Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g011880.3 Solanum lycopersicum HOM05D006079 ORTHO05D008156 6.4e-249 863.6 432 100.0
Sopen09g006700 Solanum pennellii HOM05D006079 ORTHO05D008156 3.5e-247 857.8 432 99.1
PGSC0003DMG400020333 Solanum tuberosum HOM05D006079 ORTHO05D008156 6.4e-241 837.0 434 96.5
Nitab4.5_0007539g0010 Nicotiana tabacum HOM05D006079 ORTHO05D008156 3.4e-226 788.1 433 91.2
Nitab4.5_0000008g0510 Nicotiana tabacum HOM05D006079 ORTHO05D008156 3.5e-223 778.1 433 90.5
Peaxi162Scf01352g00015 Petunia axillaris HOM05D006079 ORTHO05D008156 1.3e-220 769.6 426 89.2
Cfa017268 Carpinus fangiana HOM05D006079 ORTHO05D008156 2.6e-186 655.6 432 74.1
CANSAT35G1087 Cannabis sativa HOM05D006079 ORTHO05D008156 1.0e-185 653.7 432 74.8
Manes.08G086700 Manihot esculenta HOM05D006079 ORTHO05D008156 1.9e-184 649.4 432 73.4
Haze_20934 Corylus avellana HOM05D006079 ORTHO05D008156 2.7e-183 645.6 438 73.5
Prupe.6G269000 Prunus persica HOM05D006079 ORTHO05D008156 1.8e-182 642.9 432 74.3
PGR031G3170 Punica granatum HOM05D006079 ORTHO05D008156 1.2e-181 640.2 432 72.9
CSS0045639 Camellia sinensis var. sinensis HOM05D006079 ORTHO05D008156 1.5e-181 639.8 433 73.4
Dinv35521 Davidia involucrata HOM05D006079 ORTHO05D008156 2.0e-181 639.4 435 73.1
QL07p036333 Quercus lobata HOM05D006079 ORTHO05D008156 2.6e-181 639.0 436 73.2
Actinidia13795 Actinidia chinensis HOM05D006079 ORTHO05D008156 2.8e-180 635.6 435 74.0
FAN02G2404 Fragaria x ananassa HOM05D006079 ORTHO05D008156 8.3e-180 634.0 432 73.4
Glyma.07G143100 Glycine max HOM05D006079 ORTHO05D008156 1.8e-179 632.9 432 73.1
COL.COLO4_14632 Corchorus olitorius HOM05D006079 ORTHO05D008156 4.1e-179 631.7 432 72.7
Cpa.g.sc56.97 Carica papaya HOM05D006079 ORTHO05D008156 7.0e-179 630.9 427 73.8
MD12G1158600 Malus domestica HOM05D006079 ORTHO05D008156 9.1e-179 630.6 432 72.5
FAN14G2872 Fragaria x ananassa HOM05D006079 ORTHO05D008156 1.2e-178 630.2 432 73.1
FvH4_6g12250 Fragaria vesca HOM05D006079 ORTHO05D008156 1.6e-178 629.8 432 72.9
FAN05G0163 Fragaria x ananassa HOM05D006079 ORTHO05D008156 2.7e-178 629.0 432 73.1
Psat3g135200 Pisum sativum HOM05D006079 ORTHO05D008156 4.5e-178 628.2 435 72.4
CiPaw.10G153700 Carya illinoinensis HOM05D006079 ORTHO05D008156 5.9e-178 627.9 433 70.7
RcHm_v2.0_Chr3g0464051 Rosa chinensis HOM05D006079 ORTHO05D008156 5.9e-178 627.9 432 72.5
Duzib128G0993 Durio zibethinus HOM05D006079 ORTHO05D008156 3.8e-177 625.2 432 72.0
FAN09G0680 Fragaria x ananassa HOM05D006079 ORTHO05D008156 3.8e-177 625.2 432 72.7
MSTRG.5605 Avicennia marina HOM05D006079 ORTHO05D008156 1.1e-176 623.6 433 73.9
Gorai.012G110900 Gossypium raimondii HOM05D006079 ORTHO05D008156 1.1e-176 623.6 432 69.0
Eucgr.B02761 Eucalyptus grandis HOM05D006079 ORTHO05D008156 1.9e-176 622.9 432 71.5
GSVIVG01034026001 Vitis vinifera HOM05D006079 ORTHO05D008156 3.2e-176 622.1 432 72.5
Cc06_g01790 Coffea canephora HOM05D006079 ORTHO05D008156 4.2e-176 621.7 435 72.2
Thecc.05G024000 Theobroma cacao HOM05D006079 ORTHO05D008156 5.5e-176 621.3 432 72.2
Atru.chr8.2129 Acer truncatum HOM05D006079 ORTHO05D008156 7.2e-176 620.9 436 69.7
Ca_09158_v3 Cicer arietinum L. HOM05D006079 ORTHO05D008156 1.6e-175 619.8 433 72.3
Gohir.A04G087500 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.6e-175 619.8 432 69.7
Nn2g13580 Nelumbo nucifera HOM05D006079 ORTHO05D008156 1.8e-174 616.3 433 69.7
Duzib093G0682 Durio zibethinus HOM05D006079 ORTHO05D008156 3.0e-174 615.5 430 68.6
arahy.Tifrunner.gnm1.ann1.3KU04F Arachis hypogaea HOM05D006079 ORTHO05D008156 2.0e-173 612.8 434 72.8
TWI77G0608 Tripterygium wilfordii HOM05D006079 ORTHO05D008156 2.0e-173 612.8 432 70.4
Ciclev10011790m.g Citrus clementina HOM05D006079 ORTHO05D008156 4.4e-173 611.7 435 72.0
Lj2A83T75 Lonicera japonica HOM05D006079 ORTHO05D008156 8.3e-172 607.4 407 75.7
Lj1g0026135 Lotus japonicus HOM05D006079 ORTHO05D008156 8.3e-172 607.4 438 70.3
Gohir.D04G127900 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.8e-171 606.3 432 68.1
Lalb_Chr01g0022871 Lupinus albus HOM05D006079 ORTHO05D008156 1.8e-171 606.3 434 71.4
ClCG04G007320 Citrullus lanatus HOM05D006079 ORTHO05D008156 3.1e-171 605.5 432 70.8
Medtr7g066250 Medicago truncatula HOM05D006079 ORTHO05D008156 9.1e-171 604.0 434 70.5
Phvul.008G111400 Phaseolus vulgaris HOM05D006079 ORTHO05D008156 9.1e-171 604.0 433 70.9
SGA_v2.0_scaffold85G26780 Striga asiatica HOM05D006079 ORTHO05D008156 2.3e-169 599.4 434 68.2
Sc25g0003370 Simmondsia chinensis HOM05D006079 ORTHO05D008156 5.0e-169 598.2 432 69.2
CsaV3_4G025930 Cucumis sativus L. HOM05D006079 ORTHO05D008156 1.1e-168 597.0 432 69.9
arahy.Tifrunner.gnm1.ann1.GZPT0A Arachis hypogaea HOM05D006079 ORTHO05D008156 4.2e-168 595.1 458 68.3
ECA236G0495 Erigeron canadensis HOM05D006079 ORTHO05D008156 7.2e-168 594.3 447 65.3
MELO3C003219.2 Cucumis melo HOM05D006079 ORTHO05D008156 1.6e-167 593.2 432 69.4
Sed0002088 Sechium edule HOM05D006079 ORTHO05D008156 2.1e-167 592.8 408 71.8
Sabra06G0073200 Salix brachista HOM05D006079 ORTHO05D008156 2.3e-166 589.3 433 67.7
PSO585G0039 Papaver somniferum HOM05D006079 ORTHO05D008156 1.7e-164 583.2 414 67.9
Potri.006G095400 Populus trichocarpa HOM05D006079 ORTHO05D008156 2.2e-164 582.8 433 66.5
HanXRQChr04g0124711 Helianthus annuus HOM05D006079 ORTHO05D008156 6.3e-164 581.3 431 66.8
Oeu015011.1 Olea europaea HOM05D006079 ORTHO05D008156 6.3e-164 581.3 407 72.7
PSO384G3626 Papaver somniferum HOM05D006079 ORTHO05D008156 2.7e-162 575.9 414 67.4
Migut.J00236 Erythranthe guttata HOM05D006079 ORTHO05D008156 7.8e-162 574.3 434 65.2
THA.LOC104823390 Tarenaya hassleriana HOM05D006079 ORTHO05D008156 2.0e-157 559.7 432 63.9
TAR633G1690 Trochodendron aralioides HOM05D006079 ORTHO05D008156 3.4e-157 558.9 441 63.5
CAN.G338.65 Capsicum annuum HOM05D006079 ORTHO05D008156 1.6e-154 550.1 304 91.8
Aqoxy1G00752 Aquilegia oxysepala HOM05D006079 ORTHO05D008156 2.0e-154 549.7 432 64.4
Rhsim05G0203500 Rhododendron simsii HOM05D006079 ORTHO05D008156 2.7e-154 549.3 351 76.4
Ah.11g045330 Amaranthus hybridus HOM05D006079 ORTHO05D008156 7.8e-154 547.7 438 64.2
BcaB02g09226 Brassica carinata HOM05D006079 ORTHO05D008156 1.7e-153 546.6 433 60.5
BcaC02g11943 Brassica carinata HOM05D006079 ORTHO05D008156 1.7e-153 546.6 433 60.7
Aa31LG5G23170 Aethionema arabicum HOM05D006079 ORTHO05D008156 2.3e-153 546.2 433 62.4
CARHR132560 Cardamine hirsuta HOM05D006079 ORTHO05D008156 3.0e-153 545.8 432 60.0
Sp4g20320 Schrenkiella parvula HOM05D006079 ORTHO05D008156 3.0e-153 545.8 432 62.7
AL4G34980 Arabidopsis lyrata HOM05D006079 ORTHO05D008156 1.9e-152 543.1 432 60.9
Actinidia29142 Actinidia chinensis HOM05D006079 ORTHO05D008156 9.5e-152 540.8 425 67.5
AT2G38000 Arabidopsis thaliana HOM05D006079 ORTHO05D008156 9.5e-152 540.8 434 61.1
Thhalv10016725m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 2.1e-151 539.7 433 60.0
BolC4t22573H Brassica oleracea HOM05D006079 ORTHO05D008156 4.7e-151 538.5 415 62.2
A05p08000 Brassica napus HOM05D006079 ORTHO05D008156 1.8e-150 536.6 433 60.0
AUR62041356 Chenopodium quinoa HOM05D006079 ORTHO05D008156 5.2e-150 535.0 399 67.4
Carub.0004s1997 Capsella rubella HOM05D006079 ORTHO05D008156 3.4e-149 532.3 432 59.3
DCAR_024040 Daucus carota HOM05D006079 ORTHO05D008156 2.2e-148 529.6 465 60.0
Lsat_1_v5_gn_8_82341 Lactuca sativa HOM05D006079 ORTHO05D008156 2.9e-148 529.3 413 67.8
BraA05t19766Z Brassica rapa HOM05D006079 ORTHO05D008156 1.1e-147 527.3 421 60.3
BcaB02g09227 Brassica carinata HOM05D006079 ORTHO05D008156 1.9e-147 526.6 433 59.1
vmacro20226 Vaccinium macrocarpon HOM05D006079 ORTHO05D008156 1.9e-147 526.6 442 63.8
MBI05_g36624_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 3.5e-146 522.3 329 76.9
VMungo1383G1007 Vigna mungo HOM05D006079 ORTHO05D008156 4.6e-146 521.9 386 69.9
EL10Ac5g11535 Beta vulgaris HOM05D006079 ORTHO05D008156 4.3e-144 515.4 433 59.1
CDE04G0224 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 3.1e-142 509.2 420 63.1
ATR0618G129 Amborella trichopoda HOM05D006079 ORTHO05D008156 2.9e-140 502.7 422 61.4
unitig_26.g9105 Utricularia gibba HOM05D006079 ORTHO05D008156 3.2e-139 499.2 404 61.6
Hma1.2p1_0763F.1_g214490 Hydrangea macrophylla HOM05D006079 ORTHO05D008156 2.1e-138 496.5 420 63.6
C04p09660 Brassica napus HOM05D006079 ORTHO05D008156 1.1e-136 490.7 399 60.2
Os05g0316200 Oryza sativa ssp. japonica HOM05D006079 ORTHO05D008156 4.3e-136 488.8 404 63.4
HPP92_006654 Vanilla planifolia HOM05D006079 ORTHO05D008156 4.7e-135 485.3 433 56.8
Gohir.A13G086740 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.8e-134 483.4 430 59.1
Zm00001eb169630 Zea mays HOM05D006079 ORTHO05D008156 4.9e-132 475.3 403 60.3
SEGI_08405 Sequoiadendron giganteum HOM05D006079 ORTHO05D008156 8.1e-127 458.0 326 70.6
TPR.G29287 Trifolium pratense HOM05D006079 ORTHO05D008156 1.3e-116 424.1 264 79.9
CDE07G0746 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 1.7e-108 397.1 432 52.5
AagrBONN_evm.TU.Sc2ySwM_117.3694 Anthoceros agrestis HOM05D006079 ORTHO05D008156 1.3e-95 354.4 372 49.2
Mapoly0040s0094 Marchantia polymorpha HOM05D006079 ORTHO05D008156 1.6e-90 337.4 415 45.5
Migut.J00237 Erythranthe guttata HOM05D006079 ORTHO05D008156 1.8e-89 334.0 399 47.1
BcaC02g11941 Brassica carinata HOM05D006079 ORTHO05D008156 6.7e-89 332.0 218 70.2
SMO172G0100 Selaginella moellendorffii HOM05D006079 ORTHO05D008156 4.1e-86 322.8 320 55.3
Pp3c16_16710 Physcomitrium patens HOM05D006079 ORTHO05D008156 7.9e-82 308.5 419 43.4
HPP92_006629 Vanilla planifolia HOM05D006079 ORTHO05D008156 1.0e-73 281.6 310 48.1
Gohir.D13G085200 Gossypium hirsutum HOM05D006079 ORTHO05D008156 3.9e-73 279.6 213 64.3
CAN.G686.13 Capsicum annuum HOM05D006079 ORTHO05D008156 3.2e-67 260.0 135 91.9
Gohir.A01G178136 Gossypium hirsutum HOM05D006079 ORTHO05D008156 6.3e-55 219.2 170 61.8
Lsat_1_v5_gn_5_162881 Lactuca sativa HOM05D006079 ORTHO05D008156 3.1e-54 216.9 135 70.4
MD04G1144700 Malus domestica HOM05D006079 ORTHO05D008156 4.1e-54 216.5 159 65.4
Thhalv10017300m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 2.6e-48 197.2 223 47.5
Gorai.006G157700 Gossypium raimondii HOM05D006079 ORTHO05D008156 2.4e-38 164.1 126 62.7
Gohir.D09G137350 Gossypium hirsutum HOM05D006079 ORTHO05D008156 5.4e-38 162.9 126 62.7
QL07p036284 Quercus lobata HOM05D006079 ORTHO05D338014 7.8e-37 159.1 106 67.9
Cc02_g12960 Coffea canephora HOM05D006079 ORTHO05D008156 7.8e-29 132.5 134 53.0
TAR636G2503 Trochodendron aralioides HOM05D006079 ORTHO05D008156 1.0e-28 132.1 82 78.0
MD04G1144600 Malus domestica HOM05D006079 ORTHO05D032748 1.8e-25 121.3 91 73.6
TPR.G34865 Trifolium pratense HOM05D006079 ORTHO05D008156 1.0e-20 105.5 126 49.2
BraA05t21464Z Brassica rapa HOM05D006079 ORTHO05D032748 3.2e-14 84.0 67 55.2
MBI05_g36625_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 6.6e-12 76.3 90 48.9
BcaC04g24204 Brassica carinata HOM05D006079 ORTHO05D032748 2.8e-10 70.9 67 49.3


User provided reference genes

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