Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.2e-97 360.1 219 100.0
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.9e-92 342.8 217 95.9
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.2e-91 340.1 238 89.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 8.1e-75 284.3 217 69.1
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.6e-70 270.0 222 71.2
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.9e-69 265.4 203 83.3
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 8.7e-69 264.2 220 69.5
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 8.1e-67 257.7 218 74.3
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.1e-66 257.3 223 70.0
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.0e-66 254.2 213 72.8
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.5e-65 253.4 163 89.0
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 3.2e-63 245.7 215 62.8
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 4.2e-63 245.4 223 67.7
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.2e-62 243.8 230 60.4
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.0e-61 240.7 291 57.4
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.3e-61 240.4 217 70.0
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.8e-61 240.0 219 62.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.8e-61 240.0 219 62.1
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.8e-61 240.0 217 69.1
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 3.9e-61 238.8 218 67.0
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.1e-61 238.4 220 64.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.1e-61 238.4 220 64.5
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.1e-60 237.3 232 60.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.5e-60 236.9 222 59.0
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.5e-60 236.1 215 59.5
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.5e-60 236.1 217 67.3
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.5e-60 236.1 220 64.1
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 4.3e-60 235.3 219 67.6
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 5.7e-60 235.0 222 69.4
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.8e-59 232.6 217 60.8
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 3.7e-59 232.3 219 68.5
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 4.8e-59 231.9 223 61.4
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 6.3e-59 231.5 217 65.9
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 4.1e-58 228.8 224 66.1
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 4.1e-58 228.8 220 60.5
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 6.9e-58 228.0 227 60.4
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 6.9e-58 228.0 222 59.9
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.0e-57 226.5 217 61.8
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 3.4e-57 225.7 220 58.2
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 4.5e-57 225.3 214 57.9
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 5.9e-57 224.9 219 62.6
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.3e-56 223.8 224 62.9
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.3e-56 223.8 213 58.2
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.7e-56 223.4 219 60.3
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 2.9e-56 222.6 218 62.4
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.9e-56 222.6 223 60.1
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.9e-56 222.6 220 66.8
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 3.8e-56 222.2 218 55.5
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.8e-56 222.2 219 58.0
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 6.5e-56 221.5 224 62.1
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 6.5e-56 221.5 217 60.4
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 8.5e-56 221.1 217 65.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 8.5e-56 221.1 206 64.1
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.1e-55 220.7 211 68.7
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.1e-55 220.7 195 73.3
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.5e-55 219.5 222 57.2
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.2e-55 219.2 220 60.0
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.2e-55 219.2 220 60.0
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 4.2e-55 218.8 225 60.0
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 7.2e-55 218.0 224 55.4
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 9.3e-55 217.6 220 60.0
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.3e-55 217.6 220 57.3
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.2e-54 217.2 225 60.0
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 2.1e-54 216.5 225 64.4
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.7e-54 216.1 220 56.8
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 4.6e-54 215.3 218 54.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 4.6e-54 215.3 218 57.8
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 6.1e-54 214.9 214 62.1
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 7.9e-54 214.5 219 57.1
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.3e-53 213.8 221 60.6
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.8e-53 213.4 218 56.9
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.9e-53 212.2 220 53.6
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 5.1e-53 211.8 218 54.1
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.7e-53 211.5 224 60.3
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 6.7e-53 211.5 218 65.1
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.7e-53 211.5 223 62.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.1e-52 210.7 222 52.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.5e-52 210.3 228 53.5
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-52 210.3 219 58.0
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.5e-52 210.3 219 53.0
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.9e-52 209.9 219 53.0
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.9e-52 209.9 219 52.5
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.5e-52 209.5 214 62.1
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.3e-52 209.1 210 59.5
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 4.3e-52 208.8 220 53.6
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 5.7e-52 208.4 220 54.1
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.6e-51 206.8 205 56.1
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.8e-51 206.1 207 60.4
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.8e-51 206.1 219 57.5
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 2.8e-51 206.1 217 57.6
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.8e-51 206.1 218 57.3
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 3.7e-51 205.7 212 60.4
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 6.3e-51 204.9 228 53.9
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 8.2e-51 204.5 208 52.4
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.4e-50 203.8 220 55.0
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.4e-50 203.8 222 57.2
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.4e-50 203.0 211 57.8
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 4.1e-50 202.2 218 55.5
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.3e-50 201.8 213 50.7
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 6.9e-50 201.4 218 55.5
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 7.7e-49 198.0 225 50.2
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.2e-48 196.4 204 60.3
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 8.5e-48 194.5 221 49.3
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.2e-47 192.6 215 60.0
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 9.4e-47 191.0 164 59.8
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 6.1e-46 188.3 217 52.5
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 6.7e-45 184.9 215 53.5
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 3.3e-44 182.6 156 62.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.8e-43 179.5 157 62.4
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.0e-40 171.0 215 45.6
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 5.0e-40 168.7 217 52.5
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.1e-39 167.5 217 48.8
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.9e-39 166.8 199 58.3
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.5e-39 166.4 215 48.8
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.2e-38 164.1 224 57.1
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 6.7e-37 158.3 197 46.2
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.7e-36 155.2 195 45.1
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.8e-35 152.9 138 57.2
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 4.8e-35 152.1 145 64.1
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 4.8e-35 152.1 149 53.0
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.1e-34 151.0 221 45.7
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 3.1e-34 149.4 226 41.6
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 3.1e-34 149.4 208 47.1
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.0e-33 146.7 156 47.4
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 5.9e-33 145.2 217 40.1
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.9e-32 142.9 166 48.2
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.1e-31 141.0 207 41.5
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.5e-31 139.8 131 61.8
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 5.5e-31 138.7 217 37.8
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.2e-30 137.5 222 37.8
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 8.0e-30 134.8 192 40.6
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.4e-29 134.0 170 40.0
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 3.0e-29 132.9 210 40.0
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.3e-27 127.5 80 68.8
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.8e-26 123.6 107 61.7
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 7.0e-26 121.7 90 53.3
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.7e-25 119.8 148 46.6
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.8e-24 115.9 133 52.6
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 3.2e-23 112.8 126 50.8
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.2e-23 112.8 133 51.9
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.5e-23 112.1 201 39.8
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.6e-22 110.5 89 47.2
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.1e-22 110.2 218 32.1
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.6e-22 109.4 176 39.2
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 4.7e-22 109.0 90 48.9
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.3e-21 106.7 83 54.2
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 9.8e-20 101.3 154 34.4
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.4e-18 96.7 131 36.6
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.9e-17 92.0 84 46.4
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 7.2e-15 85.1 106 39.6
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.3e-13 80.1 112 48.2
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 1.5e-12 77.4 115 45.2
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 7.5e-12 75.1 114 42.1
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.7e-11 73.9 102 45.1
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 4.5e-09 65.9 54 59.3


User provided reference genes

Program Settings