9
CSS0013060 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 6.0e-222 774.2 512 72.1
CSS0023949 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 6.0e-222 774.2 512 72.1
Nn2g10977 Nelumbo nucifera HOM05D006476 ORTHO05D008178 6.0e-222 774.2 513 72.7
ClCG10G022410 Citrullus lanatus HOM05D006476 ORTHO05D008178 7.9e-222 773.9 522 71.1
Sabra16G0118700 Salix brachista HOM05D006476 ORTHO05D008178 1.3e-221 773.1 543 68.5
MD12G1177900 Malus domestica HOM05D006476 ORTHO05D008178 5.6e-220 767.7 514 72.4
HanXRQChr10g0287121 Helianthus annuus HOM05D006476 ORTHO05D008178 2.1e-219 765.8 505 70.3
THA.LOC104816184 Tarenaya hassleriana HOM05D006476 ORTHO05D008178 2.1e-219 765.8 514 70.2
Peaxi162Scf01132g00347 Petunia axillaris HOM05D006476 ORTHO05D008178 1.1e-218 763.5 445 82.7
Eucgr.A00607 Eucalyptus grandis HOM05D006476 ORTHO05D008178 1.8e-218 762.7 514 70.8
Sc07g0006480 Simmondsia chinensis HOM05D006476 ORTHO05D008178 1.8e-218 762.7 499 72.3
Thhalv10013251m.g Eutrema salsugineum HOM05D006476 ORTHO05D008178 2.4e-218 762.3 502 71.5
Sp6g40850 Schrenkiella parvula HOM05D006476 ORTHO05D008178 6.9e-218 760.8 502 71.3
AL6G10460 Arabidopsis lyrata HOM05D006476 ORTHO05D008178 1.2e-217 760.0 502 71.1
Carub.0006s0024 Capsella rubella HOM05D006476 ORTHO05D008178 1.5e-217 759.6 513 70.2
BcaB01g06237 Brassica carinata HOM05D006476 ORTHO05D008178 2.6e-217 758.8 496 71.8
CARHR211940 Cardamine hirsuta HOM05D006476 ORTHO05D008178 2.6e-217 758.8 512 69.5
ECA247G0212 Erigeron canadensis HOM05D006476 ORTHO05D008178 2.6e-217 758.8 516 68.4
Lsat_1_v5_gn_9_37301 Lactuca sativa HOM05D006476 ORTHO05D008178 5.8e-217 757.7 502 70.3
CANSAT35G1014 Cannabis sativa HOM05D006476 ORTHO05D008178 7.6e-217 757.3 501 71.7
Manes.09G110300 Manihot esculenta HOM05D006476 ORTHO05D008178 1.9e-215 752.7 504 70.2
AT5G01590 Arabidopsis thaliana HOM05D006476 ORTHO05D008178 9.3e-215 750.4 510 69.8
Aqoxy1G01315 Aquilegia oxysepala HOM05D006476 ORTHO05D008178 1.2e-214 750.0 521 68.3
Aa31LG1G23210 Aethionema arabicum HOM05D006476 ORTHO05D008178 4.6e-214 748.0 492 70.5
BraA03t09413Z Brassica rapa HOM05D006476 ORTHO05D008178 2.3e-213 745.7 493 70.8
Ciclev10011480m.g Citrus clementina HOM05D006476 ORTHO05D008178 3.0e-213 745.3 507 69.8
CDE04G2527 Ceratophyllum demersum HOM05D006476 ORTHO05D008178 3.9e-213 745.0 510 69.6
MELO3C009137.2 Cucumis melo HOM05D006476 ORTHO05D008178 3.9e-213 745.0 512 69.9
A03p00230 Brassica napus HOM05D006476 ORTHO05D008178 5.1e-213 744.6 493 70.6
C03p00370 Brassica napus HOM05D006476 ORTHO05D008178 8.7e-213 743.8 491 70.9
PSO765G0213 Papaver somniferum HOM05D006476 ORTHO05D008178 1.5e-212 743.0 509 69.9
Atru.chr8.2316 Acer truncatum HOM05D006476 ORTHO05D008178 1.9e-212 742.7 500 69.8
BcaB01g06105 Brassica carinata HOM05D006476 ORTHO05D008178 3.3e-212 741.9 491 70.9
BolC3t12605H Brassica oleracea HOM05D006476 ORTHO05D008178 3.3e-212 741.9 491 70.9
CsaV3_3G033460 Cucumis sativus L. HOM05D006476 ORTHO05D008178 3.3e-212 741.9 498 70.1
PSO349G0327 Papaver somniferum HOM05D006476 ORTHO05D008178 5.7e-212 741.1 509 69.7
Lj3g0015173 Lotus japonicus HOM05D006476 ORTHO05D008178 3.1e-210 735.3 504 68.3
Lalb_Chr12g0207111 Lupinus albus HOM05D006476 ORTHO05D008178 4.1e-210 734.9 503 70.2
Ah.12g058950 Amaranthus hybridus HOM05D006476 ORTHO05D008178 5.3e-210 734.6 509 67.2
EL10Ac5g12509 Beta vulgaris HOM05D006476 ORTHO05D008178 2.5e-207 725.7 502 68.7
Lj3A863T42 Lonicera japonica HOM05D006476 ORTHO05D008178 1.6e-206 723.0 449 74.4
arahy.Tifrunner.gnm1.ann1.39JBYW Arachis hypogaea HOM05D006476 ORTHO05D008178 3.6e-206 721.8 527 65.3
Hund10946 Selenicereus undatus HOM05D006476 ORTHO05D008178 1.3e-205 719.9 498 67.1
arahy.Tifrunner.gnm1.ann1.86RN6H Arachis hypogaea HOM05D006476 ORTHO05D008178 6.7e-205 717.6 523 65.4
Oeu038728.1 Olea europaea HOM05D006476 ORTHO05D008178 4.5e-201 704.9 508 67.9
Glyma.01G124200 Glycine max HOM05D006476 ORTHO05D008178 7.2e-199 697.6 507 64.7
CAN.G168.26 Capsicum annuum HOM05D006476 ORTHO05D008178 2.7e-198 695.7 435 77.9
Phvul.010G065700 Phaseolus vulgaris HOM05D006476 ORTHO05D008178 1.1e-196 690.3 513 63.7
ATR0789G002 Amborella trichopoda HOM05D006476 ORTHO05D008178 3.3e-196 688.7 502 65.7
VMungo0331G1781 Vigna mungo HOM05D006476 ORTHO05D008178 5.7e-196 688.0 513 63.4
DCAR_018674 Daucus carota HOM05D006476 ORTHO05D008178 3.4e-193 678.7 428 73.4
AUR62030513 Chenopodium quinoa HOM05D006476 ORTHO05D008178 5.0e-192 674.9 489 66.9
SGA_v2.0_scaffold110G31194 Striga asiatica HOM05D006476 ORTHO05D008178 7.9e-190 667.5 517 62.5
HPP92_001920 Vanilla planifolia HOM05D006476 ORTHO05D008178 1.3e-184 650.2 503 63.6
Dinv12144 Davidia involucrata HOM05D006476 ORTHO05D008178 4.7e-182 641.7 353 83.3
Actinidia29077 Actinidia chinensis HOM05D006476 ORTHO05D008178 1.2e-180 637.1 513 60.8
TPR.G5241 Trifolium pratense HOM05D006476 ORTHO05D008178 3.8e-176 622.1 512 58.6
Medtr4g014600 Medicago truncatula HOM05D006476 ORTHO05D008178 2.5e-175 619.4 501 59.1
Ca_20338_v3 Cicer arietinum L. HOM05D006476 ORTHO05D008178 1.1e-170 604.0 506 58.5
Psat7g247200 Pisum sativum HOM05D006476 ORTHO05D008178 5.0e-168 595.1 470 58.5
Glyma.03G050400 Glycine max HOM05D006476 ORTHO05D008178 9.5e-159 564.3 405 66.4
Pp3c1_41280 Physcomitrium patens HOM05D006476 ORTHO05D008178 2.7e-121 439.9 409 52.8
AagrBONN_evm.TU.Sc2ySwM_344.2114 Anthoceros agrestis HOM05D006476 ORTHO05D008178 3.9e-120 436.0 395 51.4
Mapoly0062s0099 Marchantia polymorpha HOM05D006476 ORTHO05D008178 5.6e-119 432.2 385 53.8
arahy.Tifrunner.gnm1.ann1.36T17X Arachis hypogaea HOM05D006476 ORTHO05D008178 9.9e-116 421.4 257 73.9
SEGI_26269 Sequoiadendron giganteum HOM05D006476 ORTHO05D008178 2.3e-112 410.2 462 46.3
SMO364G0439 Selaginella moellendorffii HOM05D006476 ORTHO05D008178 5.1e-112 409.1 418 47.8
AUR62030780 Chenopodium quinoa HOM05D006476 ORTHO05D008178 3.8e-75 286.6 172 75.6
Oeu061560.1 Olea europaea HOM05D006476 ORTHO05D008178 2.8e-70 270.4 162 75.3
MD04G1164400 Malus domestica HOM05D006476 ORTHO05D008178 7.0e-53 212.6 120 81.7
MD04G1164300 Malus domestica HOM05D006476 ORTHO05D008178 4.9e-38 163.3 112 69.6
CBR_g7951 Chara braunii HOM05D006476 ORTHO05D008178 1.6e-36 158.3 310 31.9
Haze_21099 Corylus avellana HOM05D006476 ORTHO05D008178 2.6e-31 141.0 122 55.7
ATR0810G038 Amborella trichopoda HOM05D006476 ORTHO05D008178 7.5e-23 112.8 89 56.2
RcHm_v2.0_Chr3g0461921 Rosa chinensis HOM05D006476 ORTHO05D008178 3.4e-15 87.4 56 67.9
BcaNung03295 Brassica carinata HOM05D006476 ORTHO05D008178 2.9e-14 84.3 76 53.9
C09p74660 Brassica napus HOM05D000872 ORTHO05D000777 2.9e-14 84.3 76 53.9
BolC9t60200H Brassica oleracea HOM05D006476 ORTHO05D008178 2.9e-14 84.3 76 53.9
PRCOL_00007100 Prasinoderma coloniale HOM05D006476 ORTHO05D008178 4.4e-07 60.5 99 30.3
MCO15G063 Micromonas commoda HOM05D006476 ORTHO05D008178 7.6e-07 59.7 58 36.2


User provided reference genes

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