Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 2.5e-72 275.4 143 100.0
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 1.4e-59 233.0 127 95.3
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 2.3e-54 215.7 127 87.4
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.5e-32 142.5 118 73.7
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.7e-31 138.3 118 73.7
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.6e-18 96.7 139 46.0
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.6e-18 96.7 139 46.0
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 2.7e-18 95.9 120 50.8
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.9e-17 92.0 139 45.3
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 2.5e-16 89.4 143 42.0
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 4.3e-16 88.6 157 43.3
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 1.2e-15 87.0 147 45.6
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.6e-15 86.7 113 47.8
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 6.2e-15 84.7 147 42.9
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 8.1e-15 84.3 140 44.3
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 1.1e-14 84.0 132 41.7
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.1e-14 84.0 130 41.5
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 1.4e-14 83.6 145 40.7
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 2.3e-14 82.8 152 44.1
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 4.0e-14 82.0 149 38.9
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 1.2e-13 80.5 155 40.6
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 3.4e-13 79.0 149 37.6
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 3.4e-13 79.0 149 37.6
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 3.4e-13 79.0 145 40.7
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 4.4e-13 78.6 154 39.6
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 2.2e-12 76.3 165 37.0
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.9e-12 75.9 124 41.1
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.9e-12 75.9 132 40.9
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 3.7e-12 75.5 118 41.5
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 6.4e-12 74.7 144 36.1
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 6.4e-12 74.7 132 40.2
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 6.4e-12 74.7 144 36.1
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 1.4e-11 73.6 149 37.6
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 1.4e-11 73.6 96 46.9
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.4e-11 73.6 162 37.7
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 1.9e-11 73.2 134 36.6
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.9e-11 73.2 165 33.3
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 1.9e-11 73.2 175 33.7
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.4e-11 72.8 148 38.5
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 4.1e-11 72.0 165 35.2
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 4.1e-11 72.0 148 38.5
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 5.4e-11 71.6 142 33.8
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 1.6e-10 70.1 124 41.1
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 2.1e-10 69.7 164 36.0
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 2.1e-10 69.7 163 36.2
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 2.7e-10 69.3 143 34.3
HanXRQChr06g0177631 Helianthus annuus HOM05D007866 ORTHO05D003871 3.5e-10 68.9 148 33.8
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 3.5e-10 68.9 159 37.1
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 4.6e-10 68.6 76 47.4
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 6.0e-10 68.2 128 36.7
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 6.0e-10 68.2 74 48.6
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 7.8e-10 67.8 142 33.8
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 7.8e-10 67.8 152 39.5
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.0e-09 67.4 142 35.2
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 1.3e-09 67.0 57 52.6
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.3e-09 67.0 128 36.7
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 2.3e-09 66.2 142 33.1
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 2.3e-09 66.2 153 37.9
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 2.3e-09 66.2 158 37.3
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 5.1e-09 65.1 49 65.3
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 5.1e-09 65.1 161 36.0
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 6.6e-09 64.7 131 36.6
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 8.6e-09 64.3 75 45.3
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 8.6e-09 64.3 75 45.3
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 8.6e-09 64.3 156 32.1
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 8.6e-09 64.3 39 79.5
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 1.1e-08 63.9 102 45.1
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 1.9e-08 63.2 161 36.0
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 1.9e-08 63.2 154 35.7
HanXRQChr06g0177641 Helianthus annuus HOM05D007866 ORTHO05D003871 2.5e-08 62.8 149 32.2
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.3e-08 62.4 42 66.7
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.3e-08 62.4 42 66.7
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.3e-08 62.4 135 37.8
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 5.6e-08 61.6 52 55.8
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 5.6e-08 61.6 162 35.2
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 7.3e-08 61.2 36 75.0
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 7.3e-08 61.2 124 33.9
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 7.3e-08 61.2 116 41.4
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 7.3e-08 61.2 162 35.8
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 9.5e-08 60.8 61 49.2
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.2e-07 60.5 64 53.1
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 1.2e-07 60.5 46 52.2
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 1.6e-07 60.1 126 33.3
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.6e-07 60.1 81 37.0
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 2.1e-07 59.7 121 39.7
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 2.1e-07 59.7 125 33.6
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.1e-07 59.7 103 36.9
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 2.8e-07 59.3 77 39.0
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 3.6e-07 58.9 70 44.3
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 3.6e-07 58.9 42 64.3
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 3.6e-07 58.9 42 64.3
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 3.6e-07 58.9 85 35.3
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 3.6e-07 58.9 131 34.4
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 4.7e-07 58.5 62 46.8
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 8.1e-07 57.8 126 34.1
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 8.1e-07 57.8 60 53.3
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 8.1e-07 57.8 126 31.0
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 8.1e-07 57.8 102 33.3
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.1e-06 57.4 122 33.6
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 1.1e-06 57.4 129 37.2
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.4e-06 57.0 99 35.4
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 1.4e-06 57.0 65 44.6
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.4e-06 57.0 130 33.8
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.4e-06 57.0 74 45.9
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.8e-06 56.6 135 34.1
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.8e-06 56.6 133 32.3
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 2.4e-06 56.2 39 61.5
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.4e-06 56.2 100 43.0
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 3.1e-06 55.8 80 40.0
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 3.1e-06 55.8 80 40.0
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.1e-06 55.8 132 31.8
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 3.1e-06 55.8 121 33.9
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 3.1e-06 55.8 47 51.1
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 4.0e-06 55.5 50 56.0
Dinv35543 Davidia involucrata HOM05D007866 ORTHO05D003871 4.0e-06 55.5 127 37.8
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.0e-06 55.5 132 31.8
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.0e-06 55.5 132 31.8
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 4.0e-06 55.5 42 57.1
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 4.0e-06 55.5 128 31.2
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 5.2e-06 55.1 46 52.2
DCAR_028812 Daucus carota HOM05D007866 ORTHO05D003871 5.2e-06 55.1 154 31.2
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 5.2e-06 55.1 81 37.0
Nn2g11287 Nelumbo nucifera HOM05D007156 ORTHO05D003871 5.2e-06 55.1 72 38.9
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.2e-06 55.1 61 45.9
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 5.2e-06 55.1 53 52.8
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 5.2e-06 55.1 134 29.9
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 5.2e-06 55.1 64 45.3
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 5.2e-06 55.1 139 33.1
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 6.8e-06 54.7 123 32.5
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 6.8e-06 54.7 36 63.9
SalBow5G2473 Salvia bowleyana HOM05D022546 ORTHO05D350248 6.8e-06 54.7 128 29.7
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.9e-06 54.3 132 30.3
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.9e-06 54.3 132 29.5
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 8.9e-06 54.3 80 38.8
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 8.9e-06 54.3 49 49.0
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 8.9e-06 54.3 60 50.0
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 8.9e-06 54.3 42 59.5


User provided reference genes

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