Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 8.8e-57 223.4 113 100.0
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 4.4e-56 221.1 113 99.1
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.8e-54 215.7 113 97.3
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 3.5e-45 184.9 113 85.0
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.9e-43 179.1 111 82.0
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.5e-43 178.7 111 82.0
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 5.7e-40 167.5 111 77.5
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 2.0e-32 142.5 113 68.1
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 1.7e-31 139.4 117 64.1
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 3.7e-31 138.3 115 68.7
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 4.9e-31 137.9 118 63.6
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.8e-30 136.0 113 65.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 9.2e-30 133.7 120 65.0
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 1.2e-29 133.3 115 64.3
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 1.6e-29 132.9 113 63.7
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 2.0e-29 132.5 115 62.6
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.0e-29 132.5 114 64.0
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 4.5e-29 131.3 109 62.4
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 5.9e-29 131.0 115 61.7
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 7.8e-29 130.6 113 62.8
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.0e-28 130.2 114 62.3
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 1.0e-28 130.2 112 61.6
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.3e-28 129.8 110 60.9
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.3e-28 129.8 109 62.4
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 1.3e-28 129.8 112 64.3
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.3e-28 129.8 109 64.2
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.7e-28 129.4 113 62.8
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.7e-28 129.4 113 62.8
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.7e-28 129.4 113 62.8
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 1.7e-28 129.4 112 61.6
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.9e-28 128.6 113 61.9
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.9e-28 128.6 113 61.9
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.9e-28 128.6 113 61.9
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.9e-28 128.6 113 62.8
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 3.8e-28 128.3 115 63.5
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 5.0e-28 127.9 79 77.2
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 6.6e-28 127.5 119 61.3
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 8.6e-28 127.1 115 63.5
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 8.6e-28 127.1 110 59.1
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 8.6e-28 127.1 110 61.8
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 8.6e-28 127.1 110 61.8
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 8.6e-28 127.1 114 62.3
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.5e-27 126.3 93 68.8
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.9e-27 125.9 113 63.7
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.9e-27 125.9 113 60.2
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.9e-27 125.9 79 75.9
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.9e-27 125.9 111 60.4
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 3.3e-27 125.2 111 61.3
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.3e-27 125.2 118 60.2
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 4.3e-27 124.8 114 58.8
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 5.6e-27 124.4 113 63.7
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 5.6e-27 124.4 114 60.5
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 7.3e-27 124.0 96 67.7
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 7.3e-27 124.0 114 61.4
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 7.3e-27 124.0 111 58.6
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.5e-27 123.6 111 56.8
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 1.2e-26 123.2 113 60.2
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.2e-26 123.2 120 54.2
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.6e-26 122.9 73 80.8
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 2.1e-26 122.5 110 58.2
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 2.1e-26 122.5 115 58.3
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.1e-26 122.5 94 64.9
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.1e-26 122.5 110 58.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 2.8e-26 122.1 112 59.8
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 3.6e-26 121.7 79 74.7
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 8.0e-26 120.6 120 58.3
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 8.0e-26 120.6 113 61.1
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 8.0e-26 120.6 78 73.1
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.4e-25 119.8 79 73.4
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 1.4e-25 119.8 119 56.3
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 1.4e-25 119.8 79 69.6
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.4e-25 119.8 111 59.5
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.8e-25 119.4 109 55.0
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.8e-25 119.4 111 61.3
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.3e-25 119.0 109 57.8
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.3e-25 119.0 109 57.8
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.0e-25 118.6 111 62.2
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 5.2e-25 117.9 116 57.8
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 6.8e-25 117.5 109 57.8
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 6.8e-25 117.5 118 55.9
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 6.8e-25 117.5 111 54.1
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 8.9e-25 117.1 115 58.3
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 8.9e-25 117.1 79 73.4
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 8.9e-25 117.1 80 71.2
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.9e-25 117.1 109 58.7
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 8.9e-25 117.1 90 62.2
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.2e-24 116.7 79 73.4
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.5e-24 116.3 114 57.0
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.6e-24 115.5 135 49.6
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 3.4e-24 115.2 111 58.6
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 4.4e-24 114.8 79 72.2
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 4.4e-24 114.8 79 72.2
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 7.5e-24 114.0 111 58.6
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 7.5e-24 114.0 111 58.6
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 9.8e-24 113.6 112 56.2
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 9.8e-24 113.6 112 56.2
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 9.8e-24 113.6 112 56.2
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 9.8e-24 113.6 79 72.2
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.3e-23 113.2 79 69.6
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.3e-23 113.2 79 69.6
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.3e-23 113.2 79 69.6
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.3e-23 113.2 109 56.0
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.7e-23 112.8 111 60.4
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.7e-23 112.8 110 58.2
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.7e-23 112.8 107 58.9
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 2.2e-23 112.5 120 55.8
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.2e-23 112.5 118 54.2
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 2.2e-23 112.5 99 58.6
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 2.9e-23 112.1 111 57.7
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 4.9e-23 111.3 112 54.5
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.1e-22 110.2 79 65.8
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.1e-22 110.2 112 55.4
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.1e-22 110.2 64 81.2
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.8e-22 109.4 144 46.5
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 3.2e-22 108.6 73 69.9
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.2e-22 108.6 102 57.8
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.7e-20 102.8 88 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 2.3e-20 102.4 75 64.0
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 3.0e-20 102.1 110 52.7
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 7.3e-19 97.4 64 73.4
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.2e-18 96.7 71 64.8
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.2e-18 96.7 87 60.9
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.6e-18 96.3 81 56.8
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 8.0e-18 94.0 93 57.0
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 1.1e-17 93.6 59 72.9
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.4e-17 93.2 94 53.2
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 1.8e-17 92.8 54 81.5
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 3.1e-17 92.0 82 57.3
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 3.1e-17 92.0 116 50.0
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 5.8e-16 87.8 94 56.4
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.9e-15 85.5 88 54.5
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.9e-15 84.7 110 50.0
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-13 80.1 49 77.6
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 3.5e-13 78.6 104 45.2
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.3e-12 76.6 136 38.2
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 4.7e-10 68.2 42 73.8
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 7.5e-08 60.8 75 44.0
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 1.1e-06 57.0 72 41.7
PRCOL_00006531 Prasinoderma coloniale HOM05D005845 ORTHO05D007067 3.2e-06 55.5 57 43.9


User provided reference genes

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